메뉴 건너뛰기




Volumn 501, Issue 1, 2012, Pages 24-32

Identification and characterization of miRNAome in tobacco (Nicotiana tabacum) by deep sequencing combined with microarray

Author keywords

Deep sequencing; Microarray; MiRNA; Tissue specificity; Tobacco; Topping

Indexed keywords

COMPLEMENTARY DNA; MICRORNA; RIBOSOME RNA; SMALL NUCLEOLAR RNA; TRANSFER RNA;

EID: 84860565375     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.04.002     Document Type: Article
Times cited : (17)

References (34)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 2
    • 43449118038 scopus 로고    scopus 로고
    • Evolution of plant microRNAs and their targets
    • Axtell M.J., Bowman J.L. Evolution of plant microRNAs and their targets. Trends Plant Sci. 2008, 13:343-349.
    • (2008) Trends Plant Sci. , vol.13 , pp. 343-349
    • Axtell, M.J.1    Bowman, J.L.2
  • 3
    • 7044285911 scopus 로고    scopus 로고
    • Probing microRNAs with microarrays: tissue specificity and functional inference
    • Babak T., Zhang W., Morris Q., Blencowe B.J., Hughes T.R. Probing microRNAs with microarrays: tissue specificity and functional inference. RNA 2004, 10:1813-1819.
    • (2004) RNA , vol.10 , pp. 1813-1819
    • Babak, T.1    Zhang, W.2    Morris, Q.3    Blencowe, B.J.4    Hughes, T.R.5
  • 4
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 24744467800 scopus 로고    scopus 로고
    • Identification of new small non-coding RNAs from tobacco and Arabidopsis
    • Billoud B., De Paepe R., Baulcombe D., Boccara M. Identification of new small non-coding RNAs from tobacco and Arabidopsis. Biochimie 2005, 87:905-910.
    • (2005) Biochimie , vol.87 , pp. 905-910
    • Billoud, B.1    De Paepe, R.2    Baulcombe, D.3    Boccara, M.4
  • 6
    • 34248572741 scopus 로고    scopus 로고
    • Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex
    • Chitwood D.H., Guo M., Nogueira F.T., Timmermans M.C. Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex. Development 2007, 134:813-823.
    • (2007) Development , vol.134 , pp. 813-823
    • Chitwood, D.H.1    Guo, M.2    Nogueira, F.T.3    Timmermans, M.C.4
  • 7
    • 60149086835 scopus 로고    scopus 로고
    • Effects of top excision on the potassium accumulation and expression of potassium channel genes in tobacco
    • Dai X.Y., Su Y.R., Wei W.X., Wu J.S., Fan Y.K. Effects of top excision on the potassium accumulation and expression of potassium channel genes in tobacco. J. Exp. Bot. 2009, 60:279-289.
    • (2009) J. Exp. Bot. , vol.60 , pp. 279-289
    • Dai, X.Y.1    Su, Y.R.2    Wei, W.X.3    Wu, J.S.4    Fan, Y.K.5
  • 9
    • 78650304023 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum)
    • Frazier T.P., Xie F., Freistaedter A., Burklew C.E., Zhang B. Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum). Planta 2010, 232:1289-1308.
    • (2010) Planta , vol.232 , pp. 1289-1308
    • Frazier, T.P.1    Xie, F.2    Freistaedter, A.3    Burklew, C.E.4    Zhang, B.5
  • 10
    • 83355168960 scopus 로고    scopus 로고
    • Differential expression of miRNAs in response to topping in flue-cured tobacco (Nicotiana tabacum) roots
    • Guo H., Kan Y., Liu W. Differential expression of miRNAs in response to topping in flue-cured tobacco (Nicotiana tabacum) roots. PLoS One 2011, 6:e28565.
    • (2011) PLoS One , vol.6
    • Guo, H.1    Kan, Y.2    Liu, W.3
  • 11
    • 0033082954 scopus 로고    scopus 로고
    • Leaf gas exchange and chlorophyll fluorescence in relation to leaf angle, azimuth, and canopy position in the tropical pioneer tree, Macaranga conifera
    • Ishida A., Toma T., M, M. Leaf gas exchange and chlorophyll fluorescence in relation to leaf angle, azimuth, and canopy position in the tropical pioneer tree, Macaranga conifera. Tree Physiol. 1999, 19:117-124.
    • (1999) Tree Physiol. , vol.19 , pp. 117-124
    • Ishida, A.1    Toma, T.2    M, M.3
  • 12
    • 0033198927 scopus 로고    scopus 로고
    • Interactive effects of leaf age and self-shading on leaf structure, photosynthetic capacity and chlorophyll fluorescence in the rain forest tree, Dryobalanops aromatica
    • Ishida A., Uemura A., Koike N., Matsumoto Y., Hoe A.L. Interactive effects of leaf age and self-shading on leaf structure, photosynthetic capacity and chlorophyll fluorescence in the rain forest tree, Dryobalanops aromatica. Tree Physiol. 1999, 19:741-747.
    • (1999) Tree Physiol. , vol.19 , pp. 741-747
    • Ishida, A.1    Uemura, A.2    Koike, N.3    Matsumoto, Y.4    Hoe, A.L.5
  • 13
    • 35248876168 scopus 로고    scopus 로고
    • Direct creation of marker-free tobacco plants from agroinfiltrated leaf discs
    • Jia H., Liao M., Verbelen J.P., Vissenberg K. Direct creation of marker-free tobacco plants from agroinfiltrated leaf discs. Plant Cell Rep. 2007, 26:1961-1965.
    • (2007) Plant Cell Rep. , vol.26 , pp. 1961-1965
    • Jia, H.1    Liao, M.2    Verbelen, J.P.3    Vissenberg, K.4
  • 14
    • 0034764839 scopus 로고    scopus 로고
    • Effect of top excision and replacement by 1-naphthylacetic acid on partition and flow of potassium in tobacco plants
    • Jiang F., Li C., Jeschke W.D., Zhang F. Effect of top excision and replacement by 1-naphthylacetic acid on partition and flow of potassium in tobacco plants. J. Exp. Bot. 2001, 52:2143-2150.
    • (2001) J. Exp. Bot. , vol.52 , pp. 2143-2150
    • Jiang, F.1    Li, C.2    Jeschke, W.D.3    Zhang, F.4
  • 15
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades M.W., Bartel D.P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 2004, 14:787-799.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 16
    • 36048989906 scopus 로고    scopus 로고
    • Expression of bacterial genes in transgenic tobacco: methods, applications and future prospects
    • Jube S., Borthakur D. Expression of bacterial genes in transgenic tobacco: methods, applications and future prospects. Electron. J. Biotechnol. 2007, 10:452-467.
    • (2007) Electron. J. Biotechnol. , vol.10 , pp. 452-467
    • Jube, S.1    Borthakur, D.2
  • 17
    • 79951575720 scopus 로고    scopus 로고
    • Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X
    • Lang Q., Jin C., Lai L., Feng J., Chen S., Chen J. Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X. Mol. Biol. Rep. 2011, 38:1523-1531.
    • (2011) Mol. Biol. Rep. , vol.38 , pp. 1523-1531
    • Lang, Q.1    Jin, C.2    Lai, L.3    Feng, J.4    Chen, S.5    Chen, J.6
  • 18
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee R.C., Feinbaum R.L., Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75:843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 19
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R., Li Y., Kristiansen K., Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 20
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu S., Sun Y.H., Shi R., Clark C., Li L., Chiang V.L. Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17:2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 21
    • 60149090481 scopus 로고    scopus 로고
    • Criteria for annotation of plant MicroRNAs
    • Meyers B.C., et al. Criteria for annotation of plant MicroRNAs. Plant Cell 2008, 20:3186-3190.
    • (2008) Plant Cell , vol.20 , pp. 3186-3190
    • Meyers, B.C.1
  • 23
    • 73249141415 scopus 로고    scopus 로고
    • The role of tobacco Aquaporin1 in improving water use efficiency, hydraulic conductivity, and yield production under salt stress
    • Sade N., Gebretsadik M., Seligmann R., Schwartz A., Wallach R., Moshelion M. The role of tobacco Aquaporin1 in improving water use efficiency, hydraulic conductivity, and yield production under salt stress. Plant Physiol. 2010, 152:245-254.
    • (2010) Plant Physiol. , vol.152 , pp. 245-254
    • Sade, N.1    Gebretsadik, M.2    Seligmann, R.3    Schwartz, A.4    Wallach, R.5    Moshelion, M.6
  • 24
    • 0001430173 scopus 로고
    • Nicotine biosynthetic enzyme activities in Nicotiana tabacum L. genotypes with different alkaloid levels
    • Saunders J.W., Bush L.P. Nicotine biosynthetic enzyme activities in Nicotiana tabacum L. genotypes with different alkaloid levels. Plant Physiol. 1979, 64:236-240.
    • (1979) Plant Physiol. , vol.64 , pp. 236-240
    • Saunders, J.W.1    Bush, L.P.2
  • 26
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • Sunkar R., Girke T., Jain P.K., Zhu J.K. Cloning and characterization of microRNAs from rice. Plant Cell 2005, 17:1397-1411.
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.K.4
  • 27
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
    • Sunkar R., Kapoor A., Zhu J.K. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 2006, 18:2051-2065.
    • (2006) Plant Cell , vol.18 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 28
    • 13944262052 scopus 로고    scopus 로고
    • A custom microarray platform for analysis of microRNA gene expression
    • Thomson J.M., Parker J., Perou C.M., Hammond S.M. A custom microarray platform for analysis of microRNA gene expression. Nat. Methods 2004, 1:47-53.
    • (2004) Nat. Methods , vol.1 , pp. 47-53
    • Thomson, J.M.1    Parker, J.2    Perou, C.M.3    Hammond, S.M.4
  • 29
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V.G., Tibshirani R., Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:5116-5121.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 30
    • 0008499014 scopus 로고
    • Coordinate gene activity in response to agents that induce systemic acquired resistance
    • Ward E.R., et al. Coordinate gene activity in response to agents that induce systemic acquired resistance. Plant Cell 1991, 3:1085-1094.
    • (1991) Plant Cell , vol.3 , pp. 1085-1094
    • Ward, E.R.1
  • 31
    • 0027730383 scopus 로고
    • Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
    • Wightman B., Ha I., Ruvkun G. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 1993, 75:855-862.
    • (1993) Cell , vol.75 , pp. 855-862
    • Wightman, B.1    Ha, I.2    Ruvkun, G.3
  • 32
    • 77951217925 scopus 로고    scopus 로고
    • Tobacco calcium-dependent protein kinases are differentially phosphorylated in vivo as part of a kinase cascade that regulates stress response
    • Witte C.P., Keinath N., Dubiella U., Demouliere R., Seal A., Romeis T. Tobacco calcium-dependent protein kinases are differentially phosphorylated in vivo as part of a kinase cascade that regulates stress response. J. Biol. Chem. 2010, 285:9740-9748.
    • (2010) J. Biol. Chem. , vol.285 , pp. 9740-9748
    • Witte, C.P.1    Keinath, N.2    Dubiella, U.3    Demouliere, R.4    Seal, A.5    Romeis, T.6
  • 33
    • 0029841590 scopus 로고    scopus 로고
    • Cytokinin controls the cell cycle at mitosis by stimulating the tyrosine dephosphorylation and activation of p34cdc2-like H1 histone kinase
    • Zhang K., Letham D.S., John P.C. Cytokinin controls the cell cycle at mitosis by stimulating the tyrosine dephosphorylation and activation of p34cdc2-like H1 histone kinase. Planta 1996, 200:2-12.
    • (1996) Planta , vol.200 , pp. 2-12
    • Zhang, K.1    Letham, D.S.2    John, P.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.