-
1
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27 2 (1999) 573-580
-
(1999)
Nucleic Acids Res.
, vol.27
, Issue.2
, pp. 573-580
-
-
Benson, G.1
-
2
-
-
33847075382
-
Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis
-
Boxrud D., Pederson-Gulrud K., Wotton J., Medus C., Lyszkowicz E., Besser J., and Bartkus J.M. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J. Clin. Microbiol. 45 2 (2007) 536-543
-
(2007)
J. Clin. Microbiol.
, vol.45
, Issue.2
, pp. 536-543
-
-
Boxrud, D.1
Pederson-Gulrud, K.2
Wotton, J.3
Medus, C.4
Lyszkowicz, E.5
Besser, J.6
Bartkus, J.M.7
-
3
-
-
9644254698
-
-
US Department of Health and Human Services, CDC, Atlanta, Georgia
-
CDC. Salmonella Surveillance: Annual Summary, 2005 (2006), US Department of Health and Human Services, CDC, Atlanta, Georgia
-
(2006)
Salmonella Surveillance: Annual Summary, 2005
-
-
CDC1
-
4
-
-
0027361203
-
Discriminatory power of typing schemes based on Simpson's index of diversity for Neisseria gonorrhoeae
-
Dillon J.A., Rahman M., and Yeung K.H. Discriminatory power of typing schemes based on Simpson's index of diversity for Neisseria gonorrhoeae. J. Clin. Microbiol. 31 10 (1993) 2831-2833
-
(1993)
J. Clin. Microbiol.
, vol.31
, Issue.10
, pp. 2831-2833
-
-
Dillon, J.A.1
Rahman, M.2
Yeung, K.H.3
-
5
-
-
45849141341
-
Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline study on the prevalence of Salmonella in holdings of laying hen flocks of Gallus gallus
-
EFSA. Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline study on the prevalence of Salmonella in holdings of laying hen flocks of Gallus gallus. EFSA J. 97 (2007)
-
(2007)
EFSA J.
, vol.97
-
-
EFSA1
-
6
-
-
56949092810
-
-
Enter-net, 2007. Annual report: 2005-surveillance of enteric pathogens in Europe and beyond. Enter-net surveillance hub, HPA, Centre for Infections, Colindale, London.
-
Enter-net, 2007. Annual report: 2005-surveillance of enteric pathogens in Europe and beyond. Enter-net surveillance hub, HPA, Centre for Infections, Colindale, London.
-
-
-
-
7
-
-
18544384548
-
Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium
-
Fakhr M.K., Nolan L.K., and Logue C.M. Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium. J. Clin. Microbiol. 43 5 (2005) 2215-2219
-
(2005)
J. Clin. Microbiol.
, vol.43
, Issue.5
, pp. 2215-2219
-
-
Fakhr, M.K.1
Nolan, L.K.2
Logue, C.M.3
-
8
-
-
33745548937
-
Distribution of molecular subtypes within Salmonella enterica serotype Enteritidis phage type 4 and S. Typhimurium definitive phage type 104 in nine European countries, 2000-2004: results of an international multi-centre study
-
Gatto A.J., Peters T.M., Green J., Fisher I.S., Gill O.N., O'brien S.J., Maguire C., Berghold C., Lederer I., Gerner-Smidt P., Torpdahl M., Siitonen A., Lukinmaa S., Tschäpe H., Prager R., Luzzi I., Dionisi A.M., van der Zwaluw W.K., Heck M., Coia J., Brown D., Usera M., Echeita A., and Threlfall E.J. Distribution of molecular subtypes within Salmonella enterica serotype Enteritidis phage type 4 and S. Typhimurium definitive phage type 104 in nine European countries, 2000-2004: results of an international multi-centre study. Epidemiol. Infect. 134 4 (2006) 729-736
-
(2006)
Epidemiol. Infect.
, vol.134
, Issue.4
, pp. 729-736
-
-
Gatto, A.J.1
Peters, T.M.2
Green, J.3
Fisher, I.S.4
Gill, O.N.5
O'brien, S.J.6
Maguire, C.7
Berghold, C.8
Lederer, I.9
Gerner-Smidt, P.10
Torpdahl, M.11
Siitonen, A.12
Lukinmaa, S.13
Tschäpe, H.14
Prager, R.15
Luzzi, I.16
Dionisi, A.M.17
van der Zwaluw, W.K.18
Heck, M.19
Coia, J.20
Brown, D.21
Usera, M.22
Echeita, A.23
Threlfall, E.J.24
more..
-
9
-
-
0345768453
-
Molecular differentiation of Mycobacterium bovis isolates. Review of main techniques and applications.
-
Haddad N., Masselot M., and Durand B. Molecular differentiation of Mycobacterium bovis isolates. Review of main techniques and applications. Res. Vet. Sci. 76 1 (2004) 1-18
-
(2004)
Res. Vet. Sci.
, vol.76
, Issue.1
, pp. 1-18
-
-
Haddad, N.1
Masselot, M.2
Durand, B.3
-
10
-
-
0024429456
-
Application of a numerical index of discriminatory power to a comparison of four physiochemical typing methods for Candida albicans
-
Hunter P.R., and Fraser C.A. Application of a numerical index of discriminatory power to a comparison of four physiochemical typing methods for Candida albicans. J. Clin. Microbiol. 27 10 (1989) 2156-2160
-
(1989)
J. Clin. Microbiol.
, vol.27
, Issue.10
, pp. 2156-2160
-
-
Hunter, P.R.1
Fraser, C.A.2
-
11
-
-
33746642166
-
Salmonella Typhimurium DT104 outbreak linked to imported minced beef, Norway, October-November 2005
-
Isakbaeva E., Lindstedt B.A., Schimmer B., Vardund T., Stavnes T.L., Hauge K., Gondrosen B., Blystad H., Kløvstad H., Aavitsland P., Nygård K., and Kapperud G. Salmonella Typhimurium DT104 outbreak linked to imported minced beef, Norway, October-November 2005. Euro. Surveill. 10 11 (2005) E051110.1
-
(2005)
Euro. Surveill.
, vol.10
, Issue.11
-
-
Isakbaeva, E.1
Lindstedt, B.A.2
Schimmer, B.3
Vardund, T.4
Stavnes, T.L.5
Hauge, K.6
Gondrosen, B.7
Blystad, H.8
Kløvstad, H.9
Aavitsland, P.10
Nygård, K.11
Kapperud, G.12
-
12
-
-
0036246561
-
Multilocus sequence typing for characterization of clinical and environmental Salmonella strains
-
Kotetishvili M., Stine O.C., Kreger A., Morris Jr. J.G., and Sulakvelidze A. Multilocus sequence typing for characterization of clinical and environmental Salmonella strains. J. Clin. Microbiol. 40 5 (2002) 1626-1635
-
(2002)
J. Clin. Microbiol.
, vol.40
, Issue.5
, pp. 1626-1635
-
-
Kotetishvili, M.1
Stine, O.C.2
Kreger, A.3
Morris Jr., J.G.4
Sulakvelidze, A.5
-
13
-
-
33745304795
-
Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates
-
Liao J.C., Li C.C., and Chiou C.S. Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates. BMC Microbiol. 6 (2006) 44
-
(2006)
BMC Microbiol.
, vol.6
, pp. 44
-
-
Liao, J.C.1
Li, C.C.2
Chiou, C.S.3
-
14
-
-
22244459534
-
Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
-
Lindstedt B.A. Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26 13 (2005) 2567-2582
-
(2005)
Electrophoresis
, vol.26
, Issue.13
, pp. 2567-2582
-
-
Lindstedt, B.A.1
-
15
-
-
0037387157
-
DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci
-
Lindstedt B.A., Heir E., Gjernes E., and Kapperud G. DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J. Clin. Microbiol. 41 4 (2003) 1469-1479
-
(2003)
J. Clin. Microbiol.
, vol.41
, Issue.4
, pp. 1469-1479
-
-
Lindstedt, B.A.1
Heir, E.2
Gjernes, E.3
Kapperud, G.4
-
16
-
-
5344254628
-
Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis
-
Lindstedt B.A., Vardund T., Aas L., and Kapperud G. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J. Microbiol. Methods 59 2 (2004) 163-172
-
(2004)
J. Microbiol. Methods
, vol.59
, Issue.2
, pp. 163-172
-
-
Lindstedt, B.A.1
Vardund, T.2
Aas, L.3
Kapperud, G.4
-
17
-
-
0042921111
-
Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats
-
Liu Y., Lee M.A., Ooi E.E., Mavis Y., Tan A.L., and Quek H.H. Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats. J. Clin. Microbiol. 41 9 (2003) 4388-4394
-
(2003)
J. Clin. Microbiol.
, vol.41
, Issue.9
, pp. 4388-4394
-
-
Liu, Y.1
Lee, M.A.2
Ooi, E.E.3
Mavis, Y.4
Tan, A.L.5
Quek, H.H.6
-
18
-
-
0033000468
-
Salmonella Enteritidis phage types 1 and 4: pheno- and genotypic epidemiology of recent outbreaks in Finland
-
Lukinmaa S., Schildt R., Rinttilä T., and Siitonen A. Salmonella Enteritidis phage types 1 and 4: pheno- and genotypic epidemiology of recent outbreaks in Finland. J. Clin. Microbiol. 37 7 (1999) 2176-2182
-
(1999)
J. Clin. Microbiol.
, vol.37
, Issue.7
, pp. 2176-2182
-
-
Lukinmaa, S.1
Schildt, R.2
Rinttilä, T.3
Siitonen, A.4
-
19
-
-
33645716472
-
Genomic diversity within phage types of Salmonella enterica ssp. enterica serotypes Enteritidis and Typhimurium
-
Lukinmaa S., Nakari U.M., Liimatainen A., and Siitonen A. Genomic diversity within phage types of Salmonella enterica ssp. enterica serotypes Enteritidis and Typhimurium. Foodborne Pathog. Dis. 3 1 (2006) 97-105
-
(2006)
Foodborne Pathog. Dis.
, vol.3
, Issue.1
, pp. 97-105
-
-
Lukinmaa, S.1
Nakari, U.M.2
Liimatainen, A.3
Siitonen, A.4
-
20
-
-
56949093474
-
-
Maddison, W.P., Maddison, D.R., 2006. Mesquite: a modular system for evolutionary analysis. Version 1.11.
-
Maddison, W.P., Maddison, D.R., 2006. Mesquite: a modular system for evolutionary analysis. Version 1.11.
-
-
-
-
21
-
-
0031972435
-
Fixation indices in subdivided populations
-
Nagylaki T. Fixation indices in subdivided populations. Genetics 148 3 (1998) 1325-1332
-
(1998)
Genetics
, vol.148
, Issue.3
, pp. 1325-1332
-
-
Nagylaki, T.1
-
22
-
-
0348110225
-
Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates
-
Noller A.C., McEllistrem M.C., Pacheco A.G., Boxrud D.J., and Harrison L.H. Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates. J. Clin. Microbiol. 41 12 (2003) 5389-5397
-
(2003)
J. Clin. Microbiol.
, vol.41
, Issue.12
, pp. 5389-5397
-
-
Noller, A.C.1
McEllistrem, M.C.2
Pacheco, A.G.3
Boxrud, D.J.4
Harrison, L.H.5
-
23
-
-
10844243674
-
Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes
-
Ramisse V., Houssu P., Hernandez E., Denoeud F., Hilaire V., Lisanti O., Ramisse F., Cavallo J.D., and Vergnaud G. Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J. Clin. Microbiol. 42 12 (2004) 5722-5730
-
(2004)
J. Clin. Microbiol.
, vol.42
, Issue.12
, pp. 5722-5730
-
-
Ramisse, V.1
Houssu, P.2
Hernandez, E.3
Denoeud, F.4
Hilaire, V.5
Lisanti, O.6
Ramisse, F.7
Cavallo, J.D.8
Vergnaud, G.9
-
24
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford K., Parkhill J., Crook J., Horsnell T., Rice P., Rajandream M.A., and Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 16 10 (2000) 944-945
-
(2000)
Bioinformatics
, vol.16
, Issue.10
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
25
-
-
33749171553
-
Salmonella Enteritidis phage type 21 outbreak in Austria, 2005
-
Schmid D., Schandl S., Pichler A.M., Kornschober C., Berghold C., Beranek A., Neubauer G., Neuhold-Wassermann M., Schwender W., Klauber A., Deutz A., Pless P., and Allerberger F. Salmonella Enteritidis phage type 21 outbreak in Austria, 2005. Euro. Surveill. 11 2 (2006) 67-69
-
(2006)
Euro. Surveill.
, vol.11
, Issue.2
, pp. 67-69
-
-
Schmid, D.1
Schandl, S.2
Pichler, A.M.3
Kornschober, C.4
Berghold, C.5
Beranek, A.6
Neubauer, G.7
Neuhold-Wassermann, M.8
Schwender, W.9
Klauber, A.10
Deutz, A.11
Pless, P.12
Allerberger, F.13
-
26
-
-
33750129022
-
A regional outbreak of S. Typhimurium in Denmark and identification of the source using MLVA typing
-
Torpdahl M., Sorensen G., Ethelberg S., Sandø G., Gammelgård K., and Porsbo L.J. A regional outbreak of S. Typhimurium in Denmark and identification of the source using MLVA typing. Euro. Surveill. 11 5 (2006) 134-136
-
(2006)
Euro. Surveill.
, vol.11
, Issue.5
, pp. 134-136
-
-
Torpdahl, M.1
Sorensen, G.2
Ethelberg, S.3
Sandø, G.4
Gammelgård, K.5
Porsbo, L.J.6
-
27
-
-
0141817852
-
Multi-locus sequence typing: a tool for global epidemiology
-
Urwin R., and Maiden M.C. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11 10 (2003) 479-487
-
(2003)
Trends Microbiol.
, vol.11
, Issue.10
, pp. 479-487
-
-
Urwin, R.1
Maiden, M.C.2
-
28
-
-
0030922326
-
Outbreak of amoxicillin-resistant Haemophilus influenzae type b: variable number of tandem repeats as novel molecular markers
-
van Belkum A., Melchers W.J., Ijsseldijk C., Nohlmans L., Verbrugh H., and Meis J.F. Outbreak of amoxicillin-resistant Haemophilus influenzae type b: variable number of tandem repeats as novel molecular markers. J. Clin. Microbiol. 35 6 (1997) 1517-1520
-
(1997)
J. Clin. Microbiol.
, vol.35
, Issue.6
, pp. 1517-1520
-
-
van Belkum, A.1
Melchers, W.J.2
Ijsseldijk, C.3
Nohlmans, L.4
Verbrugh, H.5
Meis, J.F.6
-
29
-
-
0031838719
-
Short-sequence DNA repeats in prokaryotic genomes
-
van Belkum A., Scherer S., van Alphen L., and Verbrugh H. Short-sequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62 2 (1998) 275-293
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, Issue.2
, pp. 275-293
-
-
van Belkum, A.1
Scherer, S.2
van Alphen, L.3
Verbrugh, H.4
-
30
-
-
0033389541
-
Occurrence and structure-function relationship of pentameric short sequence repeats in microbial genomes
-
van Belkum A., van Leeuwen W., Scherer S., and Verbrugh H. Occurrence and structure-function relationship of pentameric short sequence repeats in microbial genomes. Res. Microbiol. 150 9-10 (1999) 617-626
-
(1999)
Res. Microbiol.
, vol.150
, Issue.9-10
, pp. 617-626
-
-
van Belkum, A.1
van Leeuwen, W.2
Scherer, S.3
Verbrugh, H.4
-
31
-
-
0023424976
-
A phage-typing scheme for Salmonella Enteritidis
-
Ward L.R., de Sa J.D., and Rowe B. A phage-typing scheme for Salmonella Enteritidis. Epidemiol. Infect. 99 2 (1987) 291-294
-
(1987)
Epidemiol. Infect.
, vol.99
, Issue.2
, pp. 291-294
-
-
Ward, L.R.1
de Sa, J.D.2
Rowe, B.3
|