Molecular characterization showed limited genetic diversity among Salmonella Enteritidis isolated from humans and animals in Malaysia

Diagnostic Microbiology and Infectious Disease

Volumn 77, Issue 4, 2013, Pages 304-311

  Ngoi, Soo Tein ^a,b   Thong, Kwai Lin ^a,b  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

Antimicrobial resistance; Genotyping; MLVA; Multidrug resistance; PFGE; Salmonella Enteritidis

Indexed keywords

AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; CEFALOTIN; CEFOTAXIME; CEFTAZIDIME; CEFTRIAXONE; CHLORAMPHENICOL; CIPROFLOXACIN; COTRIMOXAZOLE; GENTAMICIN; KANAMYCIN; NALIDIXIC ACID; STREPTOMYCIN; SULFONAMIDE; TETRACYCLINE; TRIMETHOPRIM;

ALLELE; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HOST RANGE; HUMAN; MALAYSIA; MOLECULAR PHYLOGENY; MULTIDRUG RESISTANCE; MULTIPLE LOCUS VARIABLE NUMBER TANDEM REPEAT ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SALMONELLA ENTERITIDIS;

ANTIMICROBIAL RESISTANCE; GENOTYPING; MLVA; MULTIDRUG-RESISTANCE; PFGE; SALMONELLA ENTERITIDIS;

ANIMALS; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; ELECTROPHORESIS, GEL, PULSED-FIELD; GENETIC VARIATION; HUMANS; MALAYSIA; MICROBIAL SENSITIVITY TESTS; MINISATELLITE REPEATS; MULTILOCUS SEQUENCE TYPING; POLYMORPHISM, GENETIC; SALMONELLA ENTERITIDIS; SALMONELLA INFECTIONS; ZOONOSES;

EID: 84887616345     PISSN: 07328893     EISSN: 18790070     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2013.09.004     Document Type: Article

References (52)

1. Aarestrup F.M. Veterinary drug usage and antimicrobial resistance in bacteria of animal origin. Basic Clin Pharmacol 2005, 96:271-281.
2. Alvarez J., Sota M., Vivanco A.B., Perales I., Cisterna R., Rementeria A., et al. Development of a multiplex PCR technique for detection and epidemiological typing of Salmonella in human clinical samples. J Clin Microbiol 2004, 42:1734-1738.
3. Angulo F.J., Nargund V.N., Chiller T.C. Evidence of an association between use of anti-microbial agents in food animals and anti-microbial resistance among bacteria isolated from humans and the human health consequences of such resistance. J Vet Med B 2004, 51:374-379.
4. Bakeri S.A., Yasin R.M., Koh Y.T., Puthucheary S.D., Thong K.L. Genetic diversity of human isolates of Salmonella enterica serovar Enteritidis in Malaysia. J Appl Microbiol 2003, 95:773-780.
5. Beranek A., Mikula C., Rabold P., Arnhold D., Berghold C., Lederer I., et al. Multiple-locus variable-number tandem repeat analysis for subtyping of Salmonella enterica subsp. enterica serovar Enteritidis. Int J Med Microbiol 2009, 299:43-51.
6. Berg J.S., Khoury M.J., Evans J.P. Deploying whole genome sequencing in clinical practice and public health: meeting the challenge one bin at a time. Gen Med 2011, 13:499-504.
7. Best E.L., Lindstedt B.A., Cook A., Clifton Hadley F.A., Threlfall E.J., Liebana E. Multiple-locus variable-number tandem repeat analysis of Salmonella enterica subsp. enterica serovar Typhimurium: comparison of isolates from pigs, poultry and cases of human gastroenteritis. J Appl Microbiol 2007, 103:565-572.
8. Betancor L., Pereira M., Martinez A., Giossa G., Fookes M., Flores K., et al. Prevalence of Salmonella enterica in poultry and eggs in Uruguay during an epidemic due to Salmonella enterica serovar Enteritidis. J Clin Microbiol 2010, 48:2413-2423.
9. Boonmar S., Bangtrakulnonth A., Pornruangwong S., Terajima J., Watanabe H., Kaneko K.I., et al. Epidemiological analysis of Salmonella enteritidis isolates from humans and broiler chickens in Thailand by phage typing and pulsed-field gel electrophoresis. J Clin Microbiol 1998, 36:971-974.
10. Boxrud D., Pederson-Gulrud K., Wotton J., Medus C., Lyszkowicz E., Besser J., et al. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J Clin Microbiol 2007, 45:536-543.
11. Cho S., Boxrud D.J., Bartkus J.M., Whittam T.S., Saeed M. Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR. FEMS Microbiol Lett 2007, 275:16-23.
12. Clinical and Laboratory Standards Institute (CLSI) Performance standards for antimicrobial susceptibility testing; 21st informational supplement. CLSI 2011, 31.
13. de Oliveira F.A., Pasqualotto A.P., da Silva W.P., Tondo E.C. Characterization of Salmonella Enteritidis isolated from human samples. Food Res Int 2010, 45:1000-1003.
14. den Bakker H.C., Switt A.I.M., Cummings C.A., Hoelzer K., Degoricija L., Rodriguez-Rivera L.D., et al. A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type. Appl Environ Microbiol 2011, 77:8648-8655.
15. den Bakker H., Switt A.M., Govoni G., Cummings C., Ranieri M., Degoricija L., et al. Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica. BMC Genomics 2011, 12:425-436.
16. Dhanoa A., Fatt Q.K. Non-typhoidal Salmonella bacteraemia: epidemiology, clinical characteristics and its association with severe immunosuppression. Ann Clin Microbiol Antimicrob 2009, 8:1-7.
17. Douadi B., Thong K.L., Watanabe H., Puthucheary S.D. Characterization of drug-resistant Salmonella enterica serotype Typhimurium by antibiograms, plasmids, integrons, resistance genes, and PFGE. J Microbiol Biotechnol 2010, 20:1042-1052.
18. Fashae K., Ogunsola F., Aarestrup F.M., Hendriksen R.S. Antimicrobial susceptibility and serovars of Salmonella from chickens and humans in Ibadan, Nigeria. J Infect Dev Ctries 2010, 4:484-494.
19. Fluit A.C. Towards more virulent and antibiotic-resistant Salmonella?. FEMS Immunol Med Microbiol 2006, 43:1-11.
20. Foley S., Lynne A. Food animal-associated Salmonella challenges: pathogenicity and antimicrobial resistance. J Anim Sci 2008, 86:E173-E187.
21. Hendrikson R.S., Hyytia-Trees E., Pulsrilarn C., Pornruangwong S., Chaichana P., Svendsen C.A., et al. Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand. BMC Microbiol 2012, 12:92-99.
22. Hopkins K.L., Maguire C., Best E., Liebana E., Threlfall E.J. Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium. J Clin Microbiol 2007, 45:3058-3061.
23. Hunter P.R., Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988, 26:2465-2466.
24. Krumperman P.H. Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. Appl Environ Microbiol 1983, 46:165-170.
25. Lindgren M.M., Kotilainen P., Huovinen P., Hurme S., Lukinmaa S., Webber M.A., et al. Reduced fluoroquinolone susceptibility in Salmonella enterica isolates from travelers, Finland. Emerg Infect Dis 2009, 15:809-812.
26. Ling M.L., Wang G.C.Y. Epidemiological analysis of Salmonella enteritidis isolates in Singapore. J Infect 2001, 43:169-172.
27. Malorny B., Junker E., Helmuth R. Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol 2008, 8:1-8.
28. Modarressi S., Thong K.L. Isolation and molecular subtyping of Salmonella enterica from chicken, beef and street foods in Malaysia. Sci Res Essays 2010, 5:2713-2720.
29. Morpeth S.C., Ramadhani H.O., Crump J.A. Invasive non-typhi Salmonella disease in Africa. Clin Infect Dis 2009, 49:606-611.
30. Padungtod P., Kaneene J.B. Salmonella in food animals and humans in northern Thailand. Int J Food Microbiol 2006, 108:346-354.
31. Pang J.C., Chiu T.H., Helmuth R., Schroeter A., Guerra B., Tsen H.Y. A pulsed-field gel electrophoresis (PFGE) study that suggests a major world-wide clone of Salmonella enterica serovar Enteritidis. Int J Food Microbiol 2007, 116:305-312.
32. Pehrsson E.C., Forsberg K.J., Gibson M.K., Ahmadi S., Dantas G. Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs. Frontiers Microbiol 2013, 4:1-11.
33. Perry J., Yousef A. Salmonella enteritidis in shell eggs: evolving concerns and innovative control measures. Adv Appl Microbiol 2012, 81:243-267.
34. Preziosi M.J., Kandel S.M., Guiney D.G., Browne S.H. Microbiological analysis of non-typhoidal Salmonella strains causing distinct syndromes of bacteremia or enteritis in HIV/AIDS patients in San Diego, California. J Clin Microbiol 2012, 50:3598-3603.
35. Ribot E.M., Fair M.A., Gautom R., Cameron D.N., Hunter S.B., Swaminathan B., et al. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7, Salmonella, and Shigella for PulseNet. Foodbourne Pathog Dis 2006, 3:59-67.
36. Roseliza R., Maswati M.A., Hasnah Y., Ramlan M. Identification of Salmonella serotypes isolated from meat samples in Malaysia. Mal J Vet Res 2011, 2:59-64.
37. Sanpong P., Theeragool G., Wajjwalku W., Amavisit P. Characterization of multiple-antimicrobial resistant Salmonella isolated from pig farms in Thailand. Kasetsart J 2010, 44:643-651.
38. Severi E., Booth L., Johnson S., Cleary P., Rimington M., Saunders D., et al. Large outbreak of Salmonella Enteritidis PT8 in Portsmouth, UK, associated with a restaurant. Epidemiol Infect 2011, 1:1-9.
39. Singh B.R., Agarwal M., Chandra M., Verma M., Sharma G., Verma J.C., et al. Plasmid profile and drug resistance pattern of zoonotic Salmonella isolates from Indian buffaloes. J Infect Dev Ctries 2010, 4:477-483.
40. Solhan S., Chan P.P., Kurupatham L., Foong B.H., Ooi P.L., James L., et al. An outbreak of gastroenteritis caused by Salmonella enterica serotype Enteritidis traced to cream cakes. Western Pac Surveill Response J 2011, 2:1-8.
41. Son R., Ansary A., Salmah I., Maznah A. Survey of plasmids and resistance factors among veterinary isolates of Salmonella Enteritidis in Malaysia. World J Microbiol Biotechnol 1995, 11:315-318.
42. Tankouo-Sandjong B., Kinde H., Wallace I. Development of a sequence typing scheme for differentiation of Salmonella Enteritidis strains. FEMS Microbiol Lett 2012, 331:165-175.
43. Thomson N.R., Clayton D.J., Windhorst D., Vernikos G., Davidson S., Churcher C., et al. Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res 2008, 18:1624-1637.
44. Thong K.L., Ngeow Y.F., Altwegg M., Navaratnam P., Pang T. Molecular analysis of Salmonella enteritidis by pulsed-field gel electrophoresis and ribotyping. J Clin Microbiol 1995, 33:1070-1074.
45. Thong K.L., Lai K.S., Goh Y.L. Technical improvement in DNA preparation for pulsed-field gel electrophoresis. Mal J Sci 2003, 22:55-59.
46. Thong K.L., Lai W.L., Dhanoa A. Antimicrobial susceptibility and pulsed-field gel electrophoretic analysis of Salmonella in a tertiary hospital in northern Malaysia. J Infect Public Health 2011, 4:65-72.
47. Timme R.E., Allard M.W., Luo Y., Strain E., Pettengill J., Wang C., et al. Draft genome sequences of 21 Salmonella enterica serovar Enteritidis strains. J Bacteriol 2012, 194:5994-5995.
48. Tiong V., Thong K.L., Yusof M.Y.M., Hanifah Y.A., Sam J.I.C., Hassan H. Macrorestriction analysis and antimicrobial susceptibility profiling of Salmonella enterica at a university teaching hospital, Kuala Lumpur. Jpn J Infect Dis 2010, 63:317-322.
49. van Belkum A. Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immuno Med Microbiol 2007, 49:22-27.
50. Van T.T.H., Nguyen H.N.K., Smooker P.M., Coloe P.J. The antibiotic resistance characteristics of non-typhoidal Salmonella enterica isolated from food-producing animals, retail meat and humans in South East Asia. Int J Food Microbiol 2012, 154:98-106.
51. Velge P., Cloeckaert A., Barrow P. Emergence of Salmonella epidemics: the problems related to Salmonella enterica serotype Enteritidis and multiple antibiotic resistance in other major serotypes. Vet Res 2005, 36:267-288.
52. Wallace D.L. A method for comparing two hierarchical clusterings: comment. J Am Stat Assoc 1983, 78:569-576.