-
1
-
-
0035503921
-
The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
-
Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB (2001) The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res 29: 4319-4333
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4319-4333
-
-
Baumbusch, L.O.1
Thorstensen, T.2
Krauss, V.3
Fischer, A.4
Naumann, K.5
Assalkhou, R.6
Schulz, I.7
Reuter, G.8
Aalen, R.B.9
-
3
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
4
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, et al (2011) Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet 43: 956-963
-
(2011)
Nat Genet
, vol.43
, pp. 956-963
-
-
Cao, J.1
Schneeberger, K.2
Ossowski, S.3
Günther, T.4
Bender, S.5
Fitz, J.6
Koenig, D.7
Lanz, C.8
Stegle, O.9
Lippert, C.10
-
5
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
6
-
-
0032447801
-
Floral dip: A simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
8
-
-
77955418697
-
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
-
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC (2010) Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol 17: 997-1003
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 997-1003
-
-
Cuperus, J.T.1
Carbonell, A.2
Fahlgren, N.3
Garcia-Ruiz, H.4
Burke, R.T.5
Takeda, A.6
Sullivan, C.M.7
Gilbert, S.D.8
Montgomery, T.A.9
Carrington, J.C.10
-
9
-
-
70449127022
-
Hierarchical rules for Argonaute loading in Drosophila
-
Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ (2009) Hierarchical rules for Argonaute loading in Drosophila. Mol Cell 36: 445-456
-
(2009)
Mol Cell
, vol.36
, pp. 445-456
-
-
Czech, B.1
Zhou, R.2
Erlich, Y.3
Brennecke, J.4
Binari, R.5
Villalta, C.6
Gordon, A.7
Perrimon, N.8
Hannon, G.J.9
-
10
-
-
79961204641
-
Stars and symbiosis: MicroRNA-and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
-
Devers EA, Branscheid A, May P, Krajinski F (2011) Stars and symbiosis: microRNA-and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol 156: 1990-2010
-
(2011)
Plant Physiol
, vol.156
, pp. 1990-2010
-
-
Devers, E.A.1
Branscheid, A.2
May, P.3
Krajinski, F.4
-
11
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
Ebbs ML, Bender J (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176
-
(2006)
Plant Cell
, vol.18
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
12
-
-
30944463788
-
Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis
-
Fischer A, Hofmann I, Naumann K, Reuter G (2006) Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis. J Plant Physiol 163: 358-368
-
(2006)
J Plant Physiol
, vol.163
, pp. 358-368
-
-
Fischer, A.1
Hofmann, I.2
Naumann, K.3
Reuter, G.4
-
13
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, García JA, Paz-Ares J (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39: 1033-1037
-
(2007)
Nat Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
García, J.A.9
Paz-Ares, J.10
-
14
-
-
77954296666
-
A new bioinformatics analysis tools framework at EMBL-EBI
-
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R (2010) A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res 38: W695-W699
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Goujon, M.1
McWilliam, H.2
Li, W.3
Valentin, F.4
Squizzato, S.5
Paern, J.6
Lopez, R.7
-
15
-
-
33644750115
-
miRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34: D140-D144
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
16
-
-
0342803566
-
pGreen: A versatile and flexible binary Ti vector for Agrobacteriummediated plant transformation
-
Hellens RP, Edwards EA, Leyland NR, Bean S, Mullineaux PM (2000) pGreen: a versatile and flexible binary Ti vector for Agrobacteriummediated plant transformation. Plant Mol Biol 42: 819-832
-
(2000)
Plant Mol Biol
, vol.42
, pp. 819-832
-
-
Hellens, R.P.1
Edwards, E.A.2
Leyland, N.R.3
Bean, S.4
Mullineaux, P.M.5
-
17
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
18
-
-
79958047255
-
Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis
-
Jay F, Wang Y, Yu A, Taconnat L, Pelletier S, Colot V, Renou JP, Voinnet O (2011) Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathog 7: e1002035
-
(2011)
PLoS Pathog
, vol.7
-
-
Jay, F.1
Wang, Y.2
Yu, A.3
Taconnat, L.4
Pelletier, S.5
Colot, V.6
Renou, J.P.7
Voinnet, O.8
-
19
-
-
60849084449
-
Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer
-
Jazdzewski K, Liyanarachchi S, Swierniak M, Pachucki J, Ringel MD, Jarzab B, de la Chapelle A (2009) Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer. Proc Natl Acad Sci USA 106: 1502-1505
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1502-1505
-
-
Jazdzewski, K.1
Liyanarachchi, S.2
Swierniak, M.3
Pachucki, J.4
Ringel, M.D.5
Jarzab, B.6
De la Chapelle, A.7
-
20
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
21
-
-
79960004119
-
Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: W475-W478
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
22
-
-
0037144457
-
Cleavage of Scarecrowlike mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, Carrington JC (2002) Cleavage of Scarecrowlike mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
23
-
-
33748610793
-
Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor
-
Manavella PA, Arce AL, Dezar CA, Bitton F, Renou JP, Crespi M, Chan RL (2006) Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor. Plant J 48: 125-137
-
(2006)
Plant J
, vol.48
, pp. 125-137
-
-
Manavella, P.A.1
Arce, A.L.2
Dezar, C.A.3
Bitton, F.4
Renou, J.P.5
Crespi, M.6
Chan, R.L.7
-
24
-
-
84857136650
-
Plant secondary siRNA production determined by microRNA-duplex structure
-
Manavella PA, Koenig D, Weigel D (2012) Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci USA 109: 2461-2466
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 2461-2466
-
-
Manavella, P.A.1
Koenig, D.2
Weigel, D.3
-
25
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, et al (2008) Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide. Cell 133: 116-127
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
-
26
-
-
41149158475
-
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
-
Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC (2008) Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell 133: 128-141
-
(2008)
Cell
, vol.133
, pp. 128-141
-
-
Montgomery, T.A.1
Howell, M.D.2
Cuperus, J.T.3
Li, D.4
Hansen, J.E.5
Alexander, A.L.6
Chapman, E.J.7
Fahlgren, N.8
Allen, E.9
Carrington, J.C.10
-
27
-
-
36148954289
-
Improved Gateway binary vectors: High-performance vectors for creation of fusion constructs in transgenic analysis of plants
-
Nakagawa T, Suzuki T, Murata S, Nakamura S, Hino T, Maeo K, Tabata R, Kawai T, Tanaka K, Niwa Y, et al (2007) Improved Gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci Biotechnol Biochem 71: 2095-2100
-
(2007)
Biosci Biotechnol Biochem
, vol.71
, pp. 2095-2100
-
-
Nakagawa, T.1
Suzuki, T.2
Murata, S.3
Nakamura, S.4
Hino, T.5
Maeo, K.6
Tabata, R.7
Kawai, T.8
Tanaka, K.9
Niwa, Y.10
-
28
-
-
17844387167
-
Pivotal role of At-SUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis
-
Naumann K, Fischer A, Hofmann I, Krauss V, Phalke S, Irmler K, Hause G, Aurich AC, Dorn R, Jenuwein T, et al (2005) Pivotal role of At-SUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J 24: 1418-1429
-
(2005)
EMBO J
, vol.24
, pp. 1418-1429
-
-
Naumann, K.1
Fischer, A.2
Hofmann, I.3
Krauss, V.4
Phalke, S.5
Irmler, K.6
Hause, G.7
Aurich, A.C.8
Dorn, R.9
Jenuwein, T.10
-
29
-
-
41649089309
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 39 UTR evolution
-
Okamura K, PhillipsMD, Tyler DM, Duan H, Chou YT, Lai EC (2008) The regulatory activity of microRNA* species has substantial influence on microRNA and 39 UTR evolution. Nat Struct Mol Biol 15: 354-363
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.T.5
Lai, E.C.6
-
30
-
-
38949151063
-
Gene silencing in plants using artificial microRNAs and other small RNAs
-
Ossowski S, Schwab R, Weigel D (2008) Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J 53: 674-690
-
(2008)
Plant J
, vol.53
, pp. 674-690
-
-
Ossowski, S.1
Schwab, R.2
Weigel, D.3
-
31
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425: 257-263
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
Weigel, D.7
-
32
-
-
67650156804
-
Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
-
Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR (2009) Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 150: 1541-1555
-
(2009)
Plant Physiol
, vol.150
, pp. 1541-1555
-
-
Pant, B.D.1
Musialak-Lange, M.2
Nuc, P.3
May, P.4
Buhtz, A.5
Kehr, J.6
Walther, D.7
Scheible, W.R.8
-
33
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
34
-
-
73449126830
-
RNA secondary structural determinants of miRNA precursor processing in Arabidopsis
-
Song L, Axtell MJ, Fedoroff NV (2010) RNA secondary structural determinants of miRNA precursor processing in Arabidopsis. Curr Biol 20: 37-41
-
(2010)
Curr Biol
, vol.20
, pp. 37-41
-
-
Song, L.1
Axtell, M.J.2
Fedoroff, N.V.3
-
35
-
-
77957328824
-
A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana
-
Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D (2010) A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet 6: e1001031
-
(2010)
PLoS Genet
, vol.6
-
-
Todesco, M.1
Rubio-Somoza, I.2
Paz-Ares, J.3
Weigel, D.4
-
36
-
-
84862176128
-
TarBase 6.0: Capturing the exponential growth of miRNA targets with experimental support
-
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG (2012) TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res 40: D222-D229
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Vergoulis, T.1
Vlachos, I.S.2
Alexiou, P.3
Georgakilas, G.4
Maragkakis, M.5
Reczko, M.6
Gerangelos, S.7
Koziris, N.8
Dalamagas, T.9
Hatzigeorgiou, A.G.10
-
37
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
38
-
-
79960226204
-
Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions
-
Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ (2011) Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. Plant J 67: 292-304
-
(2011)
Plant J
, vol.67
, pp. 292-304
-
-
Wang, H.1
Zhang, X.2
Liu, J.3
Kiba, T.4
Woo, J.5
Ojo, T.6
Hafner, M.7
Tuschl, T.8
Chua, N.H.9
Wang, X.J.10
-
39
-
-
79955499404
-
Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(*)-mediated silencing of a Golgi-localized SNARE gene, MEMB12
-
Zhang X, Zhao H, Gao S, Wang WC, Katiyar-Agarwal S, Huang HD, Raikhel N, Jin H (2011) Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(*)-mediated silencing of a Golgi-localized SNARE gene, MEMB12. Mol Cell 42: 356-366
-
(2011)
Mol Cell
, vol.42
, pp. 356-366
-
-
Zhang, X.1
Zhao, H.2
Gao, S.3
Wang, W.C.4
Katiyar-Agarwal, S.5
Huang, H.D.6
Raikhel, N.7
Jin, H.8
-
40
-
-
79953857473
-
Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
-
Zhu H, Hu F, Wang R, Zhou X, Sze SH, Liou LW, Barefoot A, Dickman M, Zhang X (2011) Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 145: 242-256
-
(2011)
Cell
, vol.145
, pp. 242-256
-
-
Zhu, H.1
Hu, F.2
Wang, R.3
Zhou, X.4
Sze, S.H.5
Liou, L.W.6
Barefoot, A.7
Dickman, M.8
Zhang, X.9
|