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Volumn 25, Issue 1, 2014, Pages 105-118

A bioinformatics approach identifies signal transducer and activator of transcription-3 and checkpoint kinase 1 as upstream regulators of kidney injury molecule-1 after kidney injury

Author keywords

[No Author keywords available]

Indexed keywords

CHECKPOINT KINASE 1; KIDNEY INJURY MOLECULE 1; KRUPPEL LIKE FACTOR 4; MESSENGER RNA; REACTIVE OXYGEN METABOLITE; SMALL INTERFERING RNA; STAT3 PROTEIN;

EID: 84891802904     PISSN: 10466673     EISSN: 15333450     Source Type: Journal    
DOI: 10.1681/ASN.2013020161     Document Type: Article
Times cited : (56)

References (50)
  • 1
    • 0032512724 scopus 로고    scopus 로고
    • Kidney injury molecule-1 (KIM-1), a putative epithelial cell adhesion molecule containing a novel immunoglobulin domain, is up-regulated in renal cells after injury
    • Ichimura T, Bonventre JV, Bailly V, Wei H, Hession CA, Cate RL, SanicolaM: Kidney injury molecule-1 (KIM-1), a putative epithelial cell adhesion molecule containing a novel immunoglobulin domain, is up-regulated in renal cells after injury. J Biol Chem273: 4135-4142, 1998
    • (1998) J Biol Chem , vol.273 , pp. 4135-4142
    • Ichimura, T.1    Bonventre, J.V.2    Bailly, V.3    Wei, H.4    Hession, C.A.5    Cate, R.L.6    Sanicola, M.7
  • 4
    • 33644870877 scopus 로고    scopus 로고
    • Urinary kidney injury molecule-1: A sensitive quantitative biomarker for early detection of kidney tubular injury
    • Vaidya VS, Ramirez V, Ichimura T, Bobadilla NA, Bonventre JV: Urinary kidney injury molecule-1: A sensitive quantitative biomarker for early detection of kidney tubular injury. Am J Physiol Renal Physiol 290: F517-F529, 2006
    • (2006) Am J Physiol Renal Physiol , vol.290
    • Vaidya, V.S.1    Ramirez, V.2    Ichimura, T.3    Bobadilla, N.A.4    Bonventre, J.V.5
  • 6
    • 43049125804 scopus 로고    scopus 로고
    • Kidney injury molecule-1 is a phosphatidylserine receptor that confers a phagocytic phenotype on epithelial cells
    • Ichimura T, Asseldonk EJ, Humphreys BD, Gunaratnam L, Duffield JS, Bonventre JV: Kidney injury molecule-1 is a phosphatidylserine receptor that confers a phagocytic phenotype on epithelial cells. J Clin Invest 118: 1657-1668, 2008
    • (2008) J Clin Invest , vol.118 , pp. 1657-1668
    • Ichimura, T.1    Asseldonk, E.J.2    Humphreys, B.D.3    Gunaratnam, L.4    Duffield, J.S.5    Bonventre, J.V.6
  • 10
    • 79551536740 scopus 로고    scopus 로고
    • Regression of microalbuminuria in type 1 diabetes is associated with lower levels of urinary tubular injury biomarkers, kidney injury molecule-1, and N-acetyl-b-Dglucosaminidase
    • Vaidya VS, Niewczas MA, Ficociello LH, Johnson AC, Collings FB, Warram JH, Krolewski AS, Bonventre JV: Regression of microalbuminuria in type 1 diabetes is associated with lower levels of urinary tubular injury biomarkers, kidney injury molecule-1, and N-acetyl-b-Dglucosaminidase. Kidney Int 79: 464-470, 2011
    • (2011) Kidney Int , vol.79 , pp. 464-470
    • Vaidya, V.S.1    Niewczas, M.A.2    Ficociello, L.H.3    Johnson, A.C.4    Collings, F.B.5    Warram, J.H.6    Krolewski, A.S.7    Bonventre, J.V.8
  • 11
    • 80955163621 scopus 로고    scopus 로고
    • Novel roles for TIM-1 in immunity and infection
    • Rennert PD: Novel roles for TIM-1 in immunity and infection. Immunol Lett 141: 28-35, 2011
    • (2011) Immunol Lett , vol.141 , pp. 28-35
    • Rennert, P.D.1
  • 12
    • 80053317125 scopus 로고    scopus 로고
    • The emerging role of the TIM molecules in transplantation
    • Yeung M, McGrath M, Najafian N: The emerging role of the TIM molecules in transplantation. Am J Transplant 11: 2012-2019, 2011
    • (2011) Am J Transplant , vol.11 , pp. 2012-2019
    • Yeung, M.1    McGrath, M.2    Najafian, N.3
  • 21
    • 77957243164 scopus 로고    scopus 로고
    • ChEA: Transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
    • Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A: ChEA: Transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics 26: 2438-2444, 2010
    • (2010) Bioinformatics , vol.26 , pp. 2438-2444
    • Lachmann, A.1    Xu, H.2    Krishnan, J.3    Berger, S.I.4    Mazloom, A.R.5    Ma'ayan, A.6
  • 22
    • 61449203001 scopus 로고    scopus 로고
    • KEA: Kinase enrichment analysis
    • Lachmann A, Ma'ayan A: KEA: Kinase enrichment analysis. Bioinformatics 25: 684-686, 2009
    • (2009) Bioinformatics , vol.25 , pp. 684-686
    • Lachmann, A.1    Ma'ayan, A.2
  • 23
    • 80053250848 scopus 로고    scopus 로고
    • Gene expression analysis reveals the cell cycle and kinetochore genes participating in ischemia reperfusion injury and early development in kidney
    • KimTM, Ramírez V, Barrera-Chimal J, BobadillaNA, Park PJ, Vaidya VS: Gene expression analysis reveals the cell cycle and kinetochore genes participating in ischemia reperfusion injury and early development in kidney. PLoS One 6: e25679, 2011
    • (2011) PLoS One , vol.6
    • Kim, T.M.1    Ramírez, V.2    Barrera-Chimal, J.3    Bobadilla, N.A.4    Park, P.J.5    Vaidya, V.S.6
  • 26
    • 33845898164 scopus 로고    scopus 로고
    • ECRbase: Database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes
    • Loots G, Ovcharenko I: ECRbase: Database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. Bioinformatics 23: 122-124, 2007
    • (2007) Bioinformatics , vol.23 , pp. 122-124
    • Loots, G.1    Ovcharenko, I.2
  • 27
    • 36349011849 scopus 로고    scopus 로고
    • Genes2Networks: Connecting lists of gene symbols using mammalian protein interactions databases
    • Berger SI, Posner JM,Ma'ayan A: Genes2Networks: Connecting lists of gene symbols using mammalian protein interactions databases. BMC Bioinformatics 8: 372, 2007
    • (2007) BMC Bioinformatics , vol.8 , pp. 372
    • Berger, S.I.1    Posner, J.M.2    Ma'ayan, A.3
  • 33
    • 84902275970 scopus 로고    scopus 로고
    • Changes in the incidence and outcome for early acute kidney injury in a cohort of Australian intensive care units
    • ANZICS Database Management Committee
    • Bagshaw SM, George C, Bellomo R; ANZICS Database Management Committee: Changes in the incidence and outcome for early acute kidney injury in a cohort of Australian intensive care units. Crit Care 11: R68, 2007
    • (2007) Crit Care , vol.11
    • Bagshaw, S.M.1    George, C.2    Bellomo, R.3
  • 35
    • 0001556829 scopus 로고    scopus 로고
    • Renal tubule regeneration after ischemic injury is coupled to the up-regulation and activation of cyclins and cyclin dependent kinases
    • Park SK, Kang MJ, Kim W, Koh GY: Renal tubule regeneration after ischemic injury is coupled to the up-regulation and activation of cyclins and cyclin dependent kinases. Kidney Int 52: 706-714, 1997
    • (1997) Kidney Int , vol.52 , pp. 706-714
    • Park, S.K.1    Kang, M.J.2    Kim, W.3    Koh, G.Y.4
  • 37
    • 44249118962 scopus 로고    scopus 로고
    • ATR-Chk2 signaling in p53 activation and DNA damage response during cisplatin-induced apoptosis
    • Pabla N, Huang S,Mi QS, Daniel R, Dong Z: ATR-Chk2 signaling in p53 activation and DNA damage response during cisplatin-induced apoptosis. J Biol Chem283: 6572-6583, 2008
    • (2008) J Biol Chem , vol.283 , pp. 6572-6583
    • Pabla, N.1    Huang, S.2    Mi, Q.S.3    Daniel, R.4    Dong, Z.5
  • 38
    • 77954733222 scopus 로고    scopus 로고
    • JAK/STAT signaling in renal diseases
    • Chuang PY, He JC: JAK/STAT signaling in renal diseases. Kidney Int 78: 231-234, 2010
    • (2010) Kidney Int , vol.78 , pp. 231-234
    • Chuang, P.Y.1    He, J.C.2
  • 39
    • 77951708252 scopus 로고    scopus 로고
    • Blockade of Janus kinase-2 signaling ameliorates mouse liver damage due to ischemia and reperfusion
    • Freitas MC, Uchida Y, Zhao D, Ke B, Busuttil RW, Kupiec-Weglinski JW: Blockade of Janus kinase-2 signaling ameliorates mouse liver damage due to ischemia and reperfusion. Liver Transpl 16: 600-610, 2010
    • (2010) Liver Transpl , vol.16 , pp. 600-610
    • Freitas, M.C.1    Uchida, Y.2    Zhao, D.3    Ke, B.4    Busuttil, R.W.5    Kupiec-Weglinski, J.W.6
  • 40
    • 77954730368 scopus 로고    scopus 로고
    • A novel STAT3 inhibitor, S3I-201, attenuates renal interstitial fibroblast activation and interstitial fibrosis in obstructive nephropathy
    • PangM, Ma L,Gong R, Tolbert E,Mao H, PonnusamyM, Chin YE, Yan H, Dworkin LD, Zhuang S: A novel STAT3 inhibitor, S3I-201, attenuates renal interstitial fibroblast activation and interstitial fibrosis in obstructive nephropathy. Kidney Int 78: 257-268, 2010
    • (2010) Kidney Int , vol.78 , pp. 257-268
    • Pang, M.1    Ma, L.2    Gong, R.3    Tolbert, E.4    Mao, H.5    Ponnusamy, M.6    Chin, Y.E.7    Yan, H.8    Dworkin, L.D.9    Zhuang, S.10
  • 42
    • 84874107696 scopus 로고    scopus 로고
    • Targeting DNA repair mechanisms in cancer
    • Furgason JM, Bahassi EM: Targeting DNA repair mechanisms in cancer. Pharmacol Ther 137: 298-308, 2013
    • (2013) Pharmacol Ther , vol.137 , pp. 298-308
    • Furgason, J.M.1    Bahassi, E.M.2
  • 43
    • 77952174830 scopus 로고    scopus 로고
    • Epithelial cell cycle arrest in G2/M mediates kidney fibrosis after injury
    • Yang L, Besschetnova TY, Brooks CR, Shah JV, Bonventre JV: Epithelial cell cycle arrest in G2/M mediates kidney fibrosis after injury. Nat Med 16: 535-543, 2010
    • (2010) Nat Med , vol.16 , pp. 535-543
    • Yang, L.1    Besschetnova, T.Y.2    Brooks, C.R.3    Shah, J.V.4    Bonventre, J.V.5
  • 46
    • 84859755474 scopus 로고    scopus 로고
    • Kim-1/Tim-1 and immune cells: Shifting sands
    • Ichimura T, Brooks CR, Bonventre JV: Kim-1/Tim-1 and immune cells: Shifting sands. Kidney Int 81: 809-811, 2012
    • (2012) Kidney Int , vol.81 , pp. 809-811
    • Ichimura, T.1    Brooks, C.R.2    Bonventre, J.V.3
  • 47
    • 0025087596 scopus 로고
    • Sensitive and rapid quantitation of oxygen reactive species formation in rat synaptosomes
    • Lebel CP, Bondy SC: Sensitive and rapid quantitation of oxygen reactive species formation in rat synaptosomes. Neurochem Int 17: 435-440, 1990
    • (1990) Neurochem Int , vol.17 , pp. 435-440
    • Lebel, C.P.1    Bondy, S.C.2
  • 48
    • 0034603580 scopus 로고    scopus 로고
    • Age-related changes in reactive oxygen species production in rat brain homogenates
    • Driver AS, Kodavanti PR, Mundy WR: Age-related changes in reactive oxygen species production in rat brain homogenates. Neurotoxicol Teratol 22: 175-181, 2000
    • (2000) Neurotoxicol Teratol , vol.22 , pp. 175-181
    • Driver, A.S.1    Kodavanti, P.R.2    Mundy, W.R.3
  • 49
    • 59249098061 scopus 로고    scopus 로고
    • Detection and measurement of reactive oxygen intermediates in mitochondria and cells
    • Whiteman M, Dogra Y, Winyard PG, Armstrong JS: Detection and measurement of reactive oxygen intermediates in mitochondria and cells. Methods Mol Biol 476: 29-50, 2008
    • (2008) Methods Mol Biol , vol.476 , pp. 29-50
    • Whiteman, M.1    Dogra, Y.2    Winyard, P.G.3    Armstrong, J.S.4
  • 50
    • 84866554081 scopus 로고    scopus 로고
    • Heterozygosity for fibrinogen results in efficient resolution of kidney ischemia reperfusion injury
    • Ajay AK, Saikumar J, Bijol V, Vaidya VS: Heterozygosity for fibrinogen results in efficient resolution of kidney ischemia reperfusion injury. PLoS One 7: e45628, 2012
    • (2012) PLoS One , vol.7
    • Ajay, A.K.1    Saikumar, J.2    Bijol, V.3    Vaidya, V.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.