-
1
-
-
54249092768
-
Dividing the workload at a eukaryotic replication fork
-
Kunkel, T.A. and Burgers, P.M. (2008) Dividing the workload at a eukaryotic replication fork. Trends Cell Biol., 18, 521-527.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 521-527
-
-
Kunkel, T.A.1
Burgers, P.M.2
-
2
-
-
75749086797
-
DNA polymerases at the eukaryotic fork-20 years later
-
Pavlov, Y.I. and Shcherbakova, P.V. (2010) DNA polymerases at the eukaryotic fork-20 years later. Mutat. Res., 685, 45-53.
-
(2010)
Mutat. Res
, vol.685
, pp. 45-53
-
-
Pavlov, Y.I.1
Shcherbakova, P.V.2
-
3
-
-
21244506437
-
Eukaryotic translesion synthesis DNA polymerases: Specificity of structure and function
-
Prakash, S., Johnson, R.E. and Prakash, L. (2005) Eukaryotic translesion synthesis DNA polymerases: Specificity of structure and function. Annu. Rev. Biochem., 74, 317-353.
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 317-353
-
-
Prakash, S.1
Johnson, R.E.2
Prakash, L.3
-
4
-
-
38049125552
-
The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases
-
McCulloch, S.D. and Kunkel, T.A. (2008) The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases. Cell Res., 18, 148-161.
-
(2008)
Cell Res
, vol.18
, pp. 148-161
-
-
McCulloch, S.D.1
Kunkel, T.A.2
-
5
-
-
63849131910
-
Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance
-
Waters, L.S., Minesinger, B.K., Wiltrout, M.E., D'Souza, S., Woodruff, R.V. and Walker, G.C. (2009) Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance. Microbiol. Mol. Biol. Rev., 73, 134-154.
-
(2009)
Microbiol. Mol. Biol. Rev
, vol.73
, pp. 134-154
-
-
Waters, L.S.1
Minesinger, B.K.2
Wiltrout, M.E.3
D'Souza, S.4
Woodruff, R.V.5
Walker, G.C.6
-
6
-
-
33748948387
-
A novel function of DNA polymerase z regulated by PCNA
-
Northam, M.R., Garg, P., Baitin, D.M., Burgers, P.M. and Shcherbakova, P.V. (2006) A novel function of DNA polymerase z regulated by PCNA. EMBO J., 25, 4316-4325.
-
(2006)
EMBO J.
, vol.25
, pp. 4316-4325
-
-
Northam, M.R.1
Garg, P.2
Baitin, D.M.3
Burgers, P.M.4
Shcherbakova, P.V.5
-
7
-
-
33748941448
-
The fidelity of DNA synthesis by yeast DNA polymerase z alone and with accessory proteins
-
Zhong, X., Garg, P., Stith, C.M., Nick McElhinny, S.A., Kissling, G.E., Burgers, P.M. and Kunkel, T.A. (2006) The fidelity of DNA synthesis by yeast DNA polymerase z alone and with accessory proteins. Nucleic Acids Res., 34, 4731-4742.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4731-4742
-
-
Zhong, X.1
Garg, P.2
Stith, C.M.3
Nick McElhinny, S.A.4
Kissling, G.E.5
Burgers, P.M.6
Kunkel, T.A.7
-
8
-
-
82555187816
-
The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites
-
Kim, N., Mudrak, S.V. and Jinks-Robertson, S. (2011) The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites. DNA Repair, 10, 1262-1271.
-
(2011)
DNA Repair
, vol.10
, pp. 1262-1271
-
-
Kim, N.1
Mudrak, S.V.2
Jinks-Robertson, S.3
-
9
-
-
25844466570
-
Roles of the polymerase and BRCT domains of Rev1 protein in translesion DNA synthesis in yeast in vivo
-
Otsuka, C., Kunitomi, N., Iwai, S., Loakes, D. and Negishi, K. (2005) Roles of the polymerase and BRCT domains of Rev1 protein in translesion DNA synthesis in yeast in vivo. Mutat. Res., 578, 79-87.
-
(2005)
Mutat. Res
, vol.578
, pp. 79-87
-
-
Otsuka, C.1
Kunitomi, N.2
Iwai, S.3
Loakes, D.4
Negishi, K.5
-
10
-
-
39549097102
-
Mutational specificity and genetic control of replicative bypass of an abasic site in yeast
-
Pages, V., Johnson, R.E., Prakash, L. and Prakash, S. (2008) Mutational specificity and genetic control of replicative bypass of an abasic site in yeast. Proc. Natl Acad. Sci. USA, 105, 1170-1175.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 1170-1175
-
-
Pages, V.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
-
11
-
-
78951481539
-
The DNA polymerase activity of Saccharomyces cerevisiae Rev1 is biologically significant
-
Wiltrout, M.E. and Walker, G.C. (2011) The DNA polymerase activity of Saccharomyces cerevisiae Rev1 is biologically significant. Genetics, 187, 21-35.
-
(2011)
Genetics
, vol.187
, pp. 21-35
-
-
Wiltrout, M.E.1
Walker, G.C.2
-
12
-
-
77956102849
-
The catalytic function of the Rev1 dCMP transferase is required in a lesionspecific manner for translesion synthesis and base damage-induced mutagenesis
-
Zhou, Y., Wang, J., Zhang, Y. and Wang, Z. (2010) The catalytic function of the Rev1 dCMP transferase is required in a lesionspecific manner for translesion synthesis and base damage-induced mutagenesis. Nucleic Acids Res., 38, 5036-5046.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5036-5046
-
-
Zhou, Y.1
Wang, J.2
Zhang, Y.3
Wang, Z.4
-
13
-
-
33845223494
-
Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage
-
Guo, C., Tang, T.S., Bienko, M., Parker, J.L., Bielen, A.B., Sonoda, E., Takeda, S., Ulrich, H.D., Dikic, I. and Friedberg, E.C. (2006) Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage. Mol. Cell. Biol., 26, 8892-8900.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 8892-8900
-
-
Guo, C.1
Tang, T.S.2
Bienko, M.3
Parker, J.L.4
Bielen, A.B.5
Sonoda, E.6
Takeda, S.7
Ulrich, H.D.8
Dikic, I.9
Friedberg, E.C.10
-
14
-
-
34547117417
-
A ubiquitin-binding motif in the translesion DNA polymerase Rev1 mediates its essential functional interaction with ubiquitinated proliferating cell nuclear antigen in response to DNA damage
-
Wood, A., Garg, P. and Burgers, P.M. (2007) A ubiquitin-binding motif in the translesion DNA polymerase Rev1 mediates its essential functional interaction with ubiquitinated proliferating cell nuclear antigen in response to DNA damage. J. Biol. Chem., 282, 20256-20263.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 20256-20263
-
-
Wood, A.1
Garg, P.2
Burgers, P.M.3
-
15
-
-
33845427432
-
Complex formation with Rev1 enhances the proficiency of Saccharomyces cerevisiae DNA polymerase z for mismatch extension and for extension opposite from DNA lesions
-
Acharya, N., Johnson, R.E., Prakash, S. and Prakash, L. (2006) Complex formation with Rev1 enhances the proficiency of Saccharomyces cerevisiae DNA polymerase z for mismatch extension and for extension opposite from DNA lesions. Mol. Cell. Biol., 26, 9555-9563.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 9555-9563
-
-
Acharya, N.1
Johnson, R.E.2
Prakash, S.3
Prakash, L.4
-
16
-
-
0037150492
-
Cellular roles of DNA polymerase z and Rev1 protein
-
Lawrence, C.W. (2002) Cellular roles of DNA polymerase z and Rev1 protein. DNA Repair, 1, 425-435.
-
(2002)
DNA Repair
, vol.1
, pp. 425-435
-
-
Lawrence, C.W.1
-
17
-
-
0029065571
-
Association of increased spontaneous mutation rates with high levels of transcription in yeast
-
Datta, A. and Jinks-Robertson, S. (1995) Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science, 268, 1616-1619.
-
(1995)
Science
, vol.268
, pp. 1616-1619
-
-
Datta, A.1
Jinks-Robertson, S.2
-
18
-
-
0030700468
-
A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae
-
Holbeck, S.L. and Strathern, J.N. (1997) A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae. Genetics, 147, 1017-1024.
-
(1997)
Genetics
, vol.147
, pp. 1017-1024
-
-
Holbeck, S.L.1
Strathern, J.N.2
-
19
-
-
0037224965
-
Checkpoint activation regulates mutagenic translesion synthesis
-
Kai, M. and Wang, T.S. (2003) Checkpoint activation regulates mutagenic translesion synthesis. Genes Dev., 17, 64-76.
-
(2003)
Genes Dev
, vol.17
, pp. 64-76
-
-
Kai, M.1
Wang, T.S.2
-
20
-
-
0034805293
-
In vivo consequences of putative active site mutations in yeast DNA polymerases a, e, d and z
-
Pavlov, Y.I., Shcherbakova, P.V. and Kunkel, T.A. (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases a, e, d and z. Genetics, 159, 47-64.
-
(2001)
Genetics
, vol.159
, pp. 47-64
-
-
Pavlov, Y.I.1
Shcherbakova, P.V.2
Kunkel, T.A.3
-
21
-
-
0029908575
-
Base analog 6-N-hydroxylaminopurine mutagenesis in the yeast S cerevisiae is controlled by replicative DNA polymerases
-
Shcherbakova, P.V., Noskov, V.N., Pshenichnov, M.R. and Pavlov, Y.I. (1996) Base analog 6-N-hydroxylaminopurine mutagenesis in the yeast S. cerevisiae is controlled by replicative DNA polymerases. Mutat. Res., 369, 33-44.
-
(1996)
Mutat. Res
, vol.369
, pp. 33-44
-
-
Shcherbakova, P.V.1
Noskov, V.N.2
Pshenichnov, M.R.3
Pavlov, Y.I.4
-
22
-
-
74249092035
-
Participation of DNA polymerase z in replication of undamaged DNA in Saccharomyces cerevisiae
-
Northam, M.R., Robinson, H.A., Kochenova, O.V. and Shcherbakova, P.V. (2010) Participation of DNA polymerase z in replication of undamaged DNA in Saccharomyces cerevisiae. Genetics, 184, 27-42.
-
(2010)
Genetics
, vol.184
, pp. 27-42
-
-
Northam, M.R.1
Robinson, H.A.2
Kochenova, O.V.3
Shcherbakova, P.V.4
-
23
-
-
34250878426
-
Expandable DNA repeats and human disease
-
Mirkin, S.M. (2007) Expandable DNA repeats and human disease. Nature, 447, 932-940.
-
(2007)
Nature
, vol.447
, pp. 932-940
-
-
Mirkin, S.M.1
-
24
-
-
76249098186
-
R loops stimulate genetic instability of CTG.CAG repeats
-
Lin, Y., Dent, S.Y., Wilson, J.H., Wells, R.D. and Napierala, M. (2009) R loops stimulate genetic instability of CTG.CAG repeats. Proc. Natl Acad. Sci. USA, 107, 692-697.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 692-697
-
-
Lin, Y.1
Dent, S.Y.2
Wilson, J.H.3
Wells, R.D.4
Napierala, M.5
-
25
-
-
65249130164
-
Models for chromosomal replication-independent non-B DNA structure-induced genetic instability
-
Wang, G. and Vasquez, K.M. (2009) Models for chromosomal replication-independent non-B DNA structure-induced genetic instability. Mol. Carcinog., 48, 286-298.
-
(2009)
Mol. Carcinog
, vol.48
, pp. 286-298
-
-
Wang, G.1
Vasquez, K.M.2
-
26
-
-
0035844242
-
Interactions between the Werner syndrome helicase and DNA polymerase d specifically facilitate copying of tetraplex and hairpin structures of the d(CGG)n trinucleotide repeat sequence
-
Kamath-Loeb, A.S., Loeb, L.A., Johansson, E., Burgers, P.M. and Fry, M. (2001) Interactions between the Werner syndrome helicase and DNA polymerase d specifically facilitate copying of tetraplex and hairpin structures of the d(CGG)n trinucleotide repeat sequence. J. Biol. Chem., 276, 16439-16446.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 16439-16446
-
-
Kamath-Loeb, A.S.1
Loeb, L.A.2
Johansson, E.3
Burgers, P.M.4
Fry, M.5
-
27
-
-
0024391833
-
Slow replication of palindrome-containing DNA
-
Lindsey, J.C. and Leach, D.R. (1989) Slow replication of palindrome-containing DNA. J. Mol. Biol., 206, 779-782.
-
(1989)
J. Mol. Biol
, vol.206
, pp. 779-782
-
-
Lindsey, J.C.1
Leach, D.R.2
-
28
-
-
0037315530
-
Replication and expansion of trinucleotide repeats in yeast
-
Pelletier, R., Krasilnikova, M.M., Samadashwily, G.M., Lahue, R. and Mirkin, S.M. (2003) Replication and expansion of trinucleotide repeats in yeast. Mol. Cell. Biol., 23, 1349-1357.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 1349-1357
-
-
Pelletier, R.1
Krasilnikova, M.M.2
Samadashwily, G.M.3
Lahue, R.4
Mirkin, S.M.5
-
29
-
-
0030725454
-
Trinucleotide repeats affect DNA replication in vivo
-
Samadashwily, G.M., Raca, G. and Mirkin, S.M. (1997) Trinucleotide repeats affect DNA replication in vivo. Nat. Genet., 17, 298-304.
-
(1997)
Nat. Genet
, vol.17
, pp. 298-304
-
-
Samadashwily, G.M.1
Raca, G.2
Mirkin, S.M.3
-
30
-
-
48249141027
-
Replication stalling at unstable inverted repeats: Interplay between DNA hairpins and fork stabilizing proteins
-
Voineagu, I., Narayanan, V., Lobachev, K.S. and Mirkin, S.M. (2008) Replication stalling at unstable inverted repeats: Interplay between DNA hairpins and fork stabilizing proteins. Proc. Natl Acad. Sci. USA, 105, 9936-9941.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 9936-9941
-
-
Voineagu, I.1
Narayanan, V.2
Lobachev, K.S.3
Mirkin, S.M.4
-
31
-
-
0024458717
-
Sequence-specific pausing during in vitro DNA replication on double-stranded DNA templates
-
Bedinger, P., Munn, M. and Alberts, B.M. (1989) Sequence-specific pausing during in vitro DNA replication on double-stranded DNA templates. J. Biol. Chem., 264, 16880-16886.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 16880-16886
-
-
Bedinger, P.1
Munn, M.2
Alberts, B.M.3
-
32
-
-
0018728272
-
The effect of template secondary structure on vaccinia DNA polymerase
-
Challberg, M.D. and Englund, P.T. (1979) The effect of template secondary structure on vaccinia DNA polymerase. J. Biol. Chem., 254, 7820-7826.
-
(1979)
J. Biol. Chem
, vol.254
, pp. 7820-7826
-
-
Challberg, M.D.1
Englund, P.T.2
-
33
-
-
0019325041
-
Pauses at positions of secondary structure during in vitro replication of single-stranded fd bacteriophage DNA by T4 DNA polymerase
-
Huang, C.C. and Hearst, J.E. (1980) Pauses at positions of secondary structure during in vitro replication of single-stranded fd bacteriophage DNA by T4 DNA polymerase. Anal. Biochem., 103, 127-139.
-
(1980)
Anal. Biochem
, vol.103
, pp. 127-139
-
-
Huang, C.C.1
Hearst, J.E.2
-
34
-
-
0020060293
-
Template-directed pausing in in vitro DNA synthesis by DNA polymerase a from Drosophila melanogaster embryos
-
Kaguni, L.S. and Clayton, D.A. (1982) Template-directed pausing in in vitro DNA synthesis by DNA polymerase a from Drosophila melanogaster embryos. Proc. Natl Acad. Sci. USA, 79, 983-987.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 983-987
-
-
Kaguni, L.S.1
Clayton, D.A.2
-
35
-
-
0020490330
-
Specific sequences in native DNA that arrest synthesis by DNA polymerase a
-
Weaver, D.T. and DePamphilis, M.L. (1982) Specific sequences in native DNA that arrest synthesis by DNA polymerase a. J. Biol. Chem., 257, 2075-2086.
-
(1982)
J. Biol. Chem
, vol.257
, pp. 2075-2086
-
-
Weaver, D.T.1
DePamphilis, M.L.2
-
36
-
-
0030837535
-
Palindrome resolution and recombination in the mammalian germ line
-
Akgun, E., Zahn, J., Baumes, S., Brown, G., Liang, F., Romanienko, P.J., Lewis, S. and Jasin, M. (1997) Palindrome resolution and recombination in the mammalian germ line. Mol. Cell. Biol., 17, 5559-5570.
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 5559-5570
-
-
Akgun, E.1
Zahn, J.2
Baumes, S.3
Brown, G.4
Liang, F.5
Romanienko, P.J.6
Lewis, S.7
Jasin, M.8
-
37
-
-
0019829267
-
Instability of palindromic DNA in Escherichia coli
-
Pt1
-
Collins, J. (1981) Instability of palindromic DNA in Escherichia coli. Cold Spring Harb. Symp. Quant. Biol., 45(Pt 1), 409-416.
-
(1981)
Cold Spring Harb. Symp. Quant. Biol
, vol.45
, pp. 409-416
-
-
Collins, J.1
-
38
-
-
0020455123
-
Precise and nearlyprecise excision of the symmetrical inverted repeats of Tn5; common features of recA-independent deletion events in Escherichia coli
-
Collins, J., Volckaert, G. and Nevers, P. (1982) Precise and nearlyprecise excision of the symmetrical inverted repeats of Tn5; common features of recA-independent deletion events in Escherichia coli. Gene, 19, 139-146.
-
(1982)
Gene
, vol.19
, pp. 139-146
-
-
Collins, J.1
Volckaert, G.2
Nevers, P.3
-
39
-
-
33747874030
-
Palindrome-mediated chromosomal translocations in humans
-
Kurahashi, H., Inagaki, H., Ohye, T., Kogo, H., Kato, T. and Emanuel, B.S. (2006) Palindrome-mediated chromosomal translocations in humans. DNA Repair, 5, 1136-1145.
-
(2006)
DNA Repair
, vol.5
, pp. 1136-1145
-
-
Kurahashi, H.1
Inagaki, H.2
Ohye, T.3
Kogo, H.4
Kato, T.5
Emanuel, B.S.6
-
40
-
-
14844286404
-
Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites
-
Lemoine, F.J., Degtyareva, N.P., Lobachev, K. and Petes, T.D. (2005) Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites. Cell, 120, 587-598.
-
(2005)
Cell
, vol.120
, pp. 587-598
-
-
Lemoine, F.J.1
Degtyareva, N.P.2
Lobachev, K.3
Petes, T.D.4
-
41
-
-
0037169325
-
The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements
-
Lobachev, K.S., Gordenin, D.A. and Resnick, M.A. (2002) The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements. Cell, 108, 183-193.
-
(2002)
Cell
, vol.108
, pp. 183-193
-
-
Lobachev, K.S.1
Gordenin, D.A.2
Resnick, M.A.3
-
42
-
-
0030794661
-
A 140-bp-long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae
-
Nag, D.K. and Kurst, A. (1997) A 140-bp-long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae. Genetics, 146, 835-847.
-
(1997)
Genetics
, vol.146
, pp. 835-847
-
-
Nag, D.K.1
Kurst, A.2
-
43
-
-
6944230944
-
Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae
-
Nag, D.K., Suri, M. and Stenson, E.K. (2004) Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae. Nucleic Acids Res., 32, 5677-5684.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5677-5684
-
-
Nag, D.K.1
Suri, M.2
Stenson, E.K.3
-
44
-
-
33745264366
-
The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks
-
Narayanan, V., Mieczkowski, P.A., Kim, H.M., Petes, T.D. and Lobachev, K.S. (2006) The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks. Cell, 125, 1283-1296.
-
(2006)
Cell
, vol.125
, pp. 1283-1296
-
-
Narayanan, V.1
Mieczkowski, P.A.2
Kim, H.M.3
Petes, T.D.4
Lobachev, K.S.5
-
45
-
-
0034107667
-
Long palindromic sequences induce double-strand breaks during meiosis in yeast
-
Nasar, F., Jankowski, C. and Nag, D.K. (2000) Long palindromic sequences induce double-strand breaks during meiosis in yeast. Mol. Cell. Biol., 20, 3449-3458.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 3449-3458
-
-
Nasar, F.1
Jankowski, C.2
Nag, D.K.3
-
46
-
-
0025630591
-
Frameshift mutation: Determinants of specificity
-
Ripley, L.S. (1990) Frameshift mutation: Determinants of specificity. Annu. Rev. Genet., 24, 189-213.
-
(1990)
Annu. Rev. Genet
, vol.24
, pp. 189-213
-
-
Ripley, L.S.1
-
47
-
-
0032484153
-
Primer-Template misalignments during leading strand DNA synthesis account for the most frequent spontaneous mutations in a quasipalindromic region in Escherichia coli
-
Rosche, W.A., Ripley, L.S. and Sinden, R.R. (1998) Primer-Template misalignments during leading strand DNA synthesis account for the most frequent spontaneous mutations in a quasipalindromic region in Escherichia coli. J. Mol. Biol., 284, 633-646.
-
(1998)
J. Mol. Biol
, vol.284
, pp. 633-646
-
-
Rosche, W.A.1
Ripley, L.S.2
Sinden, R.R.3
-
48
-
-
0026352538
-
On the deletion of inverted repeated DNA in Escherichia coli: Effects of length, thermal stability, and cruciform formation in vivo
-
Sinden, R.R., Zheng, G.X., Brankamp, R.G. and Allen, K.N. (1991) On the deletion of inverted repeated DNA in Escherichia coli: Effects of length, thermal stability, and cruciform formation in vivo. Genetics, 129, 991-1005.
-
(1991)
Genetics
, vol.129
, pp. 991-1005
-
-
Sinden, R.R.1
Zheng, G.X.2
Brankamp, R.G.3
Allen, K.N.4
-
49
-
-
34547205070
-
An AT-rich sequence in human common fragile site FRA16D causes fork stalling and chromosome breakage in S cerevisiae
-
Zhang, H. and Freudenreich, C.H. (2007) An AT-rich sequence in human common fragile site FRA16D causes fork stalling and chromosome breakage in S. cerevisiae. Mol. Cell, 27, 367-379.
-
(2007)
Mol. Cell
, vol.27
, pp. 367-379
-
-
Zhang, H.1
Freudenreich, C.H.2
-
50
-
-
80052971350
-
On the sequence-directed nature of human gene mutation: The role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease
-
Cooper, D.N., Bacolla, A., Ferec, C., Vasquez, K.M., Kehrer- Sawatzki, H. and Chen, J.M. (2011) On the sequence-directed nature of human gene mutation: The role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease. Hum. Mutat., 32, 1075-1099.
-
(2011)
Hum. Mutat
, vol.32
, pp. 1075-1099
-
-
Cooper, D.N.1
Bacolla, A.2
Ferec, C.3
Vasquez, K.M.4
Kehrer- Sawatzki, H.5
Chen, J.M.6
-
51
-
-
34249907843
-
Non-B DNA conformations mutagenesis and disease
-
Wells, R.D. (2007) Non-B DNA conformations, mutagenesis and disease. Trends Biochem. Sci., 32, 271-278.
-
(2007)
Trends Biochem. Sci
, vol.32
, pp. 271-278
-
-
Wells, R.D.1
-
52
-
-
0031556020
-
Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism
-
Rosche, W.A., Trinh, T.Q. and Sinden, R.R. (1997) Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism. J. Mol. Biol., 269, 176-187.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 176-187
-
-
Rosche, W.A.1
Trinh, T.Q.2
Sinden, R.R.3
-
53
-
-
79958204048
-
Insights into mutagenesis using Escherichia coli chromosomal lacZ strains that enable detection of a wide spectrum of mutational events
-
Seier, T., Padgett, D.R., Zilberberg, G., Sutera, V.A. Jr, Toha, N. and Lovett, S.T. (2011) Insights into mutagenesis using Escherichia coli chromosomal lacZ strains that enable detection of a wide spectrum of mutational events. Genetics, 188, 247-262.
-
(2011)
Genetics
, vol.188
, pp. 247-262
-
-
Seier, T.1
Padgett, D.R.2
Zilberberg, G.3
Sutera Jr., V.A.4
Toha, N.5
Lovett, S.T.6
-
54
-
-
30744477691
-
Cis and trans-Acting effects on a mutational hotspot involving a replication template switch
-
Dutra, B.E. and Lovett, S.T. (2006) Cis and trans-Acting effects on a mutational hotspot involving a replication template switch. J. Mol. Biol., 356, 300-311.
-
(2006)
J. Mol. Biol
, vol.356
, pp. 300-311
-
-
Dutra, B.E.1
Lovett, S.T.2
-
55
-
-
0034703487
-
A novel mutational hotspot in a natural quasipalindrome in Escherichia coli
-
Viswanathan, M., Lacirignola, J.J., Hurley, R.L. and Lovett, S.T. (2000) A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. J. Mol. Biol., 302, 553-564.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 553-564
-
-
Viswanathan, M.1
Lacirignola, J.J.2
Hurley, R.L.3
Lovett, S.T.4
-
56
-
-
0036948404
-
Origins of spontaneous mutations: Specificity and directionality of base-substitution frameshift, and sequencesubstitution mutageneses
-
Maki, H. (2002) Origins of spontaneous mutations: Specificity and directionality of base-substitution, frameshift, and sequencesubstitution mutageneses. Annu. Rev. Genet., 36, 279-303.
-
(2002)
Annu. Rev. Genet
, vol.36
, pp. 279-303
-
-
Maki, H.1
-
57
-
-
0034503096
-
DNA polymerase z introduces multiple mutations when bypassing spontaneous DNA damage in Saccharomyces cerevisiae
-
Harfe, B.D. and Jinks-Robertson, S. (2000) DNA polymerase z introduces multiple mutations when bypassing spontaneous DNA damage in Saccharomyces cerevisiae. Mol. Cell, 6, 1491-1499.
-
(2000)
Mol. Cell
, vol.6
, pp. 1491-1499
-
-
Harfe, B.D.1
Jinks-Robertson, S.2
-
58
-
-
0032915375
-
Mutator phenotypes conferred by MLH1 overexpression and by heterozygosity for mlh1 mutations
-
Shcherbakova, P.V. and Kunkel, T.A. (1999) Mutator phenotypes conferred by MLH1 overexpression and by heterozygosity for mlh1 mutations. Mol. Cell. Biol., 19, 3177-3183.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 3177-3183
-
-
Shcherbakova, P.V.1
Kunkel, T.A.2
-
59
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski, R.S. and Hieter, P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics, 122, 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
60
-
-
0024526246
-
The REV1 gene of Saccharomyces cerevisiae: Isolation, sequence, and functional analysis
-
Larimer, F.W., Perry, J.R. and Hardigree, A.A. (1989) The REV1 gene of Saccharomyces cerevisiae: Isolation, sequence, and functional analysis. J. Bacteriol., 171, 230-237.
-
(1989)
J. Bacteriol
, vol.171
, pp. 230-237
-
-
Larimer, F.W.1
Perry, J.R.2
Hardigree, A.A.3
-
62
-
-
76349101664
-
A cancerassociated DNA polymerase d variant modeled in yeast causes a catastrophic increase in genomic instability
-
Daee, D.L., Mertz, T.M. and Shcherbakova, P.V. (2010) A cancerassociated DNA polymerase d variant modeled in yeast causes a catastrophic increase in genomic instability. Proc. Natl Acad. Sci. USA, 107, 157-162.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 157-162
-
-
Daee, D.L.1
Mertz, T.M.2
Shcherbakova, P.V.3
-
63
-
-
21244448890
-
Proliferating cell nuclear antigen promotes translesion synthesis by DNA polymerase z
-
Garg, P., Stith, C.M., Majka, J. and Burgers, P.M. (2005) Proliferating cell nuclear antigen promotes translesion synthesis by DNA polymerase z. J. Biol. Chem., 280, 23446-23450.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 23446-23450
-
-
Garg, P.1
Stith, C.M.2
Majka, J.3
Burgers, P.M.4
-
64
-
-
80053044268
-
The non-canonical protein binding site at the monomer-monomer interface of yeast proliferating cell nuclear antigen (PCNA) regulates the Rev1-PCNA interaction and Pol z/Rev1- dependent translesion DNA synthesis
-
Sharma, N.M., Kochenova, O.V. and Shcherbakova, P.V. (2011) The non-canonical protein binding site at the monomer-monomer interface of yeast proliferating cell nuclear antigen (PCNA) regulates the Rev1-PCNA interaction and Pol z/Rev1- dependent translesion DNA synthesis. J. Biol. Chem., 286, 33557-33566.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 33557-33566
-
-
Sharma, N.M.1
Kochenova, O.V.2
Shcherbakova, P.V.3
-
65
-
-
0031012651
-
Overproduction and affinity purification of Saccharomyces cerevisiae replication factor C
-
Gerik, K.J., Gary, S.L. and Burgers, P.M. (1997) Overproduction and affinity purification of Saccharomyces cerevisiae replication factor C. J. Biol. Chem., 272, 1256-1262.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 1256-1262
-
-
Gerik, K.J.1
Gary, S.L.2
Burgers, P.M.3
-
66
-
-
0028245269
-
Recombinant replication protein A: Expression complex formation, and functional characterization
-
Henricksen, L.A., Umbricht, C.B. and Wold, M.S. (1994) Recombinant replication protein A: Expression, complex formation, and functional characterization. J. Biol. Chem., 269, 11121-11132.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 11121-11132
-
-
Henricksen, L.A.1
Umbricht, C.B.2
Wold, M.S.3
-
67
-
-
0028857175
-
Analyzing fidelity of DNA polymerases
-
Bebenek, K. and Kunkel, T.A. (1995) Analyzing fidelity of DNA polymerases. Methods Enzymol., 262, 217-232.
-
(1995)
Methods Enzymol
, vol.262
, pp. 217-232
-
-
Bebenek, K.1
Kunkel, T.A.2
-
68
-
-
0029849369
-
Modified crush-And-soak method for recovering oligodeoxynucleotides from polyacrylamide gel
-
Chen, Z. and Ruffner, D.E. (1996) Modified crush-And-soak method for recovering oligodeoxynucleotides from polyacrylamide gel. Biotechniques, 21, 820-822.
-
(1996)
Biotechniques
, vol.21
, pp. 820-822
-
-
Chen, Z.1
Ruffner, D.E.2
-
69
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
70
-
-
84891791455
-
Role of DNA polymerases in repeat-mediated genome instability
-
Shah, K.A., Shishkin, A.A., Voineagu, I., Pavlov, Y.I., Shcherbakova, P.V. and Mirkin, S.M. (2012) Role of DNA polymerases in repeat-mediated genome instability. Cell Rep., 2012, 342-347.
-
(2012)
Cell Rep
, vol.2012
, pp. 342-347
-
-
Shah, K.A.1
Shishkin, A.A.2
Voineagu, I.3
Pavlov, Y.I.4
Shcherbakova, P.V.5
Mirkin, S.M.6
-
71
-
-
0033859845
-
Evidence for a second function for Saccharomyces cerevisiae Rev1p
-
Nelson, J.R., Gibbs, P.E., Nowicka, A.M., Hinkle, D.C. and Lawrence, C.W. (2000) Evidence for a second function for Saccharomyces cerevisiae Rev1p. Mol. Microbiol., 37, 549-554.
-
(2000)
Mol. Microbiol
, vol.37
, pp. 549-554
-
-
Nelson, J.R.1
Gibbs, P.E.2
Nowicka, A.M.3
Hinkle, D.C.4
Lawrence, C.W.5
-
72
-
-
80052702417
-
Timing and spacing of ubiquitin-dependent DNA damage bypass
-
Ulrich, H.D. (2011) Timing and spacing of ubiquitin-dependent DNA damage bypass. FEBS Lett., 585, 2861-2867.
-
(2011)
FEBS Lett
, vol.585
, pp. 2861-2867
-
-
Ulrich, H.D.1
-
73
-
-
0032510731
-
MMS2, encoding a ubiquitin-conjugating-enzyme-like protein, is a member of the yeast error-free postreplication repair pathway
-
Broomfield, S., Chow, B.L. and Xiao, W. (1998) MMS2, encoding a ubiquitin-conjugating-enzyme-like protein, is a member of the yeast error-free postreplication repair pathway. Proc. Natl Acad. Sci. USA, 95, 5678-5683.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5678-5683
-
-
Broomfield, S.1
Chow, B.L.2
Xiao, W.3
-
74
-
-
0030992160
-
Supercoil-induced extrusion of a regulatory DNA hairpin
-
Dai, X., Greizerstein, M.B., Nadas-Chinni, K. and Rothman-Denes, L.B. (1997) Supercoil-induced extrusion of a regulatory DNA hairpin. Proc. Natl Acad. Sci. USA, 94, 2174-2179.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 2174-2179
-
-
Dai, X.1
Greizerstein, M.B.2
Nadas-Chinni, K.3
Rothman-Denes, L.B.4
-
75
-
-
0028247062
-
Most compact hairpin-Turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: An extraordinarily stable structure resistant to nucleases and heat
-
Hirao, I., Kawai, G., Yoshizawa, S., Nishimura, Y., Ishido, Y., Watanabe, K. and Miura, K. (1994) Most compact hairpin-Turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: An extraordinarily stable structure resistant to nucleases and heat. Nucleic Acids Res., 22, 576-582.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 576-582
-
-
Hirao, I.1
Kawai, G.2
Yoshizawa, S.3
Nishimura, Y.4
Ishido, Y.5
Watanabe, K.6
Miura, K.7
-
76
-
-
0036755397
-
Refinement of d(GCGAAGC) hairpin structure using one- And two-bond residual dipolar couplings
-
Padrta, P., Stefl, R., Kralik, L., Zidek, L. and Sklenar, V. (2002) Refinement of d(GCGAAGC) hairpin structure using one- And two-bond residual dipolar couplings. J. Biomol. NMR, 24, 1-14.
-
(2002)
J. Biomol. NMR
, vol.24
, pp. 1-14
-
-
Padrta, P.1
Stefl, R.2
Kralik, L.3
Zidek, L.4
Sklenar, V.5
-
77
-
-
0028309010
-
Nuclease resistance of an extraordinarily thermostable mini-hairpin DNA fragment, d(GCGAAGC) and its application to in vitro protein synthesis
-
Yoshizawa, S., Ueda, T., Ishido, Y., Miura, K., Watanabe, K. and Hirao, I. (1994) Nuclease resistance of an extraordinarily thermostable mini-hairpin DNA fragment, d(GCGAAGC) and its application to in vitro protein synthesis. Nucleic Acids Res., 22, 2217-2221.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2217-2221
-
-
Yoshizawa, S.1
Ueda, T.2
Ishido, Y.3
Miura, K.4
Watanabe, K.5
Hirao, I.6
-
78
-
-
0037068455
-
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
-
Hoege, C., Pfander, B., Moldovan, G.L., Pyrowolakis, G. and Jentsch, S. (2002) RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature, 419, 135-141.
-
(2002)
Nature
, vol.419
, pp. 135-141
-
-
Hoege, C.1
Pfander, B.2
Moldovan, G.L.3
Pyrowolakis, G.4
Jentsch, S.5
-
79
-
-
0141831006
-
Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation
-
Stelter, P. and Ulrich, H.D. (2003) Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation. Nature, 425, 188-191.
-
(2003)
Nature
, vol.425
, pp. 188-191
-
-
Stelter, P.1
Ulrich, H.D.2
-
80
-
-
0029087573
-
Replication slippage between distant short repeats in Saccharomyces cerevisiae depends on the direction of replication and the RAD50 and RAD52 genes
-
Tran, H.T., Degtyareva, N.P., Koloteva, N.N., Sugino, A., Masumoto, H., Gordenin, D.A. and Resnick, M.A. (1995) Replication slippage between distant short repeats in Saccharomyces cerevisiae depends on the direction of replication and the RAD50 and RAD52 genes. Mol. Cell. Biol., 15, 5607-5617.
-
(1995)
Mol. Cell. Biol
, vol.15
, pp. 5607-5617
-
-
Tran, H.T.1
Degtyareva, N.P.2
Koloteva, N.N.3
Sugino, A.4
Masumoto, H.5
Gordenin, D.A.6
Resnick, M.A.7
-
81
-
-
0027327670
-
The mutator mut7-1 of Saccharomyces cerevisiae
-
von Borstel, R.C., Ord, R.W., Stewart, S.P., Ritzel, R.G., Lee, G.S., Hennig, U.G. and Savage, E.A. (1993) The mutator mut7-1 of Saccharomyces cerevisiae. Mutat. Res., 289, 97-106.
-
(1993)
Mutat. Res
, vol.289
, pp. 97-106
-
-
Von Borstel, R.C.1
Ord, R.W.2
Stewart, S.P.3
Ritzel, R.G.4
Lee, G.S.5
Hennig, U.G.6
Savage, E.A.7
-
82
-
-
41849112068
-
The effect of sequence context on spontaneous Pol z-dependent mutagenesis in Saccharomyces cerevisiae
-
Abdulovic, A.L., Minesinger, B.K. and Jinks-Robertson, S. (2008) The effect of sequence context on spontaneous Pol z-dependent mutagenesis in Saccharomyces cerevisiae. Nucleic Acids Res., 36, 2082-2093.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2082-2093
-
-
Abdulovic, A.L.1
Minesinger, B.K.2
Jinks-Robertson, S.3
-
83
-
-
30444449018
-
The effect of oxidative metabolism on spontaneous Pol z-dependent translesion synthesis in Saccharomyces cerevisiae
-
Minesinger, B.K., Abdulovic, A.L., Ou, T.M. and Jinks-Robertson, S. (2006) The effect of oxidative metabolism on spontaneous Pol z-dependent translesion synthesis in Saccharomyces cerevisiae. DNA Repair, 5, 226-234.
-
(2006)
DNA Repair
, vol.5
, pp. 226-234
-
-
Minesinger, B.K.1
Abdulovic, A.L.2
Ou, T.M.3
Jinks-Robertson, S.4
-
84
-
-
0019996140
-
Model for the participation of quasipalindromic DNA sequences in frameshift mutation
-
Ripley, L.S. (1982) Model for the participation of quasipalindromic DNA sequences in frameshift mutation. Proc. Natl Acad. Sci. USA, 79, 4128-4132.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 4128-4132
-
-
Ripley, L.S.1
-
85
-
-
65249165610
-
Role of TLS DNA polymerases Z and k in processing naturally occurring structured DNA in human cells
-
Betous, R., Rey, L., Wang, G., Pillaire, M.J., Puget, N., Selves, J., Biard, D.S., Shin-ya, K., Vasquez, K.M., Cazaux, C. et al. (2009) Role of TLS DNA polymerases Z and k in processing naturally occurring structured DNA in human cells. Mol. Carcinog., 48, 369-378.
-
(2009)
Mol. Carcinog
, vol.48
, pp. 369-378
-
-
Betous, R.1
Rey, L.2
Wang, G.3
Pillaire, M.J.4
Puget, N.5
Selves, J.6
Biard, D.S.7
Shin-ya, K.8
Vasquez, K.M.9
Cazaux, C.10
-
86
-
-
67649198018
-
Human DNA polymerase Z is required for common fragile site stability during unperturbed DNA replication
-
Rey, L., Sidorova, J.M., Puget, N., Boudsocq, F., Biard, D.S., Monnat, R.J. Jr, Cazaux, C. and Hoffmann, J.S. (2009) Human DNA polymerase Z is required for common fragile site stability during unperturbed DNA replication. Mol. Cell. Biol., 29, 3344-3354.
-
(2009)
Mol. Cell. Biol
, vol.29
, pp. 3344-3354
-
-
Rey, L.1
Sidorova, J.M.2
Puget, N.3
Boudsocq, F.4
Biard, D.S.5
Monnat Jr., R.J.6
Cazaux, C.7
Hoffmann, J.S.8
-
87
-
-
78649980436
-
Epigenetic instability due to defective replication of structured DNA
-
Sarkies, P., Reams, C., Simpson, L.J. and Sale, J.E. (2012) Epigenetic instability due to defective replication of structured DNA. Mol. Cell, 40, 703-713.
-
(2012)
Mol. Cell
, vol.40
, pp. 703-713
-
-
Sarkies, P.1
Reams, C.2
Simpson, L.J.3
Sale, J.E.4
-
88
-
-
84872104689
-
Mechanism of replicative DNA polymerase d pausing and a potential role for DNA polymerase k in common fragile site replication
-
Walsh, E., Wang, X., Lee, M.Y. and Eckert, K.A. (2013) Mechanism of replicative DNA polymerase d pausing and a potential role for DNA polymerase k in common fragile site replication. J. Mol. Biol., 425, 232-243.
-
(2013)
J. Mol. Biol
, vol.425
, pp. 232-243
-
-
Walsh, E.1
Wang, X.2
Lee, M.Y.3
Eckert, K.A.4
-
89
-
-
33847060906
-
Yeast DNA polymerase z: Beyond translesion DNA synthesis
-
Shcherbakova, P.V. (2006) Yeast DNA polymerase z: Beyond translesion DNA synthesis. Chemtracts, 19, 100-110.
-
(2006)
Chemtracts
, vol.19
, pp. 100-110
-
-
Shcherbakova, P.V.1
-
90
-
-
0028859670
-
Polymerase d variants in RER colorectal tumours
-
da Costa, L.T., Liu, B., el-Deiry, W., Hamilton, S.R., Kinzler, K.W., Vogelstein, B., Markowitz, S., Willson, J.K., de la Chapelle, A., Downey, K.M. et al. (1995) Polymerase d variants in RER colorectal tumours. Nat. Genet., 9, 10-11.
-
(1995)
Nat. Genet
, vol.9
, pp. 10-11
-
-
Da Costa, L.T.1
Liu, B.2
El-Deiry, W.3
Hamilton, S.R.4
Kinzler, K.W.5
Vogelstein, B.6
Markowitz, S.7
Willson, J.K.8
De La Chapelle, A.9
Downey, K.M.10
-
91
-
-
0033559182
-
Detection of mutations in the DNA polymerase d gene of human sporadic colorectal cancers and colon cancer cell lines
-
Flohr, T., Dai, J.C., Buttner, J., Popanda, O., Hagmuller, E. and Thielmann, H.W. (1999) Detection of mutations in the DNA polymerase d gene of human sporadic colorectal cancers and colon cancer cell lines. Int. J. Cancer, 80, 919-929.
-
(1999)
Int. J. Cancer
, vol.80
, pp. 919-929
-
-
Flohr, T.1
Dai, J.C.2
Buttner, J.3
Popanda, O.4
Hagmuller, E.5
Thielmann, H.W.6
-
92
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
Cancer Genome Atlas Network
-
Cancer Genome Atlas Network. (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature, 487, 330-337.
-
(2012)
Nature
, vol.487
, pp. 330-337
-
-
-
93
-
-
84865459654
-
Recurrent R-spondin fusions in colon cancer
-
Seshagiri, S., Stawiski, E.W., Durinck, S., Modrusan, Z., Storm, E.E., Conboy, C.B., Chaudhuri, S., Guan, Y., Janakiraman, V., Jaiswal, B.S. et al. (2012) Recurrent R-spondin fusions in colon cancer. Nature, 488, 660-664.
-
(2012)
Nature
, vol.488
, pp. 660-664
-
-
Seshagiri, S.1
Stawiski, E.W.2
Durinck, S.3
Modrusan, Z.4
Storm, E.E.5
Conboy, C.B.6
Chaudhuri, S.7
Guan, Y.8
Janakiraman, V.9
Jaiswal, B.S.10
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