메뉴 건너뛰기




Volumn 41, Issue 1, 2013, Pages 677-686

Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; GREEN FLUORESCENT PROTEIN; PHOSPHOROTHIOIC ACID; RIBONUCLEASE H; RNA; SINGLE STRANDED RNA;

EID: 84871727314     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks996     Document Type: Article
Times cited : (60)

References (50)
  • 1
    • 0027480532 scopus 로고
    • Controlling cell chemistry with caged compounds
    • Adams, S.R. and Tsien, R.Y. (1993) Controlling cell chemistry with caged compounds. Annu. Rev. Physiol., 55, 755-784.
    • (1993) Annu. Rev. Physiol. , vol.55 , pp. 755-784
    • Adams, S.R.1    Tsien, R.Y.2
  • 2
    • 0033549733 scopus 로고    scopus 로고
    • Photoregulation of the formation and dissociation of a DNA duplex by using the cis-trans isomerization of azobenzene
    • Asanuma, H., Ito, T., Yoshida, T., Liang, X. and Komiyama, M. (1999) Photoregulation of the formation and dissociation of a DNA duplex by using the cis-trans isomerization of azobenzene. Angew. Chem. Int. Ed. Engl., 38, 2393-2395.
    • (1999) Angew. Chem. Int. Ed. Engl. , vol.38 , pp. 2393-2395
    • Asanuma, H.1    Ito, T.2    Yoshida, T.3    Liang, X.4    Komiyama, M.5
  • 3
    • 0036902245 scopus 로고    scopus 로고
    • Photoregulation of the transcription reaction of T7 RNA polymerase by tethering an azobenzene to the promoter
    • Asanuma, H., Tamaru, D., Yamazawa, A., Liu, M. and Komiyama, M. (2002) Photoregulation of the transcription reaction of T7 RNA polymerase by tethering an azobenzene to the promoter. ChemBioChem, 8, 786-789.
    • (2002) ChemBioChem , vol.8 , pp. 786-789
    • Asanuma, H.1    Tamaru, D.2    Yamazawa, A.3    Liu, M.4    Komiyama, M.5
  • 4
    • 0032125579 scopus 로고    scopus 로고
    • Caged RNA: Photo-control of a ribozyme reaction
    • Chaulk, S.G. and MacMillan, A.M. (1998) Caged RNA: photo-control of a ribozyme reaction. Nucleic Acids Res., 26, 3173-3178.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3173-3178
    • Chaulk, S.G.1    MacMillan, A.M.2
  • 5
    • 34547863548 scopus 로고    scopus 로고
    • Taking control of gene expression with light-activated oligonucleotides
    • Dmochowski, I.J. and Tang, X. (2007) Taking control of gene expression with light-activated oligonucleotides. Biotechniques, 43, 161-171.
    • (2007) Biotechniques , vol.43 , pp. 161-171
    • Dmochowski, I.J.1    Tang, X.2
  • 7
    • 12444263290 scopus 로고    scopus 로고
    • Light regulation of aptamer activity: An anti-thrombin aptamer with caged thymidine nucleobases
    • Heckel, A. and Mayer, G. (2005) Light regulation of aptamer activity: an anti-thrombin aptamer with caged thymidine nucleobases. J. Am. Chem. Soc., 127, 822-823.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 822-823
    • Heckel, A.1    Mayer, G.2
  • 8
    • 27844578341 scopus 로고    scopus 로고
    • Modulation of RNA tertiary folding by incorporation of caged nucleotides
    • Hoebartner, C. and Silverman, S.K. (2005) Modulation of RNA tertiary folding by incorporation of caged nucleotides. Angew. Chem. Int. Ed. Engl., 44, 7305-7309.
    • (2005) Angew. Chem. Int. Ed. Engl. , vol.44 , pp. 7305-7309
    • Hoebartner, C.1    Silverman, S.K.2
  • 9
    • 67249113148 scopus 로고    scopus 로고
    • Caged siRNAs for spatiotemporal control of gene silencin
    • Casey, J.P., Blidner, R.A. and Monroe, W.T. (2009) Caged siRNAs for spatiotemporal control of gene silencin. Mol. Pharmaceutics, 6, 669-685.
    • (2009) Mol. Pharmaceutics , vol.6 , pp. 669-685
    • Casey, J.P.1    Blidner, R.A.2    Monroe, W.T.3
  • 10
    • 33746217388 scopus 로고    scopus 로고
    • Reversible photocontrol of deoxyribozyme-catalyzed RNA cleavage under multiple-turnover conditions
    • Keiper, S. and Vyle, J.S. (2006) Reversible photocontrol of deoxyribozyme-catalyzed RNA cleavage under multiple-turnover conditions. Angew. Chem. Int. Ed. Engl., 45, 3306-3309.
    • (2006) Angew. Chem. Int. Ed. Engl. , vol.45 , pp. 3306-3309
    • Keiper, S.1    Vyle, J.S.2
  • 11
    • 3843088438 scopus 로고    scopus 로고
    • Light-regulated catalysis by an RNA-cleaving deoxyribozyme
    • Liu, Y. and Sen, D. (2004) Light-regulated catalysis by an RNA-cleaving deoxyribozyme. J. Mol. Biol., 341, 887-892.
    • (2004) J. Mol. Biol. , vol.341 , pp. 887-892
    • Liu, Y.1    Sen, D.2
  • 12
    • 4544379091 scopus 로고    scopus 로고
    • Photoregulation of RNA digestion by RNase H with azobenzene-tethered DNA
    • Matsunaga, D., Asanuma, H. and Komiyama, M. (2004) Photoregulation of RNA digestion by RNase H with azobenzene-tethered DNA. J. Am. Chem. Soc., 126, 11452-11453.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 11452-11453
    • Matsunaga, D.1    Asanuma, H.2    Komiyama, M.3
  • 13
    • 36248965157 scopus 로고    scopus 로고
    • Light-dependent RNA interference with nucleobase-caged siR
    • Mikat, V. and Heckel, A. (2007) Light-dependent RNA interference with nucleobase-caged siR. RNA, 13, 2341-2347.
    • (2007) RNA , vol.13 , pp. 2341-2347
    • Mikat, V.1    Heckel, A.2
  • 17
    • 34548671921 scopus 로고    scopus 로고
    • Light-controlled gene silencing in zebrafish embryos
    • Shestopalov, I.A., Sinha, S. and Chen, J.K. (2007) Light-controlled gene silencing in zebrafish embryos. Nature Chem. Biol., 3, 650-651.
    • (2007) Nature Chem. Biol. , vol.3 , pp. 650-651
    • Shestopalov, I.A.1    Sinha, S.2    Chen, J.K.3
  • 18
    • 39149108480 scopus 로고    scopus 로고
    • Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides
    • Tang, X., Swaminathan, J., Gewirtz, A.M. and Dmochowski, I.J. (2008) Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides. Nucleic Acids Res., 36, 559-569.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 559-569
    • Tang, X.1    Swaminathan, J.2    Gewirtz, A.M.3    Dmochowski, I.J.4
  • 19
    • 33746238101 scopus 로고    scopus 로고
    • Controlling RNA digestion by RNase H with a light-activated DNA hairpin
    • Tang, X. and Dmochowski, I.J. (2006) Controlling RNA digestion by RNase H with a light-activated DNA hairpin. Angew. Chem. Int. Ed. Engl., 45, 3523-3526.
    • (2006) Angew. Chem. Int. Ed. Engl. , vol.45 , pp. 3523-3526
    • Tang, X.1    Dmochowski, I.J.2
  • 20
    • 34548756202 scopus 로고    scopus 로고
    • Regulating gene expression in zebrafish embryos using light-activated, negatively charged peptide nucleic acids
    • Tang, X., Maegawa, S., Weinberg, E.S. and Dmochowski, I.J. (2007) Regulating gene expression in zebrafish embryos using light-activated, negatively charged peptide nucleic acids. J. Am Chem. Soc., 129, 11000-11001.
    • (2007) J. Am Chem. Soc. , vol.129 , pp. 11000-11001
    • Tang, X.1    Maegawa, S.2    Weinberg, E.S.3    Dmochowski, I.J.4
  • 21
    • 34547898002 scopus 로고    scopus 로고
    • Synthesis of light-activated antisense oligodeoxynucleotide
    • Tang, X. and Dmochowski, I.J. (2007) Synthesis of light-activated antisense oligodeoxynucleotide. Nat. Protoc., 1, 3041-3048.
    • (2007) Nat. Protoc. , vol.1 , pp. 3041-3048
    • Tang, X.1    Dmochowski, I.J.2
  • 22
    • 33846539799 scopus 로고    scopus 로고
    • Regulating gene expression with light-activated oligonucleotides
    • Tang, X. and Dmochowski, I.J. (2007) Regulating gene expression with light-activated oligonucleotides. Mol. BioSyst., 3, 100-110.
    • (2007) Mol. BioSyst. , vol.3 , pp. 100-110
    • Tang, X.1    Dmochowski, I.J.2
  • 23
    • 33645881343 scopus 로고    scopus 로고
    • Photochemical hammerhead ribozyme activation
    • Young, D.D. and Deiters, A. (2006) Photochemical hammerhead ribozyme activation. Bioorg. Med. Chem. Lett., 16, 2658-2661.
    • (2006) Bioorg. Med. Chem. Lett. , vol.16 , pp. 2658-2661
    • Young, D.D.1    Deiters, A.2
  • 25
    • 4544259346 scopus 로고    scopus 로고
    • Light-activated transcription and repression by using photocaged SERMs
    • Shi, Y. and Koh, J.T. (2004) Light-activated transcription and repression by using photocaged SERMs. ChemBioChem, 5, 788-796.
    • (2004) ChemBioChem , vol.5 , pp. 788-796
    • Shi, Y.1    Koh, J.T.2
  • 26
    • 84856226307 scopus 로고    scopus 로고
    • Mismatch discrimination and efficient photomodulation with split 10-23 DNAzymes
    • Ruble, B.K., Richards, J.L., Cheung-Lau, J.C. and Dmochowski, I.J. (2012) Mismatch discrimination and efficient photomodulation with split 10-23 DNAzymes. Inorg. Chem. Acta, 380, 386-391.
    • (2012) Inorg. Chem. Acta , vol.380 , pp. 386-391
    • Ruble, B.K.1    Richards, J.L.2    Cheung-Lau, J.C.3    Dmochowski, I.J.4
  • 27
    • 0034928842 scopus 로고    scopus 로고
    • Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos
    • Ando, H., Furuta, T., Tsien, R.Y. and Okamoto, H. (2001) Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos. Nat. Genet., 28, 317-325.
    • (2001) Nat. Genet. , vol.28 , pp. 317-325
    • Ando, H.1    Furuta, T.2    Tsien, R.Y.3    Okamoto, H.4
  • 30
    • 67949124649 scopus 로고    scopus 로고
    • Light-activated RNA interference using double-stranded siRNA precursors modified using a remarkable regiospecificity of diazo-based photolabile groups
    • Shah, S., Jain, P.K., Kala, A., Karunakaran, D. and Friedman, S.H. (2009) Light-activated RNA interference using double-stranded siRNA precursors modified using a remarkable regiospecificity of diazo-based photolabile groups. Nucleic Acids Res., 37, 4508-4517.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4508-4517
    • Shah, S.1    Jain, P.K.2    Kala, A.3    Karunakaran, D.4    Friedman, S.H.5
  • 31
    • 84864147866 scopus 로고    scopus 로고
    • Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells
    • Govan, J.M., Uprety, R., Hemphill, J., Lively, M.O. and Deiters, A. (2012) Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells. ACS Chem. Biol., 7, 1247-1256.
    • (2012) ACS Chem. Biol. , vol.7 , pp. 1247-1256
    • Govan, J.M.1    Uprety, R.2    Hemphill, J.3    Lively, M.O.4    Deiters, A.5
  • 32
    • 0033572680 scopus 로고    scopus 로고
    • A caged ligatable DNA strand break
    • Zhang, K. and Taylor, J.-S. (1999) A caged ligatable DNA strand break. J. Am. Chem. Soc., 121, 11579-11580.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 11579-11580
    • Zhang, K.1    Taylor, J.-S.2
  • 33
    • 84857812439 scopus 로고    scopus 로고
    • Temporal and spatial regulation of microRNA activity with photoactivatable cantimirs
    • Zheng, G., Cochella, L., Liu, J., Hobert, O. and Li, W. (2011) Temporal and spatial regulation of microRNA activity with photoactivatable cantimirs. ACS Chem. Biol., 6, 1332-1338.
    • (2011) ACS Chem. Biol. , vol.6 , pp. 1332-1338
    • Zheng, G.1    Cochella, L.2    Liu, J.3    Hobert, O.4    Li, W.5
  • 34
    • 73249117025 scopus 로고    scopus 로고
    • TM: A novel light-activated reagent for controlling gene expression in zebrafish
    • TM: a novel light-activated reagent for controlling gene expression in zebrafish. Genesis, 47, 736-743.
    • (2009) Genesis , vol.47 , pp. 736-743
    • Tomasini, A.J.1    Schuler, A.D.2    Zebala, J.A.3    Mayer, A.N.4
  • 37
    • 84870588484 scopus 로고    scopus 로고
    • Manipulation of gene expression in zebrafish using caged circular morpholino oligomers
    • Wang, Y., Wu, L., Wang, P., Lv, C., Yang, Z. and Tang, X. (2012) Manipulation of gene expression in zebrafish using caged circular morpholino oligomers. Nucleic Acids Res., 40, 11155-11162.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11155-11162
    • Wang, Y.1    Wu, L.2    Wang, P.3    Lv, C.4    Yang, Z.5    Tang, X.6
  • 38
    • 77954350442 scopus 로고    scopus 로고
    • Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides
    • Tang, X., Su, M., Yu, L., Lv, C., Wang, J. and Li, Z. (2010) Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides. Nucleic Acids Res., 38, 3848-3855.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3848-3855
    • Tang, X.1    Su, M.2    Yu, L.3    Lv, C.4    Wang, J.5    Li, Z.6
  • 40
    • 0029116051 scopus 로고
    • Design and synthesis of a versatile photocleavable DNA building block. Application to phototriggered hybridization
    • Ordoukhanian, P. and Taylor, J.-S. (1995) Design and synthesis of a versatile photocleavable DNA building block. Application to phototriggered hybridization. J. Am. Chem. Soc., 117, 9570-9571.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 9570-9571
    • Ordoukhanian, P.1    Taylor, J.-S.2
  • 41
    • 77954350442 scopus 로고    scopus 로고
    • Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides
    • Tang, X., Su, M., Yu, L., Lv, C., Wang, J. and Li, Z. (2010) Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides. Nucleic Acids Res., 38, 3848-3855.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3848-3855
    • Tang, X.1    Su, M.2    Yu, L.3    Lv, C.4    Wang, J.5    Li, Z.6
  • 43
    • 0037058832 scopus 로고    scopus 로고
    • Participation of active-site carboxylates of Escherichia coli DNA polymerase i (Klenow fragment) in the formation of a prepolymerase ternary complex
    • Gangurde, R. and Modak, M.J. (2002) Participation of active-site carboxylates of Escherichia coli DNA polymerase I (Klenow fragment) in the formation of a prepolymerase ternary complex. Biochemistry, 41, 14552-14559.
    • (2002) Biochemistry , vol.41 , pp. 14552-14559
    • Gangurde, R.1    Modak, M.J.2
  • 45
    • 61349178533 scopus 로고    scopus 로고
    • Ribonuclease H: Molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes
    • Tadokoro, T. and Kanaya, S. (2009) Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes. FEBS J., 276, 1482-1493.
    • (2009) FEBS J. , vol.276 , pp. 1482-1493
    • Tadokoro, T.1    Kanaya, S.2
  • 46
    • 0035962892 scopus 로고    scopus 로고
    • A critical survey o the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase H
    • Zamaratski, E., Pradeepkumar, P.I. and Chattopadhyaya, J. (2001) A critical survey o the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase H. J. Biochem. Biophys. Meth., 48, 189.
    • (2001) J. Biochem. Biophys. Meth. , vol.48 , pp. 189
    • Zamaratski, E.1    Pradeepkumar, P.I.2    Chattopadhyaya, J.3
  • 47
    • 0032515930 scopus 로고    scopus 로고
    • RNase H1 can catalyse RNA/DNA formation and cleavage with stable hairpin or duplex DNA oligomers
    • Li, J. and Wartell, R.M. (1998) RNase H1 can catalyse RNA/DNA formation and cleavage with stable hairpin or duplex DNA oligomers. Biochemistry, 37, 5154-5161.
    • (1998) Biochemistry , vol.37 , pp. 5154-5161
    • Li, J.1    Wartell, R.M.2
  • 48
    • 78149274251 scopus 로고    scopus 로고
    • Photocaged morpholino oligomers for the light-regulation of gene function in zebrafish and Xenopus embryos
    • Deiters, A., Garner, R.A., Lusic, H., Govan, J.M., Dush, M., Nascone-Yoder, N.M. and Yoder, J.A. (2010) Photocaged morpholino oligomers for the light-regulation of gene function in zebrafish and Xenopus embryos. J. Am. Chem. Soc., 132, 15644-15650.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 15644-15650
    • Deiters, A.1    Garner, R.A.2    Lusic, H.3    Govan, J.M.4    Dush, M.5    Nascone-Yoder, N.M.6    Yoder, J.A.7
  • 49
    • 79851495876 scopus 로고    scopus 로고
    • Patterning of gene expression using new photolabile groups applied to light activated RNAi
    • Jain, P.K., Shah, S. and Friedman, S.H. (2011) Patterning of gene expression using new photolabile groups applied to light activated RNAi. J. Am. Chem. Soc., 133, 440-446.
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 440-446
    • Jain, P.K.1    Shah, S.2    Friedman, S.H.3
  • 50
    • 77951673091 scopus 로고    scopus 로고
    • Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells
    • Young, D.D., Lively, M.O. and Deiters, A. (2010) Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells. J. Am. Chem. Soc., 132, 6183-6193.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 6183-6193
    • Young, D.D.1    Lively, M.O.2    Deiters, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.