-
1
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
10.1126/science.1159151, 18483398
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320(5880):1185-1190. 10.1126/science.1159151, 18483398.
-
(2008)
Science
, vol.320
, Issue.5880
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
2
-
-
28344440823
-
MicroRNA function: multiple mechanisms for a tiny RNA?
-
10.1261/rna.2248605, 1370863, 16314451
-
Pillai RS. MicroRNA function: multiple mechanisms for a tiny RNA?. RNA 2005, 11(12):1753-1761. 10.1261/rna.2248605, 1370863, 16314451.
-
(2005)
RNA
, vol.11
, Issue.12
, pp. 1753-1761
-
-
Pillai, R.S.1
-
3
-
-
44449084034
-
The microRNA (miRNA): overview of the RNA genes that modulate gene function
-
10.1007/s12033-007-9013-8, 17999201
-
Ying SY, Chang DC, Lin SL. The microRNA (miRNA): overview of the RNA genes that modulate gene function. Mol Biotechnol 2008, 38(3):257-268. 10.1007/s12033-007-9013-8, 17999201.
-
(2008)
Mol Biotechnol
, vol.38
, Issue.3
, pp. 257-268
-
-
Ying, S.Y.1
Chang, D.C.2
Lin, S.L.3
-
4
-
-
84865423169
-
Conservation and divergence in plant microRNAs
-
10.1007/s11103-011-9829-2, 21996939
-
Jones-Rhoades MW. Conservation and divergence in plant microRNAs. Plant Mol Biol 2012, 80(1):3-16. 10.1007/s11103-011-9829-2, 21996939.
-
(2012)
Plant Mol Biol
, vol.80
, Issue.1
, pp. 3-16
-
-
Jones-Rhoades, M.W.1
-
5
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
10.1016/j.cell.2009.01.046, 19239888
-
Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136(4):669-687. 10.1016/j.cell.2009.01.046, 19239888.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 669-687
-
-
Voinnet, O.1
-
6
-
-
26944437949
-
MicroRNA biogenesis and function in plants
-
10.1016/j.febslet.2005.07.071, 16144699
-
Chen X. MicroRNA biogenesis and function in plants. FEBS Lett 2005, 579(26):5923-5931. 10.1016/j.febslet.2005.07.071, 16144699.
-
(2005)
FEBS Lett
, vol.579
, Issue.26
, pp. 5923-5931
-
-
Chen, X.1
-
7
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez F, Gasciolli V, Crete P, Vaucheret H. The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 2004, 14(4):346-351.
-
(2004)
Curr Biol
, vol.14
, Issue.4
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
8
-
-
66249128639
-
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs
-
10.1093/nar/gkp189, 2685107, 19304749
-
Szarzynska B, Sobkowiak L, Pant BD, Balazadeh S, Scheible WR, Mueller-Roeber B, Jarmolowski A, Szweykowska-Kulinska Z. Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res 2009, 37(9):3083-3093. 10.1093/nar/gkp189, 2685107, 19304749.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.9
, pp. 3083-3093
-
-
Szarzynska, B.1
Sobkowiak, L.2
Pant, B.D.3
Balazadeh, S.4
Scheible, W.R.5
Mueller-Roeber, B.6
Jarmolowski, A.7
Szweykowska-Kulinska, Z.8
-
9
-
-
56449129474
-
Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs
-
10.1093/pcp/pcn146, 2722234, 18829588
-
Kim S, Yang JY, Xu J, Jang IC, Prigge MJ, Chua NH. Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs. Plant Cell Physiol 2008, 49(11):1634-1644. 10.1093/pcp/pcn146, 2722234, 18829588.
-
(2008)
Plant Cell Physiol
, vol.49
, Issue.11
, pp. 1634-1644
-
-
Kim, S.1
Yang, J.Y.2
Xu, J.3
Jang, I.C.4
Prigge, M.J.5
Chua, N.H.6
-
10
-
-
48249158259
-
The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis
-
10.1073/pnas.0804218105, 2481372, 18632581
-
Yu B, Bi L, Zheng B, Ji L, Chevalier D, Agarwal M, Ramachandran V, Li W, Lagrange T, Walker JC, et al. The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci U S A 2008, 105(29):10073-10078. 10.1073/pnas.0804218105, 2481372, 18632581.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.29
, pp. 10073-10078
-
-
Yu, B.1
Bi, L.2
Zheng, B.3
Ji, L.4
Chevalier, D.5
Agarwal, M.6
Ramachandran, V.7
Li, W.8
Lagrange, T.9
Walker, J.C.10
-
11
-
-
84864517927
-
Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis
-
10.1073/pnas.1204915109, 3412041, 22802657
-
Ren G, Xie M, Dou Y, Zhang S, Zhang C, Yu B. Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proc Natl Acad Sci U S A 2012, 109(31):12817-12821. 10.1073/pnas.1204915109, 3412041, 22802657.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.31
, pp. 12817-12821
-
-
Ren, G.1
Xie, M.2
Dou, Y.3
Zhang, S.4
Zhang, C.5
Yu, B.6
-
12
-
-
84868092917
-
Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis
-
10.1073/pnas.1216199109, 3497810, 23071326
-
Zhan X, Wang B, Li H, Liu R, Kalia RK, Zhu JK, Chinnusamy V. Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc Natl Acad Sci U S A 2012, 109(44):18198-18203. 10.1073/pnas.1216199109, 3497810, 23071326.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.44
, pp. 18198-18203
-
-
Zhan, X.1
Wang, B.2
Li, H.3
Liu, R.4
Kalia, R.K.5
Zhu, J.K.6
Chinnusamy, V.7
-
13
-
-
84869054771
-
Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1
-
10.1016/j.cell.2012.09.039, 23141542
-
Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, Macek B, Weigel D. Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 2012, 151(4):859-870. 10.1016/j.cell.2012.09.039, 23141542.
-
(2012)
Cell
, vol.151
, Issue.4
, pp. 859-870
-
-
Manavella, P.A.1
Hagmann, J.2
Ott, F.3
Laubinger, S.4
Franz, M.5
Macek, B.6
Weigel, D.7
-
14
-
-
33745765847
-
STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis
-
10.1105/tpc.106.042184, 1488911, 16751345
-
Lee BH, Kapoor A, Zhu J, Zhu JK. STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. Plant Cell 2006, 18(7):1736-1749. 10.1105/tpc.106.042184, 1488911, 16751345.
-
(2006)
Plant Cell
, vol.18
, Issue.7
, pp. 1736-1749
-
-
Lee, B.H.1
Kapoor, A.2
Zhu, J.3
Zhu, J.K.4
-
15
-
-
84873654415
-
STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis
-
10.1093/nar/gks1309, 3561960, 23268445
-
Ben Chaabane S, Liu R, Chinnusamy V, Kwon Y, Park JH, Kim SY, Zhu JK, Yang SW, Lee BH. STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis. Nucleic Acids Res 2013, 41(3):1984-1997. 10.1093/nar/gks1309, 3561960, 23268445.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.3
, pp. 1984-1997
-
-
Ben Chaabane, S.1
Liu, R.2
Chinnusamy, V.3
Kwon, Y.4
Park, J.H.5
Kim, S.Y.6
Zhu, J.K.7
Yang, S.W.8
Lee, B.H.9
-
16
-
-
23944493378
-
Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
-
10.1016/j.cub.2005.07.029, 16111943
-
Li J, Yang Z, Yu B, Liu J, Chen X. Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 2005, 15(16):1501-1507. 10.1016/j.cub.2005.07.029, 16111943.
-
(2005)
Curr Biol
, vol.15
, Issue.16
, pp. 1501-1507
-
-
Li, J.1
Yang, Z.2
Yu, B.3
Liu, J.4
Chen, X.5
-
17
-
-
32644454064
-
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide
-
10.1093/nar/gkj474, 1356533, 16449203
-
Yang Z, Ebright YW, Yu B, Chen X. HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide. Nucleic Acids Res 2006, 34(2):667-675. 10.1093/nar/gkj474, 1356533, 16449203.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.2
, pp. 667-675
-
-
Yang, Z.1
Ebright, Y.W.2
Yu, B.3
Chen, X.4
-
18
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
10.1101/gad.1201404, 415643, 15131082
-
Vaucheret H, Vazquez F, Crete P, Bartel DP. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 2004, 18(10):1187-1197. 10.1101/gad.1201404, 415643, 15131082.
-
(2004)
Genes Dev
, vol.18
, Issue.10
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
19
-
-
84875450599
-
Global microRNA elevation by inducible Exportin 5 regulates cell cycle entry
-
10.1261/rna.036608.112, 23431327
-
Iwasaki YW, Kiga K, Kayo H, Fukuda-Yuzawa Y, Weise J, Inada T, Tomita M, Ishihama Y, Fukao T. Global microRNA elevation by inducible Exportin 5 regulates cell cycle entry. RNA 2013, 19(4):490-497. 10.1261/rna.036608.112, 23431327.
-
(2013)
RNA
, vol.19
, Issue.4
, pp. 490-497
-
-
Iwasaki, Y.W.1
Kiga, K.2
Kayo, H.3
Fukuda-Yuzawa, Y.4
Weise, J.5
Inada, T.6
Tomita, M.7
Ishihama, Y.8
Fukao, T.9
-
20
-
-
73149089202
-
Transcriptional control of gene expression by microRNAs
-
10.1016/j.cell.2009.12.023, 20085706
-
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W. Transcriptional control of gene expression by microRNAs. Cell 2010, 140(1):111-122. 10.1016/j.cell.2009.12.023, 20085706.
-
(2010)
Cell
, vol.140
, Issue.1
, pp. 111-122
-
-
Khraiwesh, B.1
Arif, M.A.2
Seumel, G.I.3
Ossowski, S.4
Weigel, D.5
Reski, R.6
Frank, W.7
-
21
-
-
84866870375
-
Role of microRNAs and other sRNAs of plants in their changing environments
-
10.1016/j.jplph.2012.03.009, 22647959
-
Kruszka K, Pieczynski M, Windels D, Bielewicz D, Jarmolowski A, Szweykowska-Kulinska Z, Vazquez F. Role of microRNAs and other sRNAs of plants in their changing environments. J Plant Physiol 2012, 169(16):1664-1672. 10.1016/j.jplph.2012.03.009, 22647959.
-
(2012)
J Plant Physiol
, vol.169
, Issue.16
, pp. 1664-1672
-
-
Kruszka, K.1
Pieczynski, M.2
Windels, D.3
Bielewicz, D.4
Jarmolowski, A.5
Szweykowska-Kulinska, Z.6
Vazquez, F.7
-
22
-
-
78651293534
-
MiRBase: integrating microRNA annotation and deep-sequencing data
-
Database issue, 3013655, 21037258
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011, 39(Database issue):D152-D157. 3013655, 21037258.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
23
-
-
75549083571
-
PMRD: plant microRNA database
-
Database issue, 2808885, 19808935
-
Zhang Z, Yu J, Li D, Liu F, Zhou X, Wang T, Ling Y, Su Z. PMRD: plant microRNA database. Nucleic Acids Res 2010, 38(Database issue):D806-D813. 2808885, 19808935.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhang, Z.1
Yu, J.2
Li, D.3
Liu, F.4
Zhou, X.5
Wang, T.6
Ling, Y.7
Su, Z.8
-
24
-
-
79952097693
-
Next Generation Sequencing of miRNAs - Strategies, Resources and Methods
-
Motamen S. Next Generation Sequencing of miRNAs - Strategies, Resources and Methods. Genes 2010, 1(1):70-84.
-
(2010)
Genes
, vol.1
, Issue.1
, pp. 70-84
-
-
Motamen, S.1
-
25
-
-
84885637808
-
Identification and abundance of miRNA in chicken hypothalamus tissue determined by Solexa sequencing
-
10.4238/2012.October.2.2, 23079998
-
Sun GR, Li M, Li GX, Tian YD, Han RL, Kang XT. Identification and abundance of miRNA in chicken hypothalamus tissue determined by Solexa sequencing. Genet Mol Res 2012, 11(4):4682-4694. 10.4238/2012.October.2.2, 23079998.
-
(2012)
Genet Mol Res
, vol.11
, Issue.4
, pp. 4682-4694
-
-
Sun, G.R.1
Li, M.2
Li, G.X.3
Tian, Y.D.4
Han, R.L.5
Kang, X.T.6
-
26
-
-
84862701358
-
Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing
-
10.1371/journal.pone.0038298, 3380046, 22745662
-
Osanto S, Qin Y, Buermans HP, Berkers J, Lerut E, Goeman JJ, van Poppel H. Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing. PLoS One 2012, 7(6):e38298. 10.1371/journal.pone.0038298, 3380046, 22745662.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Osanto, S.1
Qin, Y.2
Buermans, H.P.3
Berkers, J.4
Lerut, E.5
Goeman, J.J.6
van Poppel, H.7
-
27
-
-
84876144494
-
Transcript profiling of microRNAs during the early development of the maize brace root via Solexa sequencing
-
Liu P, Yan K, Lei YX, Xu R, Zhang YM, Yang GD, Huang JG, Wu CA, Zheng CC. Transcript profiling of microRNAs during the early development of the maize brace root via Solexa sequencing. Genomics 2012, 101(2):149-156.
-
(2012)
Genomics
, vol.101
, Issue.2
, pp. 149-156
-
-
Liu, P.1
Yan, K.2
Lei, Y.X.3
Xu, R.4
Zhang, Y.M.5
Yang, G.D.6
Huang, J.G.7
Wu, C.A.8
Zheng, C.C.9
-
28
-
-
84864828309
-
High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
-
10.1007/s00438-012-0699-3, 22643909
-
Wang F, Li L, Liu L, Li H, Zhang Y, Yao Y, Ni Z, Gao J. High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Mol Genet Genomics 2012, 287(7):555-563. 10.1007/s00438-012-0699-3, 22643909.
-
(2012)
Mol Genet Genomics
, vol.287
, Issue.7
, pp. 555-563
-
-
Wang, F.1
Li, L.2
Liu, L.3
Li, H.4
Zhang, Y.5
Yao, Y.6
Ni, Z.7
Gao, J.8
-
29
-
-
75149175703
-
Prediction of novel miRNAs and associated target genes in Glycine max
-
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, et al. Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinforma 2010, 11(Suppl 1):S14.
-
(2010)
BMC Bioinforma
, vol.11
, Issue.SUPPL. 1
-
-
Joshi, T.1
Yan, Z.2
Libault, M.3
Jeong, D.H.4
Park, S.5
Green, P.J.6
Sherrier, D.J.7
Farmer, A.8
May, G.9
Meyers, B.C.10
-
30
-
-
77949268292
-
Computational approaches for microRNA studies: a review
-
Li L, Xu J, Yang D, Tan X, Wang H. Computational approaches for microRNA studies: a review. Mamm Genome 2010, 21(1-2):1-12.
-
(2010)
Mamm Genome
, vol.21
, Issue.1-2
, pp. 1-12
-
-
Li, L.1
Xu, J.2
Yang, D.3
Tan, X.4
Wang, H.5
-
31
-
-
79953137130
-
Computational analysis of miRNA targets in plants: current status and challenges
-
10.1093/bib/bbq065, 20858738
-
Dai X, Zhuang Z, Zhao PX. Computational analysis of miRNA targets in plants: current status and challenges. Brief Bioinform 2011, 12(2):115-121. 10.1093/bib/bbq065, 20858738.
-
(2011)
Brief Bioinform
, vol.12
, Issue.2
, pp. 115-121
-
-
Dai, X.1
Zhuang, Z.2
Zhao, P.X.3
-
32
-
-
84855804597
-
Current approaches to micro-RNA analysis and target gene prediction
-
10.1007/s13353-011-0060-2, 21892624
-
Lhakhang TW, Chaudhry MA. Current approaches to micro-RNA analysis and target gene prediction. J Appl Genet 2012, 53(2):149-158. 10.1007/s13353-011-0060-2, 21892624.
-
(2012)
J Appl Genet
, vol.53
, Issue.2
, pp. 149-158
-
-
Lhakhang, T.W.1
Chaudhry, M.A.2
-
33
-
-
69549135413
-
Lupeol, a novel anti-inflammatory and anti-cancer dietary triterpene
-
10.1016/j.canlet.2009.04.033, 2764818, 19464787
-
Saleem M. Lupeol, a novel anti-inflammatory and anti-cancer dietary triterpene. Cancer Lett 2009, 285(2):109-115. 10.1016/j.canlet.2009.04.033, 2764818, 19464787.
-
(2009)
Cancer Lett
, vol.285
, Issue.2
, pp. 109-115
-
-
Saleem, M.1
-
34
-
-
42449110799
-
[Cancer chemopreventive agents: glucosinolates and their decomposition products in white cabbage (Brassica oleracea var. capitata)]
-
Smiechowska A, Bartoszek A, Namiesnik J. [Cancer chemopreventive agents: glucosinolates and their decomposition products in white cabbage (Brassica oleracea var. capitata)]. Postepy Hig Med Dosw (Online) 2008, 62:125-140.
-
(2008)
Postepy Hig Med Dosw (Online)
, vol.62
, pp. 125-140
-
-
Smiechowska, A.1
Bartoszek, A.2
Namiesnik, J.3
-
35
-
-
84864126971
-
Identification and characterization of microRNAs and their target genes in Brassica oleracea
-
10.1016/j.gene.2012.06.002, 22688123
-
Wang J, Yang X, Xu H, Chi X, Zhang M, Hou X. Identification and characterization of microRNAs and their target genes in Brassica oleracea. Gene 2012, 505(2):300-308. 10.1016/j.gene.2012.06.002, 22688123.
-
(2012)
Gene
, vol.505
, Issue.2
, pp. 300-308
-
-
Wang, J.1
Yang, X.2
Xu, H.3
Chi, X.4
Zhang, M.5
Hou, X.6
-
36
-
-
45549087643
-
Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
-
10.1016/j.febslet.2008.06.011, 18558089
-
He XF, Fang YY, Feng L, Guo HS. Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica. FEBS Lett 2008, 582(16):2445-2452. 10.1016/j.febslet.2008.06.011, 18558089.
-
(2008)
FEBS Lett
, vol.582
, Issue.16
, pp. 2445-2452
-
-
He, X.F.1
Fang, Y.Y.2
Feng, L.3
Guo, H.S.4
-
37
-
-
84870578799
-
Identifying conserved and novel microRNAs in developing seeds of Brassica napus using deep sequencing
-
10.1371/journal.pone.0050663, 3511302, 23226347
-
Korbes AP, Machado RD, Guzman F, Almerao MP, de Oliveira LF, Loss-Morais G, Turchetto-Zolet AC, Cagliari A, dos Santos Maraschin F, Margis-Pinheiro M, et al. Identifying conserved and novel microRNAs in developing seeds of Brassica napus using deep sequencing. PLoS One 2012, 7(11):e50663. 10.1371/journal.pone.0050663, 3511302, 23226347.
-
(2012)
PLoS One
, vol.7
, Issue.11
-
-
Korbes, A.P.1
Machado, R.D.2
Guzman, F.3
Almerao, M.P.4
de Oliveira, L.F.5
Loss-Morais, G.6
Turchetto-Zolet, A.C.7
Cagliari, A.8
dos Santos Maraschin, F.9
Margis-Pinheiro, M.10
-
38
-
-
84863022427
-
Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
-
10.1104/pp.111.187666, 3271769, 22138974
-
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ. Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes. Plant Physiol 2012, 158(2):813-823. 10.1104/pp.111.187666, 3271769, 22138974.
-
(2012)
Plant Physiol
, vol.158
, Issue.2
, pp. 813-823
-
-
Zhao, Y.T.1
Wang, M.2
Fu, S.X.3
Yang, W.C.4
Qi, C.K.5
Wang, X.J.6
-
39
-
-
84872141330
-
Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of brassica juncea
-
10.1186/1471-2164-14-9, 3553062, 23324572
-
Yang J, Liu X, Xu B, Zhao N, Yang X, Zhang M. Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of brassica juncea. BMC Genomics 2013, 14:9. 10.1186/1471-2164-14-9, 3553062, 23324572.
-
(2013)
BMC Genomics
, vol.14
, pp. 9
-
-
Yang, J.1
Liu, X.2
Xu, B.3
Zhao, N.4
Yang, X.5
Zhang, M.6
-
40
-
-
84865461257
-
Identification and comparative profiling of miRNAs in an early flowering mutant of trifoliate orange and its wild type by genome-wide deep sequencing
-
10.1371/journal.pone.0043760, 3429500, 22952759
-
Sun LM, Ai XY, Li WY, Guo WW, Deng XX, Hu CG, Zhang JZ. Identification and comparative profiling of miRNAs in an early flowering mutant of trifoliate orange and its wild type by genome-wide deep sequencing. PLoS One 2012, 7(8):e43760. 10.1371/journal.pone.0043760, 3429500, 22952759.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Sun, L.M.1
Ai, X.Y.2
Li, W.Y.3
Guo, W.W.4
Deng, X.X.5
Hu, C.G.6
Zhang, J.Z.7
-
41
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
10.1371/journal.pone.0000219, 1790633, 17299599
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2007, 2(2):e219. 10.1371/journal.pone.0000219, 1790633, 17299599.
-
(2007)
PLoS One
, vol.2
, Issue.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
-
42
-
-
79961204641
-
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
-
10.1104/pp.111.172627, 3149951, 21571671
-
Devers EA, Branscheid A, May P, Krajinski F. Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol 2011, 156(4):1990-2010. 10.1104/pp.111.172627, 3149951, 21571671.
-
(2011)
Plant Physiol
, vol.156
, Issue.4
, pp. 1990-2010
-
-
Devers, E.A.1
Branscheid, A.2
May, P.3
Krajinski, F.4
-
43
-
-
84873254632
-
Tissue-Specific Silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a
-
10.1104/pp.112.207068, 3561020, 23204429
-
Manavella PA, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, Weigel D. Tissue-Specific Silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiol 2013, 161(2):805-812. 10.1104/pp.112.207068, 3561020, 23204429.
-
(2013)
Plant Physiol
, vol.161
, Issue.2
, pp. 805-812
-
-
Manavella, P.A.1
Koenig, D.2
Rubio-Somoza, I.3
Burbano, H.A.4
Becker, C.5
Weigel, D.6
-
44
-
-
34250717043
-
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
-
10.1105/tpc.107.050062, 1867363, 17400893
-
Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 2007, 19(3):926-942. 10.1105/tpc.107.050062, 1867363, 17400893.
-
(2007)
Plant Cell
, vol.19
, Issue.3
, pp. 926-942
-
-
Howell, M.D.1
Fahlgren, N.2
Chapman, E.J.3
Cumbie, J.S.4
Sullivan, C.M.5
Givan, S.A.6
Kasschau, K.D.7
Carrington, J.C.8
-
45
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
10.1016/j.devcel.2005.01.018, 15809034
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D. Specific effects of microRNAs on the plant transcriptome. Dev Cell 2005, 8(4):517-527. 10.1016/j.devcel.2005.01.018, 15809034.
-
(2005)
Dev Cell
, vol.8
, Issue.4
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
46
-
-
82955194941
-
Identification of conserved microRNAs and their targets in Chinese cabbage (Brassica rapa subsp. pekinensis)
-
10.1139/g11-069, 22111519
-
Wang J, Hou X, Yang X. Identification of conserved microRNAs and their targets in Chinese cabbage (Brassica rapa subsp. pekinensis). Genome 2011, 54(12):1029-1040. 10.1139/g11-069, 22111519.
-
(2011)
Genome
, vol.54
, Issue.12
, pp. 1029-1040
-
-
Wang, J.1
Hou, X.2
Yang, X.3
-
47
-
-
84869099388
-
Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana
-
10.1371/journal.pone.0048951, 3498362, 23155433
-
Liang G, He H, Yu D. Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana. PLoS One 2012, 7(11):e48951. 10.1371/journal.pone.0048951, 3498362, 23155433.
-
(2012)
PLoS One
, vol.7
, Issue.11
-
-
Liang, G.1
He, H.2
Yu, D.3
-
48
-
-
78650971549
-
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
-
10.1186/1471-2229-11-5, 3023735, 21219599
-
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5. 10.1186/1471-2229-11-5, 3023735, 21219599.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 5
-
-
Song, Q.X.1
Liu, Y.F.2
Hu, X.Y.3
Zhang, W.K.4
Ma, B.5
Chen, S.Y.6
Zhang, J.S.7
-
49
-
-
84860565375
-
Identification and characterization of miRNAome in tobacco (Nicotiana tabacum) by deep sequencing combined with microarray
-
10.1016/j.gene.2012.04.002, 22575711
-
Guo Y, Liu H, Yang Z, Chen J, Sun Y, Ren X. Identification and characterization of miRNAome in tobacco (Nicotiana tabacum) by deep sequencing combined with microarray. Gene 2012, 501(1):24-32. 10.1016/j.gene.2012.04.002, 22575711.
-
(2012)
Gene
, vol.501
, Issue.1
, pp. 24-32
-
-
Guo, Y.1
Liu, H.2
Yang, Z.3
Chen, J.4
Sun, Y.5
Ren, X.6
-
50
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
10.1105/tpc.110.082784, 3077775, 21317375
-
Cuperus JT, Fahlgren N, Carrington JC. Evolution and functional diversification of MIRNA genes. Plant Cell 2011, 23(2):431-442. 10.1105/tpc.110.082784, 3077775, 21317375.
-
(2011)
Plant Cell
, vol.23
, Issue.2
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
51
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
10.1186/1471-2229-8-37, 2358906, 18416839
-
Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 2008, 8:37. 10.1186/1471-2229-8-37, 2358906, 18416839.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
52
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
10.1016/S0092-8674(03)00801-8, 14567918
-
Khvorova A, Reynolds A, Jayasena SD. Functional siRNAs and miRNAs exhibit strand bias. Cell 2003, 115(2):209-216. 10.1016/S0092-8674(03)00801-8, 14567918.
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
53
-
-
78049263858
-
MiRNAs in the biogenesis of trans-acting siRNAs in higher plants
-
10.1016/j.semcdb.2010.03.008, 20359543
-
Allen E, Howell MD. miRNAs in the biogenesis of trans-acting siRNAs in higher plants. Semin Cell Dev Biol 2010, 21(8):798-804. 10.1016/j.semcdb.2010.03.008, 20359543.
-
(2010)
Semin Cell Dev Biol
, vol.21
, Issue.8
, pp. 798-804
-
-
Allen, E.1
Howell, M.D.2
-
54
-
-
84857136650
-
Plant secondary siRNA production determined by microRNA-duplex structure
-
10.1073/pnas.1200169109, 3289316, 22308502
-
Manavella PA, Koenig D, Weigel D. Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci U S A 2012, 109(7):2461-2466. 10.1073/pnas.1200169109, 3289316, 22308502.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.7
, pp. 2461-2466
-
-
Manavella, P.A.1
Koenig, D.2
Weigel, D.3
-
55
-
-
0034192491
-
The WRKY superfamily of plant transcription factors
-
10.1016/S1360-1385(00)01600-9, 10785665
-
Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000, 5(5):199-206. 10.1016/S1360-1385(00)01600-9, 10785665.
-
(2000)
Trends Plant Sci
, vol.5
, Issue.5
, pp. 199-206
-
-
Eulgem, T.1
Rushton, P.J.2
Robatzek, S.3
Somssich, I.E.4
-
56
-
-
0034755053
-
A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes
-
10.1046/j.1365-313X.2001.01131.x, 11722756
-
Robatzek S, Somssich IE. A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes. Plant J 2001, 28(2):123-133. 10.1046/j.1365-313X.2001.01131.x, 11722756.
-
(2001)
Plant J
, vol.28
, Issue.2
, pp. 123-133
-
-
Robatzek, S.1
Somssich, I.E.2
-
57
-
-
79956126272
-
MiR172 signals are incorporated into the miR156 signaling pathway at the SPL3/4/5 genes in Arabidopsis developmental transitions
-
Jung JH, Seo PJ, Kang SK, Park CM. miR172 signals are incorporated into the miR156 signaling pathway at the SPL3/4/5 genes in Arabidopsis developmental transitions. Plant Mol Biol 2011, 76(1-2):35-45.
-
(2011)
Plant Mol Biol
, vol.76
, Issue.1-2
, pp. 35-45
-
-
Jung, J.H.1
Seo, P.J.2
Kang, S.K.3
Park, C.M.4
-
58
-
-
68749109488
-
Plant phase transitions make a SPLash
-
10.1016/j.cell.2009.08.011, 19703391
-
Fornara F, Coupland G. Plant phase transitions make a SPLash. Cell 2009, 138(4):625-627. 10.1016/j.cell.2009.08.011, 19703391.
-
(2009)
Cell
, vol.138
, Issue.4
, pp. 625-627
-
-
Fornara, F.1
Coupland, G.2
-
59
-
-
40649117128
-
MYB transcription factors that colour our fruit
-
10.1016/j.tplants.2007.11.012, 18280199
-
Allan AC, Hellens RP, Laing WA. MYB transcription factors that colour our fruit. Trends Plant Sci 2008, 13(3):99-102. 10.1016/j.tplants.2007.11.012, 18280199.
-
(2008)
Trends Plant Sci
, vol.13
, Issue.3
, pp. 99-102
-
-
Allan, A.C.1
Hellens, R.P.2
Laing, W.A.3
-
60
-
-
77957341467
-
MYB transcription factors in Arabidopsis
-
10.1016/j.tplants.2010.06.005, 20674465
-
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L. MYB transcription factors in Arabidopsis. Trends Plant Sci 2010, 15(10):573-581. 10.1016/j.tplants.2010.06.005, 20674465.
-
(2010)
Trends Plant Sci
, vol.15
, Issue.10
, pp. 573-581
-
-
Dubos, C.1
Stracke, R.2
Grotewold, E.3
Weisshaar, B.4
Martin, C.5
Lepiniec, L.6
-
61
-
-
71049131732
-
A new role for plant R2R3-MYB transcription factors in cell cycle regulation
-
10.1038/cr.2009.123, 19881525
-
Cominelli E, Tonelli C. A new role for plant R2R3-MYB transcription factors in cell cycle regulation. Cell Res 2009, 19(11):1231-1232. 10.1038/cr.2009.123, 19881525.
-
(2009)
Cell Res
, vol.19
, Issue.11
, pp. 1231-1232
-
-
Cominelli, E.1
Tonelli, C.2
-
62
-
-
79952334906
-
MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects
-
10.1186/1758-907X-1-18, 2988730, 21029441
-
Allen RS, Li J, Alonso-Peral MM, White RG, Gubler F, Millar AA. MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects. Silence 2010, 1(1):18. 10.1186/1758-907X-1-18, 2988730, 21029441.
-
(2010)
Silence
, vol.1
, Issue.1
, pp. 18
-
-
Allen, R.S.1
Li, J.2
Alonso-Peral, M.M.3
White, R.G.4
Gubler, F.5
Millar, A.A.6
-
63
-
-
33644868495
-
Auxin receptors: a new role for F-box proteins
-
10.1016/j.ceb.2006.02.001, 16488128
-
Parry G, Estelle M. Auxin receptors: a new role for F-box proteins. Curr Opin Cell Biol 2006, 18(2):152-156. 10.1016/j.ceb.2006.02.001, 16488128.
-
(2006)
Curr Opin Cell Biol
, vol.18
, Issue.2
, pp. 152-156
-
-
Parry, G.1
Estelle, M.2
-
64
-
-
21344458139
-
Plant development is regulated by a family of auxin receptor F box proteins
-
10.1016/j.devcel.2005.05.014, 15992545
-
Dharmasiri N, Dharmasiri S, Weijers D, Lechner E, Yamada M, Hobbie L, Ehrismann JS, Jurgens G, Estelle M. Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 2005, 9(1):109-119. 10.1016/j.devcel.2005.05.014, 15992545.
-
(2005)
Dev Cell
, vol.9
, Issue.1
, pp. 109-119
-
-
Dharmasiri, N.1
Dharmasiri, S.2
Weijers, D.3
Lechner, E.4
Yamada, M.5
Hobbie, L.6
Ehrismann, J.S.7
Jurgens, G.8
Estelle, M.9
-
65
-
-
81155134163
-
Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis
-
10.1007/s11103-011-9838-1, 22042293
-
Chen ZH, Bao ML, Sun YZ, Yang YJ, Xu XH, Wang JH, Han N, Bian HW, Zhu MY. Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis. Plant Mol Biol 2011, 77(6):619-629. 10.1007/s11103-011-9838-1, 22042293.
-
(2011)
Plant Mol Biol
, vol.77
, Issue.6
, pp. 619-629
-
-
Chen, Z.H.1
Bao, M.L.2
Sun, Y.Z.3
Yang, Y.J.4
Xu, X.H.5
Wang, J.H.6
Han, N.7
Bian, H.W.8
Zhu, M.Y.9
-
66
-
-
54749156380
-
Control of jasmonate biosynthesis and senescence by miR319 targets
-
10.1371/journal.pbio.0060230, 2553836, 18816164
-
Schommer C, Palatnik JF, Aggarwal P, Chetelat A, Cubas P, Farmer EE, Nath U, Weigel D. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol 2008, 6(9):e230. 10.1371/journal.pbio.0060230, 2553836, 18816164.
-
(2008)
PLoS Biol
, vol.6
, Issue.9
-
-
Schommer, C.1
Palatnik, J.F.2
Aggarwal, P.3
Chetelat, A.4
Cubas, P.5
Farmer, E.E.6
Nath, U.7
Weigel, D.8
-
67
-
-
76049118057
-
MiR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis
-
10.1073/pnas.0908718106, 2799693, 20007771
-
Nag A, King S, Jack T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A 2009, 106(52):22534-22539. 10.1073/pnas.0908718106, 2799693, 20007771.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.52
, pp. 22534-22539
-
-
Nag, A.1
King, S.2
Jack, T.3
-
68
-
-
0033593048
-
Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: finding of a lipase motif and the induction by methyl jasmonate
-
10.1073/pnas.96.26.15362, 24824, 10611389
-
Tsuchiya T, Ohta H, Okawa K, Iwamatsu A, Shimada H, Masuda T, Takamiya K. Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: finding of a lipase motif and the induction by methyl jasmonate. Proc Natl Acad Sci U S A 1999, 96(26):15362-15367. 10.1073/pnas.96.26.15362, 24824, 10611389.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.26
, pp. 15362-15367
-
-
Tsuchiya, T.1
Ohta, H.2
Okawa, K.3
Iwamatsu, A.4
Shimada, H.5
Masuda, T.6
Takamiya, K.7
-
69
-
-
80455162420
-
Expression of enzymes involved in chlorophyll catabolism in Arabidopsis is light controlled
-
10.1104/pp.111.185504, 3252159, 21896889
-
Banas AK, Labuz J, Sztatelman O, Gabrys H, Fiedor L. Expression of enzymes involved in chlorophyll catabolism in Arabidopsis is light controlled. Plant Physiol 2011, 157(3):1497-1504. 10.1104/pp.111.185504, 3252159, 21896889.
-
(2011)
Plant Physiol
, vol.157
, Issue.3
, pp. 1497-1504
-
-
Banas, A.K.1
Labuz, J.2
Sztatelman, O.3
Gabrys, H.4
Fiedor, L.5
-
70
-
-
77952965888
-
MicroRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress
-
10.1093/jxb/erq063, 20335408
-
Martin RC, Liu PP, Goloviznina NA, Nonogaki H. microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress. J Exp Bot 2010, 61(9):2229-2234. 10.1093/jxb/erq063, 20335408.
-
(2010)
J Exp Bot
, vol.61
, Issue.9
, pp. 2229-2234
-
-
Martin, R.C.1
Liu, P.P.2
Goloviznina, N.A.3
Nonogaki, H.4
-
71
-
-
77953516310
-
MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana
-
Liang G, Yang F, Yu D. MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana. Plant J 2010, 62(6):1046-1057.
-
(2010)
Plant J
, vol.62
, Issue.6
, pp. 1046-1057
-
-
Liang, G.1
Yang, F.2
Yu, D.3
-
72
-
-
65349110326
-
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor
-
10.1186/1471-2199-10-29, 2670843, 19351418
-
Zhao B, Ge L, Liang R, Li W, Ruan K, Lin H, Jin Y. Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol Biol 2009, 10:29. 10.1186/1471-2199-10-29, 2670843, 19351418.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 29
-
-
Zhao, B.1
Ge, L.2
Liang, R.3
Li, W.4
Ruan, K.5
Lin, H.6
Jin, Y.7
-
73
-
-
34848840901
-
Genome-wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum
-
Stephenson TJ, McIntyre CL, Collet C, Xue GP. Genome-wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum. Plant Mol Biol 2007, 65(1-2):77-92.
-
(2007)
Plant Mol Biol
, vol.65
, Issue.1-2
, pp. 77-92
-
-
Stephenson, T.J.1
McIntyre, C.L.2
Collet, C.3
Xue, G.P.4
-
74
-
-
0001259453
-
The Organization and Regulation of Plant Glycolysis
-
10.1146/annurev.arplant.47.1.185, 15012287
-
Plaxton WC. The Organization and Regulation of Plant Glycolysis. Annu Rev Plant Physiol Plant Mol Biol 1996, 47:185-214. 10.1146/annurev.arplant.47.1.185, 15012287.
-
(1996)
Annu Rev Plant Physiol Plant Mol Biol
, vol.47
, pp. 185-214
-
-
Plaxton, W.C.1
-
75
-
-
2442543417
-
Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport
-
10.1016/j.pbi.2004.03.007, 15134745
-
Fernie AR, Carrari F, Sweetlove LJ. Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Curr Opin Plant Biol 2004, 7(3):254-261. 10.1016/j.pbi.2004.03.007, 15134745.
-
(2004)
Curr Opin Plant Biol
, vol.7
, Issue.3
, pp. 254-261
-
-
Fernie, A.R.1
Carrari, F.2
Sweetlove, L.J.3
-
76
-
-
34447637768
-
Structure and function of glycoglycerolipids in plants and bacteria
-
10.1016/j.plipres.2007.05.001, 17599463
-
Holzl G, Dormann P. Structure and function of glycoglycerolipids in plants and bacteria. Prog Lipid Res 2007, 46(5):225-243. 10.1016/j.plipres.2007.05.001, 17599463.
-
(2007)
Prog Lipid Res
, vol.46
, Issue.5
, pp. 225-243
-
-
Holzl, G.1
Dormann, P.2
-
77
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
78
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
10.1101/gr.9.9.868, 310812, 10508846
-
Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999, 9(9):868-877. 10.1101/gr.9.9.868, 310812, 10508846.
-
(1999)
Genome Res
, vol.9
, Issue.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
79
-
-
0032954807
-
Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
-
10.1007/PL00006502, 10198125
-
Yang YW, Lai KN, Tai PY, Li WH. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol 1999, 48(5):597-604. 10.1007/PL00006502, 10198125.
-
(1999)
J Mol Evol
, vol.48
, Issue.5
, pp. 597-604
-
-
Yang, Y.W.1
Lai, K.N.2
Tai, P.Y.3
Li, W.H.4
-
80
-
-
0035060915
-
Comparative structural genomics in the Brassicaceae family
-
Schmidt R. Comparative structural genomics in the Brassicaceae family. Plant Physiol Biochem 2001, 39(3-4):253-262.
-
(2001)
Plant Physiol Biochem
, vol.39
, Issue.3-4
, pp. 253-262
-
-
Schmidt, R.1
-
81
-
-
67049114681
-
Comparative sequence analysis for Brassica oleracea with similar sequences in B. rapa and Arabidopsis thaliana
-
10.1007/s00299-008-0661-3, 19112567
-
Qiu D, Gao M, Li G, Quiros C. Comparative sequence analysis for Brassica oleracea with similar sequences in B. rapa and Arabidopsis thaliana. Plant Cell Rep 2009, 28(4):649-661. 10.1007/s00299-008-0661-3, 19112567.
-
(2009)
Plant Cell Rep
, vol.28
, Issue.4
, pp. 649-661
-
-
Qiu, D.1
Gao, M.2
Li, G.3
Quiros, C.4
-
82
-
-
0030446480
-
Inter- and intra-genomic homology of the Brassica genomes: implications for their origin and evolution
-
10.1007/BF00223454, 24162534
-
Truco M. Inter- and intra-genomic homology of the Brassica genomes: implications for their origin and evolution. Theor Appl Genet 1996, 93(8):1225-1233. 10.1007/BF00223454, 24162534.
-
(1996)
Theor Appl Genet
, vol.93
, Issue.8
, pp. 1225-1233
-
-
Truco, M.1
-
83
-
-
71349085860
-
Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication
-
10.1186/gb-2009-10-10-r111, 2784326, 19821981
-
Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, et al. Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome Biol 2009, 10(10):R111. 10.1186/gb-2009-10-10-r111, 2784326, 19821981.
-
(2009)
Genome Biol
, vol.10
, Issue.10
-
-
Mun, J.H.1
Kwon, S.J.2
Yang, T.J.3
Seol, Y.J.4
Jin, M.5
Kim, J.A.6
Lim, M.H.7
Kim, J.S.8
Baek, S.9
Choi, B.S.10
-
84
-
-
80053342059
-
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations
-
10.1186/1471-2164-12-470, 3193055, 21955929
-
Wang X, Torres MJ, Pierce G, Lemke C, Nelson LK, Yuksel B, Bowers JE, Marler B, Xiao Y, Lin L, et al. A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. BMC Genomics 2011, 12:470. 10.1186/1471-2164-12-470, 3193055, 21955929.
-
(2011)
BMC Genomics
, vol.12
, pp. 470
-
-
Wang, X.1
Torres, M.J.2
Pierce, G.3
Lemke, C.4
Nelson, L.K.5
Yuksel, B.6
Bowers, J.E.7
Marler, B.8
Xiao, Y.9
Lin, L.10
-
85
-
-
33745467604
-
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
-
10.1105/tpc.106.041665, 1475499, 16632643
-
Town CD, Cheung F, Maiti R, Crabtree J, Haas BJ, Wortman JR, Hine EE, Althoff R, Arbogast TS, Tallon LJ, et al. Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 2006, 18(6):1348-1359. 10.1105/tpc.106.041665, 1475499, 16632643.
-
(2006)
Plant Cell
, vol.18
, Issue.6
, pp. 1348-1359
-
-
Town, C.D.1
Cheung, F.2
Maiti, R.3
Crabtree, J.4
Haas, B.J.5
Wortman, J.R.6
Hine, E.E.7
Althoff, R.8
Arbogast, T.S.9
Tallon, L.J.10
-
86
-
-
0037294791
-
Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map
-
Babula D, Kaczmarek M, Barakat A, Delseny M, Quiros CF, Sadowski J. Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map. Mol Genet Genomics 2003, 268(5):656-665.
-
(2003)
Mol Genet Genomics
, vol.268
, Issue.5
, pp. 656-665
-
-
Babula, D.1
Kaczmarek, M.2
Barakat, A.3
Delseny, M.4
Quiros, C.F.5
Sadowski, J.6
-
87
-
-
67749135652
-
Comparative analysis of the Brassica oleracea genetic map and the Arabidopsis thaliana genome
-
10.1139/G09-035, 19767893
-
Kaczmarek M, Koczyk G, Ziolkowski PA, Babula-Skowronska D, Sadowski J. Comparative analysis of the Brassica oleracea genetic map and the Arabidopsis thaliana genome. Genome 2009, 52(7):620-633. 10.1139/G09-035, 19767893.
-
(2009)
Genome
, vol.52
, Issue.7
, pp. 620-633
-
-
Kaczmarek, M.1
Koczyk, G.2
Ziolkowski, P.A.3
Babula-Skowronska, D.4
Sadowski, J.5
-
88
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
10.1093/bioinformatics/btn025, 18227114
-
Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24(5):713-714. 10.1093/bioinformatics/btn025, 18227114.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
89
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
90
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
10.1093/nar/9.1.133, 326673, 6163133
-
Zuker M, Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 1981, 9(1):133-148. 10.1093/nar/9.1.133, 326673, 6163133.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.1
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
91
-
-
83355161462
-
MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue
-
10.1186/1471-2164-12-605, 3258298, 22168751
-
Yang R, Dai Z, Chen S, Chen L. MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue. BMC Genomics 2011, 12:605. 10.1186/1471-2164-12-605, 3258298, 22168751.
-
(2011)
BMC Genomics
, vol.12
, pp. 605
-
-
Yang, R.1
Dai, Z.2
Chen, S.3
Chen, L.4
-
92
-
-
74049164557
-
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
-
10.1186/gb-2009-10-7-r78, 2728532, 19615057
-
Chen X, Li Q, Wang J, Guo X, Jiang X, Ren Z, Weng C, Sun G, Wang X, Liu Y, et al. Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 2009, 10(7):R78. 10.1186/gb-2009-10-7-r78, 2728532, 19615057.
-
(2009)
Genome Biol
, vol.10
, Issue.7
-
-
Chen, X.1
Li, Q.2
Wang, J.3
Guo, X.4
Jiang, X.5
Ren, Z.6
Weng, C.7
Sun, G.8
Wang, X.9
Liu, Y.10
-
93
-
-
84934438960
-
UNAFold: software for nucleic acid folding and hybridization
-
10.1007/978-1-60327-429-6_1, 18712296
-
Markham NR, Zuker M. UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 2008, 453:3-31. 10.1007/978-1-60327-429-6_1, 18712296.
-
(2008)
Methods Mol Biol
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
94
-
-
79953093240
-
NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome
-
Teune JH, Steger G. NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome. J Nucleic Acids 2010, 2010(2010):1-10.
-
(2010)
J Nucleic Acids
, vol.2010
, Issue.2010
, pp. 1-10
-
-
Teune, J.H.1
Steger, G.2
-
95
-
-
84874465120
-
HuntMi: an efficient and taxon-specific approach in pre-miRNA identification
-
Gudys A, Szczesniak MW, Sikora M, Makalowska I. HuntMi: an efficient and taxon-specific approach in pre-miRNA identification. BMC Bioinforma 2013, 14:83.
-
(2013)
BMC Bioinforma
, vol.14
, pp. 83
-
-
Gudys, A.1
Szczesniak, M.W.2
Sikora, M.3
Makalowska, I.4
-
96
-
-
60149090481
-
Criteria for annotation of plant MicroRNAs
-
10.1105/tpc.108.064311, 2630443, 19074682
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, et al. Criteria for annotation of plant MicroRNAs. Plant Cell 2008, 20(12):3186-3190. 10.1105/tpc.108.064311, 2630443, 19074682.
-
(2008)
Plant Cell
, vol.20
, Issue.12
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
Bowman, J.L.6
Cao, X.7
Carrington, J.C.8
Chen, X.9
Green, P.J.10
-
97
-
-
77449084674
-
Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila
-
10.1038/nsmb.1735, 2919300, 20037596
-
Marques JT, Kim K, Wu PH, Alleyne TM, Jafari N, Carthew RW. Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila. Nat Struct Mol Biol 2010, 17(1):24-30. 10.1038/nsmb.1735, 2919300, 20037596.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.1
, pp. 24-30
-
-
Marques, J.T.1
Kim, K.2
Wu, P.H.3
Alleyne, T.M.4
Jafari, N.5
Carthew, R.W.6
-
98
-
-
84865121074
-
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets
-
10.1093/bioinformatics/bts311, 3400958, 22628521
-
Stocks MB, Moxon S, Mapleson D, Woolfenden HC, Mohorianu I, Folkes L, Schwach F, Dalmay T, Moulton V. The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics 2012, 28(15):2059-2061. 10.1093/bioinformatics/bts311, 3400958, 22628521.
-
(2012)
Bioinformatics
, vol.28
, Issue.15
, pp. 2059-2061
-
-
Stocks, M.B.1
Moxon, S.2
Mapleson, D.3
Woolfenden, H.C.4
Mohorianu, I.5
Folkes, L.6
Schwach, F.7
Dalmay, T.8
Moulton, V.9
-
99
-
-
33847652140
-
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis
-
10.1073/pnas.0611119104, 1805617, 17360645
-
Chen HM, Li YH, Wu SH. Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci U S A 2007, 104(9):3318-3323. 10.1073/pnas.0611119104, 1805617, 17360645.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.9
, pp. 3318-3323
-
-
Chen, H.M.1
Li, Y.H.2
Wu, S.H.3
-
100
-
-
0842321501
-
MicroRNA targets in Drosophila
-
10.1186/gb-2003-5-1-r1, 395733, 14709173
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS. MicroRNA targets in Drosophila. Genome Biol 2003, 5(1):R1. 10.1186/gb-2003-5-1-r1, 395733, 14709173.
-
(2003)
Genome Biol
, vol.5
, Issue.1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
101
-
-
47049099111
-
Ontologizer 2.0-a multifunctional tool for GO term enrichment analysis and data exploration
-
10.1093/bioinformatics/btn250, 18511468
-
Bauer S, Grossmann S, Vingron M, Robinson PN. Ontologizer 2.0-a multifunctional tool for GO term enrichment analysis and data exploration. Bioinformatics 2008, 24(14):1650-1651. 10.1093/bioinformatics/btn250, 18511468.
-
(2008)
Bioinformatics
, vol.24
, Issue.14
, pp. 1650-1651
-
-
Bauer, S.1
Grossmann, S.2
Vingron, M.3
Robinson, P.N.4
|