Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: Complexity of the comparative map

Molecular Genetics and Genomics

Volumn 268, Issue 5, 2003, Pages 656-665

  Babula, D ^a   Kaczmarek, M ^a   Barakat, A ^b   Delseny, M ^b   Quiros, C F ^c   Sadowski, J ^a,d  

^a INSTITUTE OF PLANT GENETICS   (Poland)

^b UNIVERSITÉ DE PERPIGNAN   (France)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d ADAM MICKIEWICZ UNIVERSITY   (Poland)

Author keywords

Arabidopsis thaliana; Brassica oleracea; Chromosomal colinearity; Expressed sequence tags (ESTs); Linkage map

Indexed keywords

ARABIDOPSIS; ARTICLE; CABBAGE; CHROMOSOME DUPLICATION; CHROMOSOME MAP; CHROMOSOME STRUCTURE; COMPARATIVE STUDY; EXPERIMENTAL TEST; EXPRESSED SEQUENCE TAG; GENE CONSTRUCT; GENE LOCUS; GENE PROBE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA; BRASSICA OLERACEA; BRASSICA OLERACEA VAR. CAPITATA; EMBRYOPHYTA;

EID: 0037294791     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-002-0782-2     Document Type: Article

References (41)

1. Arondel V, Lemieux B, Hwang T, Gibson S, Goodman HM, Somerville CR (1992) Map-based cloning of a gene controlling omega-3 fatty acid desaturation in Arabidopsis. Science 258:1353-1355
2. Arumuganathan K and Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Rep 9:208-219
3. Babula D, Kaczmarek M, Delseny M, Quiros CF, Sadowski J (2000) Construction of a genetic map for Brassica oleracea based on ESTs from the Arabidopsis thaliana genome. Acta Hort 539:95-99
4. Blanc G, Barakat A, Guyot R, Cooke R, Delseny M (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12:1523-1540
5. Cavell A, Lydiate D, Parkin I, Dean C, Trick M (1998) Colinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome. Genome 41:62-69
6. Conner JA, Conner P, Nashrallah ME, Nashrallah JB (1998) Comparative mapping of the Brassica S locus region and its homeolog in Arabidopsis: implications for the evolution of mating systems in the Brassicaceae. Plant Cell 10:801-812
7. Delseny M, Barakat A, Sadowski J, Grellet F, Cooke R (2001) The Arabidopsis genome: a model for analysis of crop plant genomes and their diversity, In: (ed) Evolutionary genetics and plant genetic resources Harwood Academic Publishers, in press
8. Emanuel J (1991) Simple and efficient system for the synthesis of non-radioactive nucleic acid hybridization probes using PCR. Nucleic Acids Res 19:2790
9. Gale MD, Devos KM (1998) Plant comparative genetics after 10 years. Science 282:656-658
10. Gaut BS (2001) Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res 11:55-66
11. Grant D, Cregan P, Shoemaker RC (2000) Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc Natl Acad Sci USA 97:4168-4173
12. Hu J, Sadowski J, Osborn TC, Landry BS, Quiros CF (1998) Linkage group alignement from four independent Brassica oleracea RFLP maps. Genome 41:226-235
13. Kianian SF, Quiros CF (1992) Generation of a Brassica oleracea composite RFLP map: linkage arrangements among various populations and evolutionary implications. Theor Appl Genet 84:544-554
14. Kowalski SP, Lan TH, Feldman KA, Paterson AH (1994) Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization. Genetics 138:499-510
15. Ku HM, Vision T, Liu J, Tanksley SD (2000) Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci USA 97:9121-9126
16. Lagercrantz U (1998) Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150:1217-1228
17. Lagercrantz U, Lydiate D (1996) Comparative genome mapping in Brassica. Genetics 144:1903-1910
18. Lan TH, DelMonte TA, Reischmann KP, Hyman J, Kowalski SP, McFerson J, Kresovich S, Paterson AH (2000) An EST-enriched comparative map of Brassica oleracea and Arabidopsis thaliana. Genome Res 10:776-788
19. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
20. O'Neill CM, Bancroft I (2000) Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana. Plant J 23:233-243
21. Osborn TD, Kole C, Parkin IA, Sharpe AG, Kuiper M (1997) Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. Genetics 146:1123-1129
22. Parkin IAP, Lydiate DJ, Trick M (2002) Assessing the level of collinearity between Arabidopsis thaliana and Brassica napus for A. thaliana chromosome 5. Genome 45:356-366
23. Pastuglia M, Ruffio-Chable V, Delorme V, Gaude T, Dumas C (1997) A functional S locus anther gene is not required for the self-incompatibility response in Brassica oleracea. Plant Cell 9:2065-2076
24. Paterson AH, Bowers JE, Burow MD, Draye X, Elsik CG, Jiang CX, Katsar CS, Lan TH, Lin YR, Ming R, Wright RJ (2000) Comparative genomics of plant chromosomes. Plant Cell 12:1523-1540
25. Pearson WR (1990) Rapid and sensitive sequence comparison with FASTAP and EASTA. Methods Enzymol 183:63-98
26. Perez F, Quiros CF (1999) Genomic structural differentiation in Solanum: comparative mapping of the A- and E- genomes. Theor Appl Genet 98:1183-1193
27. Quiros CF, Grellet F, Sadowski J, Suzuki T, Li G, Wroblewski T (2001) Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions. Genetics 157:1321-1330
28. Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T (2001) Comparative sequence analysis reveals extensive microcolinearity in the Lateral suppressor regions of the tomato, Arabidopsis and Capsella genomes. Plant Cell 13:979-988
29. Rubin GM, et al. (2000) Comparative genomics of the eucaryotes. Science 287:2204-2215
30. Ryder CD, Smith LB, Teakle GR, King GJ (2001) Contrasting genome organisation: two regions of the Brassica oleracea genome compared with collinear regions of the Arabidopsis thaliana genome. Genome 44:808-817
31. Sadowski J, Quiros CF (1998) Organization of an Arabidopsis thaliana gene cluster on chromosome 4 including the RPS2gene, in the Brassica nigra genome. Theor Appl Genet 96:468-474
32. Sadowski J, Gaubier P, Delseny M, Quiros CF (1996) Genetic and physical mapping in Brassica diploids of a gene cluster defined in Arabidopsis thaliana. Mol Gen Genet 251:298-306
33. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
34. Schmidt R (2000) Synteny: recent advances and future prospects. Curr Opin Plant Biol 3:97-102
35. Schoen DJ (2000) Comparative genomics, marker density and statistical analysis of chromosome rearrangements. Genetics 154:943-952
36. Song K, Lu P, Tang K, Osborn TC (1995) Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 92:7719-7723
37. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
38. Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z (1999) Colinearity and its exceptions in orthologous adh regions of maize and sorgum. Proc Natl Acad Sci USA 96:7409-7414
39. Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290:2114-2117
40. Waddington D, Springbett AJ, Burt DW (2000) A chromosome-based model for estimating the number of conserved segments between pairs of species from comparative genetic maps. Genetics 154:323-332
41. Ziolkowski PA, Sadowski J (2002) FISH-mapping of rDNAs and Arabidopsis BACs on pachytene complements of selected Brassicas. Genome 45:189-197