Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism

Journal of Molecular Biology

Volumn 269, Issue 2, 1997, Pages 176-187

  Rosche, William A ^a,b   Trinh, Thuan Q ^a,c   Sinden, Richard R ^a  

^a TEXAS A AND M HEALTH SCIENCE CENTER   (United States)

^b BOSTON UNIVERSITY SCHOOL OF PUBLIC HEALTH   (United States)

^c Life Technologies Inc   (United States)

Author keywords

DNA secondary structure mutagenesis; Intermolecular strand switch; Quasipalindrome; Replication; Spontaneous mutagenesis

Indexed keywords

CHLORAMPHENICOL ACETYLTRANSFERASE; PLASMID DNA;

ARTICLE; CONTROLLED STUDY; DNA REPLICATION; DNA REPLICATION ORIGIN; DNA STRUCTURE; FRAMESHIFT MUTATION; GENETIC SELECTION; MOLECULAR CLONING; MUTATION RATE; NONHUMAN; PLASMID; PRIORITY JOURNAL; SPONTANEOUS MUTATION; STOP CODON;

FELIS CATUS;

EID: 0031556020     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1034     Document Type: Article

References (37)

1. n. Proc. Natl Acad. Sci. USA. 88:1991;507-511.
2. Basic-Zaninovic T., Palombo F., Bignami M., Dogliotti E. Fidelity of replication of the leading and lagging DNA strands opposite N-methyl-N-nitrosourea-induced DNA damage in human cells. Nucl. Acids Res. 20:1992;6543-6548.
3. Bateman J. F., Lamande S. R., Dahl H. M., Chan D., Mascara T., Cole W. G. A frameshift mutation results in a truncated nonfunctional carboxyl-terminal Pro-1(I) propeptide of type I collagen in osteogenesis imperfecta. J. Biol. Chem. 264:1989;10960-10964.
4. Bebenek K., Abbotts J., Roberts J. D., Wilson S. H., Kunkel T. A. Specificity and mechanism of error-prone replication by human immunodeficiency virus-1 reverse transcriptase. J. Biol. Chem. 264:1989;16948-16956.
5. Bebenek K., Abbotts J., Wilson S. H., Kunkel T. A. Error-prone polymerization by HIV-1 reverse transcriptase. J. Biol. Chem. 268:1993;10324-10334.
6. Betz J. L., Sadler J. R. Variants of a cloned synthetic lactose operator. II. Chloramphenicol-resistant revertants retaining a lactose operator in the CAT gene of plasmid pBR325. Gene. 15:1981;187-200.
7. Bohr V. A., Smith C. A., Okumoto D. A., Hanawalt P. C. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell. 40:1985;359-369.
8. Cha R. S., Zarbl H., Keohavong P., Thilly W. G. Mismatch amplification assay (MAMA): application to the c-H-ras gene. PCR Meth. Appl. 2:1992;14-20.
9. Cha R. S., Thilly W. G., Zarbl H. N-nitroso-N-methylurea-induced rat mammary tumors arise from cells with preexisting oncogenic HRas1 gene mutations. Proc. Natl Acad. Sci. USA. 91:1994;3749-3753.
10. Cooper D. N., Krawczak M. Mechanisms of insertional mutagenesis in human genes causing genetic disease. Hum. Genet. 87:1991;409-415.
11. Drake J. W., Glickman B. W., Ripley L. S. Updating the theory of mutation. Am. Sci. 71:1983;621-630.
12. Gibbs R. A., Nguyen P., McBride L. J., Koepf S. M., Caskey C. T. Identification of mutations leading to the Lesch-Nyhan syndrome by automated direct DNA sequencing of thein vitro. Proc. Natl Acad. Sci. USA. 86:1989;1919-1923.
13. Glickman B. W., Ripley L. S. Structural intermediates of deletion mutagenesis: a role for palindromic DNA. Proc. Natl Acad. Sci. USA. 81:1984;512-516.
14. Kunkel T. A. Misalignment-mediated DNA synthesis errors. Biochemistry. 29:1990;8003-8011.
15. Lechner R. L., Engler M. J., Richardson C. C. Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase. J. Biol. Chem. 258:1983;11174-11184.
16. Luria S. E., Delbruck M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics. 28:1943;491-511.
17. McHenry C. S. DNA polymerase III holoenzyme ofEscherichia coli. Annu. Rev. Biochem. 57:1988;519-550.
18. Mellon I., Hanawalt P. C. Induction of theEscherichia coli. Nature. 342:1989;95-98.
19. Mellon I., Spivak G., Hanawalt P. C. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell. 51:1988;241-249.
20. Nogueira C. P., McGuire M. C., Graeser C., Bartels C. F., Arpagus M., Van der Spek A. F. L., Lightstone H., Lockridge O., La Du B. N. Identification of a frameshift mutation responsible for the silent phenotype of human serum cholinesterase, Gly117 (GGT→GGAG). Am. J. Hum. Genet. 46:1990;934-942.
21. Ohshima A., Inouye S., Inouye M. In vivo. Proc. Natl Acad. Sci. USA. 89:1992;1016-1020.
22. Papanicolaou C., Ripley L. S. Polymerase-specific differences in the DNA intermediates of frameshift mutagenesis.In vitroEscherichia coli. J. Mol. Biol. 207:1989;335-353.
23. Papanicolaou C., Ripley L. S. Anin vitro. J. Mol. Biol. 221:1991;805-821.
24. Parker B. O., Marinus M. G. Repair of DNA heteroduplexes containing small heterologous sequences inEscherichia coli. Proc. Natl Acad. Sci. USA. 89:1992;1730-1734.
25. Ripley L. S. Model for the participation of quasi-palindromic DNA sequences in frameshift mutation. Proc. Natl Acad. Sci. USA. 79:1982;4128-4132.
26. Ripley L. S. Frameshift mutation: determinants of specificity. Annu. Rev. Genet. 24:1990;189-213.
27. Ripley L. S. Concerted mutagenesis: its potential impact on interpretation of evolutionary relationships. Molecular Evolution of the Major Histocompatibility Complex. 1991;Springer-Verlag, Berlin, Heidelberg.
28. Roberts J. D., Nguyen D., Kunkel T. A. Frameshift fidelity during replication of double-stranded DNA in HeLa cell extracts. Biochemistry. 32:1993;4083-4090.
29. Rosche W. A., Trinh T. Q., Sinden R. R. Differential DNA secondary structure mediated deletion mutagenesis in the leading and lagging strands. J. Bacteriol. 177:1995;4385-4391.
30. Samadashwily G. M., Dayn A., Mirkin S. Suicidal nucleotide sequences for DNA polymerization. EMBO J. 12:1993;4975-4983.
31. Sinha N. K., Morris C. F., Alberts B. M. Efficientin vitro. J. Mol. Biol. 255:1980;4290-4303.
32. Stork P., Loda M., Bosari S., Wiley B., Poppenhausen K., Wolfe H. Detection of k-ras mutations in pancreatic and hepatic neoplasms by non-isotopic mismatch polymerase chain reaction. Oncogene. 6:1991;857-862.
33. Trinh, T. Q. 1990, The role of DNA secondary structure in deletion and duplication between direct repeats inE. coli, University of Cincinnati.
34. Trinh T. Q., Sinden R. R. Preferential DNA secondary structure mutagenesis in the lagging strand of replication inE. coli. Nature. 352:1991;544-547.
35. Trinh T. Q., Sinden R. R. The influence of primary and secondary DNA structure in deletion and duplication between direct repeats inEscherichia coli. Genetics. 134:1993;409-422.
36. Veaute X., Fuchs R. P. Greater susceptibility to mutations in lagging strand of DNA replication inEscherichia coli. Science. 261:1993;598-600.
37. Weaver D. T., DePamphilis M. L. Role of palindromic and non-palindromic sequences in arresting DNA synthesisin vitroin vivo. J. Mol. Biol. 180:1984;961-986.