메뉴 건너뛰기




Volumn 47, Issue 1, 2014, Pages 45-55

Optochemical control of deoxyoligonucleotide function via a nucleobase-caging approach

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBOZYME; OLIGONUCLEOTIDE; PROTEIN; RNA;

EID: 84892735179     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar400036a     Document Type: Article
Times cited : (120)

References (111)
  • 1
    • 33746734322 scopus 로고    scopus 로고
    • Biologically active molecules with a "light switch"
    • Mayer, G.; Heckel, A. Biologically active molecules with a "light switch" Angew. Chem., Int. Ed. 2006, 45, 4900-4921
    • (2006) Angew. Chem., Int. Ed. , vol.45 , pp. 4900-4921
    • Mayer, G.1    Heckel, A.2
  • 2
    • 73249117025 scopus 로고    scopus 로고
    • PhotoMorphs™: A novel light-activated reagent for controlling gene expression in zebrafish
    • Tomasini, A. J.; Schuler, A. D.; Zebala, J. A.; Mayer, A. N. PhotoMorphs™: A novel light-activated reagent for controlling gene expression in zebrafish Genesis 2009, 47, 736-743
    • (2009) Genesis , vol.47 , pp. 736-743
    • Tomasini, A.J.1    Schuler, A.D.2    Zebala, J.A.3    Mayer, A.N.4
  • 3
    • 0017867017 scopus 로고
    • Rapid photolytic release of adenosine 5′-triphosphate from a protected analogue: Utilization by the Na:K pump of human red blood cell ghosts
    • Kaplan, J. H.; Forbush, B.; Hoffman, J. F. Rapid photolytic release of adenosine 5′-triphosphate from a protected analogue: utilization by the Na:K pump of human red blood cell ghosts Biochemistry 1978, 17, 1929-1935
    • (1978) Biochemistry , vol.17 , pp. 1929-1935
    • Kaplan, J.H.1    Forbush, B.2    Hoffman, J.F.3
  • 5
    • 33947504848 scopus 로고    scopus 로고
    • Photochemical control of biological processes
    • Young, D.; Deiters, A. Photochemical control of biological processes Org. Biomol. Chem. 2007, 999-1005
    • (2007) Org. Biomol. Chem. , pp. 999-1005
    • Young, D.1    Deiters, A.2
  • 6
    • 84865285923 scopus 로고    scopus 로고
    • Light-controlled synthetic gene circuits
    • Gardner, L.; Deiters, A. Light-controlled synthetic gene circuits Curr. Opin. Chem. Biol. 2012, 16, 292-299
    • (2012) Curr. Opin. Chem. Biol. , vol.16 , pp. 292-299
    • Gardner, L.1    Deiters, A.2
  • 7
    • 77955844090 scopus 로고    scopus 로고
    • Recent advances in the photochemical control of protein function
    • Riggsbee, C.; Deiters, A. Recent advances in the photochemical control of protein function Trends Biotechnol. 2010, 468-475
    • (2010) Trends Biotechnol. , pp. 468-475
    • Riggsbee, C.1    Deiters, A.2
  • 8
    • 75649114249 scopus 로고    scopus 로고
    • Principles and applications of the photochemical control of cellular processes
    • Deiters, A. Principles and applications of the photochemical control of cellular processes ChemBioChem 2010, 47-53
    • (2010) ChemBioChem , pp. 47-53
    • Deiters, A.1
  • 9
    • 27744567862 scopus 로고    scopus 로고
    • The preparation and in vivo applications of caged peptides and proteins
    • Lawrence, D. S. The preparation and in vivo applications of caged peptides and proteins Curr. Opin. Chem. Biol. 2005, 9, 570-575
    • (2005) Curr. Opin. Chem. Biol. , vol.9 , pp. 570-575
    • Lawrence, D.S.1
  • 11
    • 67649243556 scopus 로고    scopus 로고
    • Illuminating the chemistry of life: Design, synthesis, and applications of ″caged″ and related photoresponsive compounds
    • Lee, H. M.; Larson, D. R.; Lawrence, D. S. Illuminating the chemistry of life: Design, synthesis, and applications of ″caged″ and related photoresponsive compounds ACS Chem. Biol. 2009, 4, 409-427
    • (2009) ACS Chem. Biol. , vol.4 , pp. 409-427
    • Lee, H.M.1    Larson, D.R.2    Lawrence, D.S.3
  • 12
    • 57849084800 scopus 로고    scopus 로고
    • Nucleic acids as therapeutic agents
    • Alvarez-Salas, L. M. Nucleic acids as therapeutic agents Curr. Top. Med. Chem. 2008, 8, 1379-1404
    • (2008) Curr. Top. Med. Chem. , vol.8 , pp. 1379-1404
    • Alvarez-Salas, L.M.1
  • 13
    • 0032725711 scopus 로고    scopus 로고
    • Antisense oligonucleotides as a tool for gene functionalization and target validation
    • Bennett, C. F.; Cowsert, L. M. Antisense oligonucleotides as a tool for gene functionalization and target validation Biochim. Biophys. Acta 1999, 1489, 19-30
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 19-30
    • Bennett, C.F.1    Cowsert, L.M.2
  • 14
    • 41549135181 scopus 로고    scopus 로고
    • RNA interference: An emerging generation of biologicals
    • Shrivastava, N.; Srivastava, A. RNA interference: An emerging generation of biologicals Biotechnol. J. 2008, 3, 339-353
    • (2008) Biotechnol. J. , vol.3 , pp. 339-353
    • Shrivastava, N.1    Srivastava, A.2
  • 15
    • 47649089968 scopus 로고    scopus 로고
    • Targeting DNA with triplex-forming oligonucleotides to modify gene sequence
    • Simon, P.; Cannata, F.; Concordet, J. P.; Giovannangeli, C. Targeting DNA with triplex-forming oligonucleotides to modify gene sequence Biochimie 2008, 90, 1109-1116
    • (2008) Biochimie , vol.90 , pp. 1109-1116
    • Simon, P.1    Cannata, F.2    Concordet, J.P.3    Giovannangeli, C.4
  • 16
    • 0141953974 scopus 로고    scopus 로고
    • Transcription factors as molecular targets: Molecular mechanisms of decoy ODN and their design
    • Tomita, N.; Ogihara, T.; Morishita, R. Transcription factors as molecular targets: Molecular mechanisms of decoy ODN and their design Curr. Drug Targets 2003, 4, 603-608
    • (2003) Curr. Drug Targets , vol.4 , pp. 603-608
    • Tomita, N.1    Ogihara, T.2    Morishita, R.3
  • 18
    • 34548671921 scopus 로고    scopus 로고
    • Light-controlled gene silencing in zebrafish embryos
    • Shestopalov, I. A.; Sinha, S.; Chen, J. K. Light-controlled gene silencing in zebrafish embryos Nat. Chem. Biol. 2007, 3, 650-651
    • (2007) Nat. Chem. Biol. , vol.3 , pp. 650-651
    • Shestopalov, I.A.1    Sinha, S.2    Chen, J.K.3
  • 19
    • 78149274251 scopus 로고    scopus 로고
    • Photocaged morpholino oligomers for the light-regulation of gene function in zebrafish and Xenopus embryos
    • Deiters, A.; Garner, R.; Lusic, H.; Govan, J.; Dush, M.; Nascone-Yoder, N.; Yoder, J. Photocaged morpholino oligomers for the light-regulation of gene function in zebrafish and Xenopus embryos J. Am. Chem. Soc. 2010, 132, 15644-15650
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 15644-15650
    • Deiters, A.1    Garner, R.2    Lusic, H.3    Govan, J.4    Dush, M.5    Nascone-Yoder, N.6    Yoder, J.7
  • 20
    • 39149108480 scopus 로고    scopus 로고
    • Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides
    • Tang, X.; Swaminathan, J.; Gewirtz, A. M.; Dmochowski, I. J. Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides Nucleic Acids Res. 2008, 36, 559-569
    • (2008) Nucleic Acids Res. , vol.36 , pp. 559-569
    • Tang, X.1    Swaminathan, J.2    Gewirtz, A.M.3    Dmochowski, I.J.4
  • 22
    • 0032125579 scopus 로고    scopus 로고
    • Caged RNA: Photo-control of a ribozyme reaction
    • Chaulk, S. G.; MacMillan, A. M. Caged RNA: Photo-control of a ribozyme reaction Nucleic Acids Res. 1998, 26, 3173-3178
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3173-3178
    • Chaulk, S.G.1    Macmillan, A.M.2
  • 23
    • 36248965157 scopus 로고    scopus 로고
    • Light-dependent RNA interference with nucleobase-caged siRNAs
    • Mikat, V.; Heckel, A. Light-dependent RNA interference with nucleobase-caged siRNAs RNA 2007, 13, 2341-2347
    • (2007) RNA , vol.13 , pp. 2341-2347
    • Mikat, V.1    Heckel, A.2
  • 24
    • 79851495876 scopus 로고    scopus 로고
    • Patterning of gene expression using new photolabile groups applied to light activated RNAi
    • Jain, P. K.; Shah, S.; Friedman, S. H. Patterning of gene expression using new photolabile groups applied to light activated RNAi J. Am. Chem. Soc. 2011, 133, 440-446
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 440-446
    • Jain, P.K.1    Shah, S.2    Friedman, S.H.3
  • 25
    • 84885022611 scopus 로고    scopus 로고
    • Caged oligonucleotides for bidirectional photomodulation of let-7 miRNA in zebrafish embryos
    • 10.1016/j.bmc.2013.04.082
    • Griepenburg, J. C.; Ruble, B. K.; Dmochowski, I. J. Caged oligonucleotides for bidirectional photomodulation of let-7 miRNA in zebrafish embryos Bioorg. Med. Chem. 2013, 10.1016/j.bmc.2013.04.082
    • (2013) Bioorg. Med. Chem.
    • Griepenburg, J.C.1    Ruble, B.K.2    Dmochowski, I.J.3
  • 26
    • 84857812439 scopus 로고    scopus 로고
    • Temporal and spatial regulation of microRNA activity with photoactivatable cantimirs
    • Zheng, G.; Cochella, L.; Liu, J.; Hobert, O.; Li, W. H. Temporal and spatial regulation of microRNA activity with photoactivatable cantimirs ACS Chem. Biol. 2011, 6, 1332-1338
    • (2011) ACS Chem. Biol. , vol.6 , pp. 1332-1338
    • Zheng, G.1    Cochella, L.2    Liu, J.3    Hobert, O.4    Li, W.H.5
  • 27
    • 84867375364 scopus 로고    scopus 로고
    • Spatiotemporal control of microRNA function using light-activated antagomirs
    • Connelly, C. M.; Uprety, R.; Hemphill, J.; Deiters, A. Spatiotemporal control of microRNA function using light-activated antagomirs Mol. Biosyst. 2012, 8, 2987-2993
    • (2012) Mol. Biosyst. , vol.8 , pp. 2987-2993
    • Connelly, C.M.1    Uprety, R.2    Hemphill, J.3    Deiters, A.4
  • 28
    • 84864147866 scopus 로고    scopus 로고
    • Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells
    • Govan, J. M.; Uprety, R.; Hemphill, J.; Lively, M. O.; Deiters, A. Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells ACS Chem. Biol. 2012, 7, 1247-1256
    • (2012) ACS Chem. Biol. , vol.7 , pp. 1247-1256
    • Govan, J.M.1    Uprety, R.2    Hemphill, J.3    Lively, M.O.4    Deiters, A.5
  • 29
    • 80051750858 scopus 로고    scopus 로고
    • Photochemical control of DNA decoy function enables precise regulation of nuclear factor κb activity
    • Govan, J. M.; Lively, M. O.; Deiters, A. Photochemical control of DNA decoy function enables precise regulation of nuclear factor κB activity J. Am. Chem. Soc. 2011, 133, 13176-13182
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 13176-13182
    • Govan, J.M.1    Lively, M.O.2    Deiters, A.3
  • 31
    • 0029116051 scopus 로고
    • Design and synthesis of a versatile photocleavable DNA building-block - Application to phototriggered hybridization
    • Ordoukhanian, P.; Taylor, J. S. Design and synthesis of a versatile photocleavable DNA building-block-application to phototriggered hybridization J. Am. Chem. Soc. 1995, 117, 9570-9571
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 9570-9571
    • Ordoukhanian, P.1    Taylor, J.S.2
  • 33
    • 84859372950 scopus 로고    scopus 로고
    • Turning gene function on and off using sense and antisense photo-morpholinos in zebrafish
    • Tallafuss, A.; Gibson, D.; Morcos, P.; Li, Y.; Seredick, S.; Eisen, J.; Washbourne, P. Turning gene function ON and OFF using sense and antisense photo-morpholinos in zebrafish Development 2012, 139, 1691-1699
    • (2012) Development , vol.139 , pp. 1691-1699
    • Tallafuss, A.1    Gibson, D.2    Morcos, P.3    Li, Y.4    Seredick, S.5    Eisen, J.6    Washbourne, P.7
  • 35
    • 34548756202 scopus 로고    scopus 로고
    • Regulating gene expression in zebrafish embryos using light-activated, negatively charged peptide nucleic acids
    • Tang, X.; Maegawa, S.; Weinberg, E. S.; Dmochowski, I. J. Regulating gene expression in zebrafish embryos using light-activated, negatively charged peptide nucleic acids J. Am. Chem. Soc. 2007, 129, 11000-11001
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 11000-11001
    • Tang, X.1    Maegawa, S.2    Weinberg, E.S.3    Dmochowski, I.J.4
  • 36
    • 84863686436 scopus 로고    scopus 로고
    • Cyclic caged morpholinos: Conformationally gated probes of embryonic gene function
    • Yamazoe, S.; Shestopalov, I. A.; Provost, E.; Leach, S. D.; Chen, J. K. Cyclic caged morpholinos: Conformationally gated probes of embryonic gene function Angew. Chem., Int. Ed. 2012, 51, 6908-6911
    • (2012) Angew. Chem., Int. Ed. , vol.51 , pp. 6908-6911
    • Yamazoe, S.1    Shestopalov, I.A.2    Provost, E.3    Leach, S.D.4    Chen, J.K.5
  • 37
    • 77954350442 scopus 로고    scopus 로고
    • Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides
    • Tang, X. J.; Su, M.; Yu, L. L.; Lv, C.; Wang, J.; Li, Z. J. Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides Nucleic Acids Res. 2010, 38, 3848-3855
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3848-3855
    • Tang, X.J.1    Su, M.2    Yu, L.L.3    Lv, C.4    Wang, J.5    Li, Z.J.6
  • 38
    • 84870588484 scopus 로고    scopus 로고
    • Manipulation of gene expression in zebrafish using caged circular morpholino oligomers
    • Wang, Y.; Wu, L.; Wang, P.; Lv, C.; Yang, Z.; Tang, X. Manipulation of gene expression in zebrafish using caged circular morpholino oligomers Nucleic Acids Res. 2012, 40, 11155-11162
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11155-11162
    • Wang, Y.1    Wu, L.2    Wang, P.3    Lv, C.4    Yang, Z.5    Tang, X.6
  • 39
    • 84871727314 scopus 로고    scopus 로고
    • Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells
    • Wu, L.; Wang, Y.; Wu, J. Z.; Lv, C.; Wang, J.; Tang, X. J. Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells Nucleic Acids Res. 2013, 41, 677-686
    • (2013) Nucleic Acids Res. , vol.41 , pp. 677-686
    • Wu, L.1    Wang, Y.2    Wu, J.Z.3    Lv, C.4    Wang, J.5    Tang, X.J.6
  • 41
    • 0034928842 scopus 로고    scopus 로고
    • Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos
    • Ando, H.; Furuta, T.; Tsien, R. Y.; Okamoto, H. Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos Nat. Genet. 2001, 28, 317-325
    • (2001) Nat. Genet. , vol.28 , pp. 317-325
    • Ando, H.1    Furuta, T.2    Tsien, R.Y.3    Okamoto, H.4
  • 42
    • 0011705237 scopus 로고    scopus 로고
    • Separation of spliceosome assembly from catalysis with caged pre-mRNA substrates
    • Chaulk, S. G.; MacMillan, A. M. Separation of spliceosome assembly from catalysis with caged pre-mRNA substrates Angew. Chem., Int. Ed. 2001, 40, 2149-2152
    • (2001) Angew. Chem., Int. Ed. , vol.40 , pp. 2149-2152
    • Chaulk, S.G.1    Macmillan, A.M.2
  • 43
    • 5644237711 scopus 로고    scopus 로고
    • Triggering DNAzymes with light: A photoactive C8 thioether-linked adenosine
    • Ting, R.; Lermer, L.; Perrin, D. M. Triggering DNAzymes with light: A photoactive C8 thioether-linked adenosine J. Am. Chem. Soc. 2004, 126, 12720-12721
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 12720-12721
    • Ting, R.1    Lermer, L.2    Perrin, D.M.3
  • 44
    • 27844578341 scopus 로고    scopus 로고
    • Modulation of RNA tertiary folding by incorporation of caged nucleotides
    • Hobartner, C.; Silverman, S. K. Modulation of RNA tertiary folding by incorporation of caged nucleotides Angew. Chem., Int. Ed. 2005, 44, 7305-7309
    • (2005) Angew. Chem., Int. Ed. , vol.44 , pp. 7305-7309
    • Hobartner, C.1    Silverman, S.K.2
  • 45
    • 12344301401 scopus 로고    scopus 로고
    • Photoinduced transcription by using temporarily mismatched caged oligonucleotides
    • Kröck, L.; Heckel, A. Photoinduced transcription by using temporarily mismatched caged oligonucleotides Angew. Chem., Int. Ed. 2005, 44, 471-473
    • (2005) Angew. Chem., Int. Ed. , vol.44 , pp. 471-473
    • Kröck, L.1    Heckel, A.2
  • 47
    • 27744563783 scopus 로고    scopus 로고
    • Light-induced formation of G-quadruplex DNA secondary structures
    • Mayer, G.; Krock, L.; Mikat, V.; Engeser, M.; Heckel, A. Light-induced formation of G-quadruplex DNA secondary structures ChemBioChem 2005, 6, 1966-1970
    • (2005) ChemBioChem , vol.6 , pp. 1966-1970
    • Mayer, G.1    Krock, L.2    Mikat, V.3    Engeser, M.4    Heckel, A.5
  • 49
    • 43949106873 scopus 로고    scopus 로고
    • Light-activated deoxyguanosine: Photochemical regulation of peroxidase activity
    • Lusic, H.; Lively, M.; Deiters, A. Light-activated deoxyguanosine: Photochemical regulation of peroxidase activity Mol. Biosyst. 2008, 508-511
    • (2008) Mol. Biosyst. , pp. 508-511
    • Lusic, H.1    Lively, M.2    Deiters, A.3
  • 51
    • 0029874147 scopus 로고    scopus 로고
    • Cell survival and shuttle vector mutagenesis induced by ultraviolet A and ultraviolet B radiation in a human cell line
    • Robert, C.; Muel, B.; Benoit, A.; Dubertret, L.; Sarasin, A.; Stary, A. Cell survival and shuttle vector mutagenesis induced by ultraviolet A and ultraviolet B radiation in a human cell line J. Invest. Dermatol. 1996, 106, 721-728
    • (1996) J. Invest. Dermatol. , vol.106 , pp. 721-728
    • Robert, C.1    Muel, B.2    Benoit, A.3    Dubertret, L.4    Sarasin, A.5    Stary, A.6
  • 52
    • 0032503895 scopus 로고    scopus 로고
    • Flow cytometric quantification of UV-induced cell death in a human squamous cell carcinoma-derived cell line: Dose and kinetic studies
    • Schindl, A.; Klosner, G.; Honigsmann, H.; Jori, G.; Calzavara-Pinton, P. C.; Trautinger, F. Flow cytometric quantification of UV-induced cell death in a human squamous cell carcinoma-derived cell line: Dose and kinetic studies J. Photochem. Photobiol. 1998, 44, 97-106
    • (1998) J. Photochem. Photobiol. , vol.44 , pp. 97-106
    • Schindl, A.1    Klosner, G.2    Honigsmann, H.3    Jori, G.4    Calzavara-Pinton, P.C.5    Trautinger, F.6
  • 53
    • 79954590792 scopus 로고    scopus 로고
    • Dual wavelength photoactivation of cAMP- and cGMP-dependent protein kinase signaling pathways
    • Priestman, M. A.; Sun, L. A.; Lawrence, D. S. Dual wavelength photoactivation of cAMP- and cGMP-dependent protein kinase signaling pathways ACS Chem. Biol. 2011, 6, 377-384
    • (2011) ACS Chem. Biol. , vol.6 , pp. 377-384
    • Priestman, M.A.1    Sun, L.A.2    Lawrence, D.S.3
  • 56
    • 34547398009 scopus 로고    scopus 로고
    • Mechanism of photocleavage of (coumarin-4-yl)methyl esters
    • Schmidt, R.; Geissler, D.; Hagen, V.; Bendig, J. Mechanism of photocleavage of (coumarin-4-yl)methyl esters J. Phys. Chem. A 2007, 111, 5768-5874
    • (2007) J. Phys. Chem. A , vol.111 , pp. 5768-5874
    • Schmidt, R.1    Geissler, D.2    Hagen, V.3    Bendig, J.4
  • 57
    • 80052201328 scopus 로고    scopus 로고
    • Coumarin-caged dG for improved wavelength-selective uncaging of DNA
    • Menge, C.; Heckel, A. Coumarin-caged dG for improved wavelength-selective uncaging of DNA Org. Lett. 2011, 13, 4620-4623
    • (2011) Org. Lett. , vol.13 , pp. 4620-4623
    • Menge, C.1    Heckel, A.2
  • 59
    • 77749246428 scopus 로고    scopus 로고
    • Improved synthesis of the two-photon caging group 3-nitro-2- ethyldibenzofuran and its application to a caged thymidine phosphoramidite
    • Lusic, H.; Uprety, R.; Deiters, A. Improved synthesis of the two-photon caging group 3-nitro-2-ethyldibenzofuran and its application to a caged thymidine phosphoramidite Org. Lett. 2010, 916-919
    • (2010) Org. Lett. , pp. 916-919
    • Lusic, H.1    Uprety, R.2    Deiters, A.3
  • 60
    • 70349556712 scopus 로고    scopus 로고
    • Photochemical regulation of restriction endonuclease activity
    • Young, D.; Govan, J.; Lively, M.; Deiters, A. Photochemical regulation of restriction endonuclease activity ChemBioChem 2009, 10, 1612-1616
    • (2009) ChemBioChem , vol.10 , pp. 1612-1616
    • Young, D.1    Govan, J.2    Lively, M.3    Deiters, A.4
  • 62
    • 59649096773 scopus 로고    scopus 로고
    • Gene silencing in mammalian cells with light-activated antisense agents
    • Young, D.; Lusic, H.; Lively, M.; Yoder, J.; Deiters, A. Gene silencing in mammalian cells with light-activated antisense agents ChemBioChem 2008, 9, 2937-2940
    • (2008) ChemBioChem , vol.9 , pp. 2937-2940
    • Young, D.1    Lusic, H.2    Lively, M.3    Yoder, J.4    Deiters, A.5
  • 63
    • 84857721181 scopus 로고    scopus 로고
    • DNA computation: A photochemically controlled and gate
    • Prokup, A.; Hemphill, J.; Deiters, A. DNA computation: A photochemically controlled AND gate J. Am. Chem. Soc. 2012, 134, 3810-3815
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 3810-3815
    • Prokup, A.1    Hemphill, J.2    Deiters, A.3
  • 64
    • 0033288753 scopus 로고    scopus 로고
    • Photo-regulated duplex- and triplex-formation of the modified DNA carrying azobenzene
    • Asanuma, H.; Liang, X.; Yoshida, T.; Ito, T.; Komiyama, M. Photo-regulated duplex- and triplex-formation of the modified DNA carrying azobenzene Nucleic Acids Symp. Ser. 1999, 135-136
    • (1999) Nucleic Acids Symp. Ser. , pp. 135-136
    • Asanuma, H.1    Liang, X.2    Yoshida, T.3    Ito, T.4    Komiyama, M.5
  • 65
    • 34347230540 scopus 로고    scopus 로고
    • Synthesis of azobenzene-tethered DNA for reversible photo-regulation of DNA functions: Hybridization and transcription
    • Asanuma, H.; Liang, X.; Nishioka, H.; Matsunaga, D.; Liu, M.; Komiyama, M. Synthesis of azobenzene-tethered DNA for reversible photo-regulation of DNA functions: hybridization and transcription Nat. Protoc. 2007, 2, 203-212
    • (2007) Nat. Protoc. , vol.2 , pp. 203-212
    • Asanuma, H.1    Liang, X.2    Nishioka, H.3    Matsunaga, D.4    Liu, M.5    Komiyama, M.6
  • 67
    • 80052822593 scopus 로고    scopus 로고
    • Spatiotemporal control of embryonic gene expression using caged morpholinos
    • Shestopalov, I. A.; Chen, J. K. Spatiotemporal control of embryonic gene expression using caged morpholinos Zebrafish 2011, 104, 151-172
    • (2011) Zebrafish , vol.104 , pp. 151-172
    • Shestopalov, I.A.1    Chen, J.K.2
  • 68
    • 33846539799 scopus 로고    scopus 로고
    • Regulating gene expression with light-activated oligonucleotides
    • Tang, X. J.; Dmochowski, I. J. Regulating gene expression with light-activated oligonucleotides Mol. Biosyst. 2007, 3, 100-110
    • (2007) Mol. Biosyst. , vol.3 , pp. 100-110
    • Tang, X.J.1    Dmochowski, I.J.2
  • 72
    • 77953397715 scopus 로고    scopus 로고
    • DNA minicircles connected via G-quadruplex interaction modules
    • Goncalves, D. P. N.; Schmidt, T. L.; Koeppel, M. B.; Heckel, A. DNA minicircles connected via G-quadruplex interaction modules Small 2010, 6, 1347-1352
    • (2010) Small , vol.6 , pp. 1347-1352
    • Goncalves, D.P.N.1    Schmidt, T.L.2    Koeppel, M.B.3    Heckel, A.4
  • 73
    • 77956647143 scopus 로고    scopus 로고
    • Shaping up nucleic acid computation
    • Chen, X.; Ellington, A. Shaping up nucleic acid computation Curr. Opin. Biotechnol. 2010, 21, 392-400
    • (2010) Curr. Opin. Biotechnol. , vol.21 , pp. 392-400
    • Chen, X.1    Ellington, A.2
  • 75
    • 79251621970 scopus 로고    scopus 로고
    • Dynamic DNA nanotechnology using strand-displacement reactions
    • Zhang, D. Y.; Seelig, G. Dynamic DNA nanotechnology using strand-displacement reactions Nat. Chem. 2011, 3, 103-113
    • (2011) Nat. Chem. , vol.3 , pp. 103-113
    • Zhang, D.Y.1    Seelig, G.2
  • 76
    • 43249099500 scopus 로고    scopus 로고
    • Twenty-five years of quantitative PCR for gene expression analysis
    • VanGuilder, H. D.; Vrana, K. E.; Freeman, W. M. Twenty-five years of quantitative PCR for gene expression analysis Biotechniques 2008, 44, 619-626
    • (2008) Biotechniques , vol.44 , pp. 619-626
    • Vanguilder, H.D.1    Vrana, K.E.2    Freeman, W.M.3
  • 77
    • 0025785461 scopus 로고
    • Recent advances in the polymerase chain-reaction
    • Erlich, H. A.; Gelfand, D.; Sninsky, J. J. Recent advances in the polymerase chain-reaction Science 1991, 252, 1643-1651
    • (1991) Science , vol.252 , pp. 1643-1651
    • Erlich, H.A.1    Gelfand, D.2    Sninsky, J.J.3
  • 78
    • 0026603267 scopus 로고
    • Prevention of pre-PCR mis-priming and primer dimeriztion improves low-copy-number amplifications
    • Chou, Q.; Russell, M.; Birch, D. E.; Raymond, J.; Bloch, W. Prevention of pre-PCR mis-priming and primer dimeriztion improves low-copy-number amplifications Nucleic Acids Res. 1992, 20, 1717-1723
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1717-1723
    • Chou, Q.1    Russell, M.2    Birch, D.E.3    Raymond, J.4    Bloch, W.5
  • 79
    • 49849099211 scopus 로고    scopus 로고
    • Targeting transcription factors for therapeutic benefit
    • Brennan, P.; Donev, R.; Hewamana, S. Targeting transcription factors for therapeutic benefit Mol. Biosyst. 2008, 4, 909-919
    • (2008) Mol. Biosyst. , vol.4 , pp. 909-919
    • Brennan, P.1    Donev, R.2    Hewamana, S.3
  • 80
    • 0032103247 scopus 로고    scopus 로고
    • Application of transcription factor "decoy" strategy as means of gene therapy and study of gene expression in cardiovascular disease
    • Morishita, R.; Higaki, J.; Tomita, N.; Ogihara, T. Application of transcription factor "decoy" strategy as means of gene therapy and study of gene expression in cardiovascular disease Circ. Res. 1998, 82, 1023-1028
    • (1998) Circ. Res. , vol.82 , pp. 1023-1028
    • Morishita, R.1    Higaki, J.2    Tomita, N.3    Ogihara, T.4
  • 81
    • 85047692457 scopus 로고    scopus 로고
    • The potential for gene repair via triple helix formation
    • Seidman, M. M.; Glazer, P. M. The potential for gene repair via triple helix formation J. Clin. Invest. 2003, 112, 487-494
    • (2003) J. Clin. Invest. , vol.112 , pp. 487-494
    • Seidman, M.M.1    Glazer, P.M.2
  • 82
    • 79954611162 scopus 로고    scopus 로고
    • Oligo/polynucleotide-based gene modification: Strategies and therapeutic potential
    • Sargent, R. G.; Kim, S.; Gruenert, D. C. Oligo/polynucleotide-based gene modification: strategies and therapeutic potential Oligonucleotides 2011, 21, 55-75
    • (2011) Oligonucleotides , vol.21 , pp. 55-75
    • Sargent, R.G.1    Kim, S.2    Gruenert, D.C.3
  • 84
    • 0026349087 scopus 로고
    • The anti-gene stratege - Control of gene-expression by triplex-forming-oligonucleotides
    • Helene, C. The anti-gene stratege-control of gene-expression by triplex-forming-oligonucleotides Anti-Cancer Drug Des. 1991, 6, 569-584
    • (1991) Anti-Cancer Drug Des. , vol.6 , pp. 569-584
    • Helene, C.1
  • 85
    • 0025832056 scopus 로고
    • Translational control in mammalian-cells
    • Hershey, J. Translational control in mammalian-cells Annu. Rev. Biochem. 1991, 60, 717-755
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 717-755
    • Hershey, J.1
  • 86
    • 0037733977 scopus 로고    scopus 로고
    • Antisense technologies. Improvement through novel chemical modifications
    • Kurreck, J. Antisense technologies. Improvement through novel chemical modifications Eur. J. Biochem. 2003, 270, 1628-1644
    • (2003) Eur. J. Biochem. , vol.270 , pp. 1628-1644
    • Kurreck, J.1
  • 87
    • 84862821818 scopus 로고    scopus 로고
    • Spatiotemporal resolution of theNtla transcriptome in axial mesoderm development
    • Shestopalov, I. A.; Pitt, C. L. W.; Chen, J. K. Spatiotemporal resolution of theNtla transcriptome in axial mesoderm development Nat. Chem. Biol. 2012, 8, 270-276
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 270-276
    • Shestopalov, I.A.1    Pitt, C.L.W.2    Chen, J.K.3
  • 88
    • 77951673091 scopus 로고    scopus 로고
    • Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells
    • Young, D. D.; Lively, M. O.; Deiters, A. Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells J. Am. Chem. Soc. 2010, 132, 6183-6193
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 6183-6193
    • Young, D.D.1    Lively, M.O.2    Deiters, A.3
  • 89
    • 80054795593 scopus 로고    scopus 로고
    • Stabilization and photochemical regulation of antisense agents through PEGylation
    • Govan, J. M.; McIver, A. L.; Deiters, A. Stabilization and photochemical regulation of antisense agents through PEGylation Bioconjugate Chem. 2011, 22, 2136-2142
    • (2011) Bioconjugate Chem. , vol.22 , pp. 2136-2142
    • Govan, J.M.1    McIver, A.L.2    Deiters, A.3
  • 90
    • 26844508330 scopus 로고    scopus 로고
    • Photoregulation of DNA polymerase i (Klenow) with caged fluorescent oligodeoxynucleotides
    • Tang, X. J.; Richards, J. L.; Peritz, A. E.; Dmochowski, I. J. Photoregulation of DNA polymerase I (Klenow) with caged fluorescent oligodeoxynucleotides Bioorg. Med. Chem. Lett. 2005, 15, 5303-5306
    • (2005) Bioorg. Med. Chem. Lett. , vol.15 , pp. 5303-5306
    • Tang, X.J.1    Richards, J.L.2    Peritz, A.E.3    Dmochowski, I.J.4
  • 91
    • 66049090107 scopus 로고    scopus 로고
    • Restriction enzyme-free mutagenesis via the light regulation of DNA polymerization
    • Young, D.; Lusic, H.; Lively, M.; Deiters, A. Restriction enzyme-free mutagenesis via the light regulation of DNA polymerization Nucleic Acids Res. 2009, 37, e58
    • (2009) Nucleic Acids Res. , vol.37 , pp. 58
    • Young, D.1    Lusic, H.2    Lively, M.3    Deiters, A.4
  • 92
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • Kuzminov, A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda Microbiol. Mol. Biol. Rev. 1999, 63, 751-813
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 93
    • 84862913447 scopus 로고    scopus 로고
    • Enzyme Treatment-Free and Ligation-Independent Cloning Using Caged Primers in Polymerase Chain Reactions
    • Kuzuya, A.; Tanaka, K.; Katada, H.; Komiyama, M. Enzyme Treatment-Free and Ligation-Independent Cloning Using Caged Primers in Polymerase Chain Reactions Molecules 2012, 17, 328-340
    • (2012) Molecules , vol.17 , pp. 328-340
    • Kuzuya, A.1    Tanaka, K.2    Katada, H.3    Komiyama, M.4
  • 94
    • 0028675028 scopus 로고
    • A DNA enzyme that cleaves RNA
    • Breaker, R. R.; Joyce, G. F. A DNA enzyme that cleaves RNA Chem. Biol. 1994, 1, 223-229
    • (1994) Chem. Biol. , vol.1 , pp. 223-229
    • Breaker, R.R.1    Joyce, G.F.2
  • 95
    • 0034804143 scopus 로고    scopus 로고
    • RNA cleavage by the 10-23 DNA enzyme
    • Joyce, G. F. RNA cleavage by the 10-23 DNA enzyme Ribonucleases 2001, 341, 503-517
    • (2001) Ribonucleases , vol.341 , pp. 503-517
    • Joyce, G.F.1
  • 96
    • 44349092480 scopus 로고    scopus 로고
    • DNAzymes for sensing, nanobiotechnology and logic gate applications
    • Willner, I.; Shlyahovsky, B.; Zayats, M.; Willner, B. DNAzymes for sensing, nanobiotechnology and logic gate applications Chem. Soc. Rev. 2008, 37, 1153-1165
    • (2008) Chem. Soc. Rev. , vol.37 , pp. 1153-1165
    • Willner, I.1    Shlyahovsky, B.2    Zayats, M.3    Willner, B.4
  • 97
    • 77957362844 scopus 로고    scopus 로고
    • DNA as a versatile chemical component for catalysis, encoding, and stereocontrol
    • Silverman, S. K. DNA as a versatile chemical component for catalysis, encoding, and stereocontrol Angew. Chem., Int. Ed. 2010, 49, 7180-7201
    • (2010) Angew. Chem., Int. Ed. , vol.49 , pp. 7180-7201
    • Silverman, S.K.1
  • 98
    • 84874594454 scopus 로고    scopus 로고
    • Combinatorial nucleoside-deletion-scanning mutagenesis of functional DNA
    • Samanta, B.; Hobartner, C. Combinatorial nucleoside-deletion-scanning mutagenesis of functional DNA Angew. Chem., Int. Ed. 2013, 52, 2995-2999
    • (2013) Angew. Chem., Int. Ed. , vol.52 , pp. 2995-2999
    • Samanta, B.1    Hobartner, C.2
  • 99
    • 0032755647 scopus 로고    scopus 로고
    • Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP
    • Koizumi, M.; Soukup, G. A.; Kerr, J. N. Q.; Breaker, R. R. Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP Nat. Struct. Biol. 1999, 6, 1062-1071
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 1062-1071
    • Koizumi, M.1    Soukup, G.A.2    Kerr, J.N.Q.3    Breaker, R.R.4
  • 101
    • 84856226307 scopus 로고    scopus 로고
    • Mismatch discrimination and efficient photomodulation with split 10-23 DNAzymes
    • Ruble, B. K.; Richards, J. L.; Cheung-Lau, J. C.; Dmochowski, I. J. Mismatch discrimination and efficient photomodulation with split 10-23 DNAzymes Inorg. Chim. Acta 2012, 380, 386-391
    • (2012) Inorg. Chim. Acta , vol.380 , pp. 386-391
    • Ruble, B.K.1    Richards, J.L.2    Cheung-Lau, J.C.3    Dmochowski, I.J.4
  • 102
    • 33645881343 scopus 로고    scopus 로고
    • Photochemical hammerhead ribozyme activation
    • Young, D.; Deiters, A. Photochemical hammerhead ribozyme activation Bioorg. Med. Chem. Lett. 2006, 2658-2661
    • (2006) Bioorg. Med. Chem. Lett. , pp. 2658-2661
    • Young, D.1    Deiters, A.2
  • 103
    • 58649102234 scopus 로고    scopus 로고
    • Light-activation of gene function in mammalian cells via ribozymes
    • Young, D.; Garner, R.; Yoder, J.; Deiters, A. Light-activation of gene function in mammalian cells via ribozymes Chem. Commun. 2009, 568-570
    • (2009) Chem. Commun. , pp. 568-570
    • Young, D.1    Garner, R.2    Yoder, J.3    Deiters, A.4
  • 104
    • 0032169981 scopus 로고    scopus 로고
    • DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex
    • Travascio, P.; Li, Y. F.; Sen, D. DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex Chem. Biol. 1998, 5, 505-517
    • (1998) Chem. Biol. , vol.5 , pp. 505-517
    • Travascio, P.1    Li, Y.F.2    Sen, D.3
  • 106
    • 84892720809 scopus 로고    scopus 로고
    • DNA Computation in Mammalian Cells: MicroRNA Logic Operations
    • in press.
    • Hemphill, J.; Deiters, A., DNA Computation in Mammalian Cells: MicroRNA Logic Operations. J. Am. Chem. Soc. in press.
    • J. Am. Chem. Soc.
    • Hemphill, J.1    Deiters, A.2
  • 107
    • 84857227818 scopus 로고    scopus 로고
    • Light-activatable molecular beacons with a caged loop sequence
    • Joshi, K. B.; Vlachos, A.; Mikat, V.; Deller, T.; Heckel, A. Light-activatable molecular beacons with a caged loop sequence Chem. Commun. 2012, 48, 2746-2748
    • (2012) Chem. Commun. , vol.48 , pp. 2746-2748
    • Joshi, K.B.1    Vlachos, A.2    Mikat, V.3    Deller, T.4    Heckel, A.5
  • 108
    • 84879053627 scopus 로고    scopus 로고
    • Sox10-dependent neural crest origin of olfactory microvillous neurons in zebrafish
    • e00336
    • Saxena, A.; Peng, B. N.; Bronner, M. E. Sox10-dependent neural crest origin of olfactory microvillous neurons in zebrafish Elife 2013, 2 e00336
    • (2013) Elife , vol.2
    • Saxena, A.1    Peng, B.N.2    Bronner, M.E.3
  • 110
    • 84874878135 scopus 로고    scopus 로고
    • Nucleoside-based diarylethene photoswitches and their facile incorporation into photoswitchable DNA
    • Cahova, H.; Jaeschke, A. Nucleoside-based diarylethene photoswitches and their facile incorporation into photoswitchable DNA Angew. Chem., Int. Ed. 2013, 52, 3186-3190
    • (2013) Angew. Chem., Int. Ed. , vol.52 , pp. 3186-3190
    • Cahova, H.1    Jaeschke, A.2
  • 111
    • 84878969824 scopus 로고    scopus 로고
    • Nucleobase-caged peptide nucleic acids: PNA/PNA duplex destabilization and light-triggered PNA/PNA recognition
    • Guha, S.; Graf, J.; Göricke, B.; Diederichsen, U. Nucleobase-caged peptide nucleic acids: PNA/PNA duplex destabilization and light-triggered PNA/PNA recognition J. Pept. Sci. 2013, 19, 415-422
    • (2013) J. Pept. Sci. , vol.19 , pp. 415-422
    • Guha, S.1    Graf, J.2    Göricke, B.3    Diederichsen, U.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.