메뉴 건너뛰기




Volumn 28, Issue 4, 2009, Pages 649-661

Comparative sequence analysis for Brassica oleracea with similar sequences in B. rapa and Arabidopsis thaliana

Author keywords

Comparative genomics; Gene mapping; Glucosinolates; Synteny; Transposable elements

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA; BRASSICA OLERACEA; BRASSICA OLERACEA VAR. CAPITATA; BRASSICA OLERACEA VAR. ITALICA; BRASSICA RAPA;

EID: 67049114681     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-008-0661-3     Document Type: Article
Times cited : (27)

References (32)
  • 1
    • 12344307632 scopus 로고    scopus 로고
    • The diversity of retroelements in diploid and allotetraploid Brassica species
    • DOI 10.1007/s11103-004-0391-z
    • K Alix JS Heslop-Harrison 2004 The diversity of retroelements in diploid and allotetraploid Brassica species Plant Mol Biol 54 895 909 (Pubitemid 40134255)
    • (2004) Plant Molecular Biology , vol.54 , Issue.6 , pp. 895-909
    • Alix, K.1    Heslop-Harrison, J.S.2
  • 4
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • DOI 10.1105/tpc.12.7.1093
    • G Blanc A Barakat R Guyot R Cooke M Delseny 2000 Extensive duplication and reshuffling in the Arabidopsis genome Plant Cell 12 1093 1101 (Pubitemid 30622714)
    • (2000) Plant Cell , vol.12 , Issue.7 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 5
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • DOI 10.1006/jmbi.1997.0951
    • C Burge S Karlin 1997 Prediction of complete gene structures in human genomic DNA J Mol Biol 268 78 94 (Pubitemid 27192680)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 6
    • 0037264654 scopus 로고    scopus 로고
    • Leveraging the mouse genome for gene prediction in human: From whole-genome shotgun reads to a global synteny map
    • P Flicek E Keibler P Hu I Korf MR Brent 2003 Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map Genome Res 13 46 54
    • (2003) Genome Res , vol.13 , pp. 46-54
    • Flicek, P.1    Keibler, E.2    Hu, P.3    Korf, I.4    Brent, M.R.5
  • 7
    • 5144221911 scopus 로고    scopus 로고
    • Comparative analysis of a Brassica BAC clone containing several major aliphatic glucosinolate genes with its corresponding Arabidopsis sequence
    • DOI 10.1139/G04-021
    • M Gao G Li B Yang WR McCombie CF Quiros 2004 Comparative analysis of a Brassica BAC clone containing several major aliphatic glucosinolate genes with its corresponding Arabidopsis sequence Genome 47 666 679 (Pubitemid 39342534)
    • (2004) Genome , vol.47 , Issue.4 , pp. 666-679
    • Gao, M.1    Li, G.2    Yang, B.3    McCombie, W.R.4    Quiros, C.F.5
  • 8
    • 26944435538 scopus 로고    scopus 로고
    • Comparative analysis of a transposon-rich Brassica oleracea BAC clone with its corresponding sequence in A. thaliana
    • DOI 10.1007/s00122-005-0029-9
    • M Gao G Li WR McCombie CF Quiros 2005 Comparative analysis of a transposon-rich Brassica oleracea BAC clone with its corresponding sequence in A. thaliana Theor Appl Genet 111 949 955 (Pubitemid 41473392)
    • (2005) Theoretical and Applied Genetics , vol.111 , Issue.5 , pp. 949-955
    • Gao, M.1    Li, G.2    McCombie, W.R.3    Quiros, C.F.4
  • 9
    • 33646891529 scopus 로고    scopus 로고
    • Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and Arabidopsis thaliana
    • DOI 10.1007/s00299-005-0078-1
    • M Gao G Li D Potter WR McCombie CF Quiros 2006 Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and A. thaliana Plant Cell Rep 25 592 598 (Pubitemid 43787388)
    • (2006) Plant Cell Reports , vol.25 , Issue.6 , pp. 592-598
    • Gao, M.1    Li, G.2    Potter, D.3    McCombie, W.R.4    Quiros, C.F.5
  • 10
    • 33745004593 scopus 로고    scopus 로고
    • History, protohistory and prehistory of the Arabidopsis thaliana chromosome complement
    • DOI 10.1016/j.tplants.2006.04.002, PII S1360138506001014
    • Y Henry M Bedhomme G Blanc 2006 History, protohistory and prehistory of the Arabidopsis thaliana chromosome complement Trends Plant Sci 11 267 273 (Pubitemid 43867397)
    • (2006) Trends in Plant Science , vol.11 , Issue.6 , pp. 267-273
    • Henry, Y.1    Bedhomme, M.2    Blanc, G.3
  • 13
    • 17844400289 scopus 로고    scopus 로고
    • Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana
    • DOI 10.1101/gr.3239105
    • MS Katari V Balija RK Eilson RA Martienssen WR McCombie 2005 Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza stiva genome sequence for their ability to add to the annotation of Arabidopsis thaliana Genome Res 15 496 504 (Pubitemid 41057813)
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 496-504
    • Katari, M.S.1    Balija, V.2    Wilson, R.K.3    Martienssen, R.A.4    McCombie, W.R.5
  • 14
    • 0027994623 scopus 로고
    • Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization
    • SP Kowalski TH Lan KA Feldmann AH Paterson 1994 Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization Genetics 138 499 510 (Pubitemid 24299292)
    • (1994) Genetics , vol.138 , Issue.2 , pp. 499-510
    • Kowalski, S.P.1    Lan, T.-H.2    Feldmann, K.A.3    Paterson, A.H.4
  • 15
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • U Lagercrantz 1998 Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements Genetics 150 1217 1228 (Pubitemid 28510049)
    • (1998) Genetics , vol.150 , Issue.3 , pp. 1217-1228
    • Lagercrantz, U.1
  • 18
    • 17844379449 scopus 로고    scopus 로고
    • Chromosome triplication found across the tribe Brassiceae
    • DOI 10.1101/gr.3531105
    • MA Lysak MA Koch A Pecinka I Schubert 2005 Chromosome triplication found across the tribe Brassiceae Genome Res 15 516 525 (Pubitemid 41065010)
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 516-525
    • Lysak, M.A.1    Koch, M.A.2    Pecinka, A.3    Schubert, I.4
  • 19
    • 0033893554 scopus 로고    scopus 로고
    • Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana
    • DOI 10.1046/j.1365-313X.2000.00781.x
    • CM O'Neill I Bancroft 2000 Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana Plant J 23 233 243 (Pubitemid 30597283)
    • (2000) Plant Journal , vol.23 , Issue.2 , pp. 233-243
    • O'Neill, C.M.1    Bancroft, I.2
  • 21
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    • DOI 10.1534/genetics.105.042093
    • IAP Parkin SM Gulden AG Sharpe L Lukens M Trick TC Osborn DJ Lydiate 2005 Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana Genetics 171 765 781 (Pubitemid 43158406)
    • (2005) Genetics , vol.171 , Issue.2 , pp. 765-781
    • Parkin, I.A.P.1    Gulden, S.M.2    Sharpe, A.G.3    Lukens, L.4    Trick, M.5    Osborn, T.C.6    Lydiate, D.J.7
  • 24
    • 33751014556 scopus 로고    scopus 로고
    • The ABC's of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes
    • EM Schranz MA Lysak T Mitchell-Olds 2006 The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes Trends Plant Sci 11 1360 1385
    • (2006) Trends Plant Sci , vol.11 , pp. 1360-1385
    • Schranz, E.M.1    Lysak, M.A.2    Mitchell-Olds, T.3
  • 25
    • 0000760162 scopus 로고
    • Cytogenetics of Brassica hybrids and species
    • SM Sikka 1940 Cytogenetics of Brassica hybrids and species J Genet 40 441 509
    • (1940) J Genet , vol.40 , pp. 441-509
    • Sikka, S.M.1
  • 27
    • 0002427832 scopus 로고
    • Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae)-chloroplast genome and cytodeme congruence
    • SI Warwick LD Black 1991 Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae)-chloroplast genome and cytodeme congruence Theor Appl Genet 82 81 92
    • (1991) Theor Appl Genet , vol.82 , pp. 81-92
    • Warwick, S.I.1    Black, L.D.2
  • 28
    • 0033780367 scopus 로고    scopus 로고
    • Variation and phylogenetic utility of the Arabidopsis thaliana Rps2 homolog in various species of the tribe Brassiceae
    • DOI 10.1006/mpev.2000.0781
    • T Wroblewski S Coulibaly J Sadowski CF Quiros 2000 Variation and phylogenetic utility of the Arabidopsis thaliana Rps2 homolog in various species of the tribe Brassiceae Mol Phylogenet Evol 16 440 448 (Pubitemid 30766558)
    • (2000) Molecular Phylogenetics and Evolution , vol.16 , Issue.3 , pp. 440-448
    • Wroblewski, T.1    Coulibaly, S.2    Sadowski, J.3    Quiros, C.F.4
  • 29
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and the other angiosperm lineages
    • YW Yang KN Lai PY Tai WH Li 1999 Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and the other angiosperm lineages J Mol Evol 48 597 604
    • (1999) J Mol Evol , vol.48 , pp. 597-604
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Li, W.H.4
  • 31
    • 1842681942 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
    • X Zhang S Wessler 2004 Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea PNAS 101 5585 5594
    • (2004) PNAS , vol.101 , pp. 5585-5594
    • Zhang, X.1    Wessler, S.2
  • 32
    • 33745069304 scopus 로고    scopus 로고
    • Genome evolution in Arabidopsis/Brassica: Conservation and divergence of ancient rearranged segments and their breakpoints
    • DOI 10.1111/j.1365-313X.2006.02762.x
    • PA Ziolkowski M Kaczmarek D Babula J Sadowski 2006 Genome evolution in Arabidopsis/Brassica: conservation and divergence of ancient rearranged segments and their breakpoints Plant J 47 63 74 (Pubitemid 43883014)
    • (2006) Plant Journal , vol.47 , Issue.1 , pp. 63-74
    • Ziolkowski, P.A.1    Kaczmarek, M.2    Babula, D.3    Sadowski, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.