메뉴 건너뛰기




Volumn 10, Issue 1, 2013, Pages

Functional conservation of HIV-1 Gag: Implications for rational drug design

Author keywords

Amino acid conservation; Capsid; Drug binding site; Gag inhibitor; HIV subtype; Matrix; Natural polymorphism; Nucleocapsid

Indexed keywords

ANTI HUMAN IMMUNODEFICIENCY VIRUS AGENT; BENZIMIDAZOLE; BENZODIAZEPINE; BEVIRIMAT; CAPSID PROTEIN; GAG INHIBITOR; GAG PROTEIN; HUMAN IMMUNODEFICIENCY VIRUS VACCINE; MATRIX INHIBITOR; PF 3450074; PROTEIN INHIBITOR; UNCLASSIFIED DRUG;

EID: 84887394848     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/1742-4690-10-126     Document Type: Article
Times cited : (56)

References (34)
  • 1
    • 84858409977 scopus 로고    scopus 로고
    • The structural biology of HIV-1: mechanistic and therapeutic insights
    • 10.1038/nrmicro2747, 3588166, 22421880
    • Engelman A, Cherepanov P. The structural biology of HIV-1: mechanistic and therapeutic insights. Nat Rev Microbiol 2012, 10:279-290. 10.1038/nrmicro2747, 3588166, 22421880.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 279-290
    • Engelman, A.1    Cherepanov, P.2
  • 2
    • 84855600681 scopus 로고    scopus 로고
    • HIV type 1 Gag as a target for antiviral therapy
    • 10.1089/aid.2011.0230, 3251841, 21848364
    • Waheed AA, Freed EO. HIV type 1 Gag as a target for antiviral therapy. AIDS Res Hum Retroviruses 2012, 28:54-75. 10.1089/aid.2011.0230, 3251841, 21848364.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 54-75
    • Waheed, A.A.1    Freed, E.O.2
  • 3
    • 84868609925 scopus 로고    scopus 로고
    • Molecular recognition in the human immunodeficiency virus capsid and antiviral design
    • 10.1016/j.virusres.2012.06.016, 22728445
    • Bocanegra R, Rodriguez-Huete A, Fuertes MA, Del Alamo M, Mateu MG. Molecular recognition in the human immunodeficiency virus capsid and antiviral design. Virus Res 2012, 169:388-410. 10.1016/j.virusres.2012.06.016, 22728445.
    • (2012) Virus Res , vol.169 , pp. 388-410
    • Bocanegra, R.1    Rodriguez-Huete, A.2    Fuertes, M.A.3    Del Alamo, M.4    Mateu, M.G.5
  • 4
    • 59749083393 scopus 로고    scopus 로고
    • Novel targets for antiretroviral therapy: clinical progress to date
    • 10.2165/00003495-200969010-00003, 19192935
    • Dau B, Holodniy M. Novel targets for antiretroviral therapy: clinical progress to date. Drugs 2009, 69:31-50. 10.2165/00003495-200969010-00003, 19192935.
    • (2009) Drugs , vol.69 , pp. 31-50
    • Dau, B.1    Holodniy, M.2
  • 5
    • 35548986260 scopus 로고    scopus 로고
    • Maturation inhibitors: a new therapeutic class targets the virus structure
    • Salzwedel K, Martin DE, Sakalian M. Maturation inhibitors: a new therapeutic class targets the virus structure. AIDS Rev 2007, 9:162-172.
    • (2007) AIDS Rev , vol.9 , pp. 162-172
    • Salzwedel, K.1    Martin, D.E.2    Sakalian, M.3
  • 6
    • 79952414942 scopus 로고    scopus 로고
    • Isolation W-UNfH, Characterisation: Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • 10.1097/QAD.0b013e328342ff93, 3755761, 21297424
    • Hemelaar J, Gouws E, Ghys PD, Osmanov S. Isolation W-UNfH, Characterisation: Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 2011, 25:679-689. 10.1097/QAD.0b013e328342ff93, 3755761, 21297424.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 8
    • 77950929797 scopus 로고    scopus 로고
    • Polymorphisms in Gag spacer peptide 1 confer varying levels of resistance to the HIV- 1 maturation inhibitor bevirimat
    • 10.1186/1742-4690-7-36, 2873507, 20406463
    • Adamson CS, Sakalian M, Salzwedel K, Freed EO. Polymorphisms in Gag spacer peptide 1 confer varying levels of resistance to the HIV- 1 maturation inhibitor bevirimat. Retrovirology 2010, 7:36. 10.1186/1742-4690-7-36, 2873507, 20406463.
    • (2010) Retrovirology , vol.7 , pp. 36
    • Adamson, C.S.1    Sakalian, M.2    Salzwedel, K.3    Freed, E.O.4
  • 10
    • 34948888180 scopus 로고    scopus 로고
    • Phase I and II study of the safety, virologic effect, and pharmacokinetics/pharmacodynamics of single-dose 3-o-(3',3'-dimethylsuccinyl)betulinic acid (bevirimat) against human immunodeficiency virus infection
    • 10.1128/AAC.00152-07, 2043264, 17638699
    • Smith PF, Ogundele A, Forrest A, Wilton J, Salzwedel K, Doto J, Allaway GP, Martin DE. Phase I and II study of the safety, virologic effect, and pharmacokinetics/pharmacodynamics of single-dose 3-o-(3',3'-dimethylsuccinyl)betulinic acid (bevirimat) against human immunodeficiency virus infection. Antimicrob Agents Chemother 2007, 51:3574-3581. 10.1128/AAC.00152-07, 2043264, 17638699.
    • (2007) Antimicrob Agents Chemother , vol.51 , pp. 3574-3581
    • Smith, P.F.1    Ogundele, A.2    Forrest, A.3    Wilton, J.4    Salzwedel, K.5    Doto, J.6    Allaway, G.P.7    Martin, D.E.8
  • 11
    • 82755190460 scopus 로고    scopus 로고
    • The prototype HIV-1 maturation inhibitor, bevirimat, binds to the CA-SP1 cleavage site in immature Gag particles
    • 10.1186/1742-4690-8-101, 3267693, 22151792
    • Nguyen AT, Feasley CL, Jackson KW, Nitz TJ, Salzwedel K, Air GM, Sakalian M. The prototype HIV-1 maturation inhibitor, bevirimat, binds to the CA-SP1 cleavage site in immature Gag particles. Retrovirology 2011, 8:101. 10.1186/1742-4690-8-101, 3267693, 22151792.
    • (2011) Retrovirology , vol.8 , pp. 101
    • Nguyen, A.T.1    Feasley, C.L.2    Jackson, K.W.3    Nitz, T.J.4    Salzwedel, K.5    Air, G.M.6    Sakalian, M.7
  • 12
    • 79959241949 scopus 로고    scopus 로고
    • A single polymorphism in HIV-1 subtype C SP1 is sufficient to confer natural resistance to the maturation inhibitor bevirimat
    • 10.1128/AAC.01435-10, 3122462, 21502630
    • Lu W, Salzwedel K, Wang D, Chakravarty S, Freed EO, Wild CT, Li F. A single polymorphism in HIV-1 subtype C SP1 is sufficient to confer natural resistance to the maturation inhibitor bevirimat. Antimicrob Agents Chemother 2011, 55:3324-3329. 10.1128/AAC.01435-10, 3122462, 21502630.
    • (2011) Antimicrob Agents Chemother , vol.55 , pp. 3324-3329
    • Lu, W.1    Salzwedel, K.2    Wang, D.3    Chakravarty, S.4    Freed, E.O.5    Wild, C.T.6    Li, F.7
  • 14
    • 57649116079 scopus 로고    scopus 로고
    • Residues in the HIV-1 capsid assembly inhibitor binding site are essential for maintaining the assembly-competent quaternary structure of the capsid protein
    • 10.1074/jbc.M804230200, 18772135
    • Bartonova V, Igonet S, Sticht J, Glass B, Habermann A, Vaney MC, Sehr P, Lewis J, Rey FA, Krausslich HG. Residues in the HIV-1 capsid assembly inhibitor binding site are essential for maintaining the assembly-competent quaternary structure of the capsid protein. J Biol Chem 2008, 283:32024-32033. 10.1074/jbc.M804230200, 18772135.
    • (2008) J Biol Chem , vol.283 , pp. 32024-32033
    • Bartonova, V.1    Igonet, S.2    Sticht, J.3    Glass, B.4    Habermann, A.5    Vaney, M.C.6    Sehr, P.7    Lewis, J.8    Rey, F.A.9    Krausslich, H.G.10
  • 15
    • 84864007910 scopus 로고    scopus 로고
    • Distinct effects of two HIV-1 capsid assembly inhibitor families that bind the same site within the N-terminal domain of the viral CA protein
    • 10.1128/JVI.00493-12, 3393593, 22496222
    • Lemke CT, Titolo S, von Schwedler U, Goudreau N, Mercier JF, Wardrop E, Faucher AM, Coulombe R, Banik SS, Fader L, et al. Distinct effects of two HIV-1 capsid assembly inhibitor families that bind the same site within the N-terminal domain of the viral CA protein. J Virol 2012, 86:6643-6655. 10.1128/JVI.00493-12, 3393593, 22496222.
    • (2012) J Virol , vol.86 , pp. 6643-6655
    • Lemke, C.T.1    Titolo, S.2    von Schwedler, U.3    Goudreau, N.4    Mercier, J.F.5    Wardrop, E.6    Faucher, A.M.7    Coulombe, R.8    Banik, S.S.9    Fader, L.10
  • 16
    • 84880184277 scopus 로고    scopus 로고
    • Development of prophylactic vaccines against HIV-1
    • 10.1186/1742-4690-10-72, 3722125, 23866844
    • Schiffner T, Sattentau QJ, Dorrell L. Development of prophylactic vaccines against HIV-1. Retrovirology 2013, 10:72. 10.1186/1742-4690-10-72, 3722125, 23866844.
    • (2013) Retrovirology , vol.10 , pp. 72
    • Schiffner, T.1    Sattentau, Q.J.2    Dorrell, L.3
  • 17
    • 84879290459 scopus 로고    scopus 로고
    • A global approach to HIV-1 vaccine development
    • 10.1111/imr.12073, 23772627
    • Stephenson KE, Barouch DH. A global approach to HIV-1 vaccine development. Immunol Rev 2013, 254:295-304. 10.1111/imr.12073, 23772627.
    • (2013) Immunol Rev , vol.254 , pp. 295-304
    • Stephenson, K.E.1    Barouch, D.H.2
  • 18
    • 52749086245 scopus 로고    scopus 로고
    • Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors
    • 10.1186/1742-4690-5-74, 2546438, 18687142
    • Rhee SY, Liu TF, Kiuchi M, Zioni R, Gifford RJ, Holmes SP, Shafer RW. Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors. Retrovirology 2008, 5:74. 10.1186/1742-4690-5-74, 2546438, 18687142.
    • (2008) Retrovirology , vol.5 , pp. 74
    • Rhee, S.Y.1    Liu, T.F.2    Kiuchi, M.3    Zioni, R.4    Gifford, R.J.5    Holmes, S.P.6    Shafer, R.W.7
  • 19
    • 84874539069 scopus 로고    scopus 로고
    • The NTD-CTD intersubunit interface plays a critical role in assembly and stabilization of the HIV-1 capsid
    • 10.1186/1742-4690-10-29, 3623829, 23497318
    • Yufenyuy EL, Aiken C. The NTD-CTD intersubunit interface plays a critical role in assembly and stabilization of the HIV-1 capsid. Retrovirology 2013, 10:29. 10.1186/1742-4690-10-29, 3623829, 23497318.
    • (2013) Retrovirology , vol.10 , pp. 29
    • Yufenyuy, E.L.1    Aiken, C.2
  • 20
    • 79955486153 scopus 로고    scopus 로고
    • Antiviral activity of alpha-helical stapled peptides designed from the HIV-1 capsid dimerization domain
    • 10.1186/1742-4690-8-28, 3097154, 21539734
    • Zhang H, Curreli F, Zhang X, Bhattacharya S, Waheed AA, Cooper A, Cowburn D, Freed EO, Debnath AK. Antiviral activity of alpha-helical stapled peptides designed from the HIV-1 capsid dimerization domain. Retrovirology 2011, 8:28. 10.1186/1742-4690-8-28, 3097154, 21539734.
    • (2011) Retrovirology , vol.8 , pp. 28
    • Zhang, H.1    Curreli, F.2    Zhang, X.3    Bhattacharya, S.4    Waheed, A.A.5    Cooper, A.6    Cowburn, D.7    Freed, E.O.8    Debnath, A.K.9
  • 21
    • 84874340334 scopus 로고    scopus 로고
    • Monitoring binding of HIV-1 capsid assembly inhibitors using (19)F ligand-and (15)N protein-based NMR and X-ray crystallography: early hit validation of a benzodiazepine series
    • 10.1002/cmdc.201200580, 23401268
    • Goudreau N, Coulombe R, Faucher AM, Grand-Maitre C, Lacoste JE, Lemke CT, Malenfant E, Bousquet Y, Fader L, Simoneau B, et al. Monitoring binding of HIV-1 capsid assembly inhibitors using (19)F ligand-and (15)N protein-based NMR and X-ray crystallography: early hit validation of a benzodiazepine series. ChemMedChem 2013, 8:405-414. 10.1002/cmdc.201200580, 23401268.
    • (2013) ChemMedChem , vol.8 , pp. 405-414
    • Goudreau, N.1    Coulombe, R.2    Faucher, A.M.3    Grand-Maitre, C.4    Lacoste, J.E.5    Lemke, C.T.6    Malenfant, E.7    Bousquet, Y.8    Fader, L.9    Simoneau, B.10
  • 22
    • 43049089699 scopus 로고    scopus 로고
    • Nucleocapsid protein function in early infection processes
    • 10.1016/j.virusres.2007.12.006, 2789563, 18279991
    • Thomas JA, Gorelick RJ. Nucleocapsid protein function in early infection processes. Virus Res 2008, 134:39-63. 10.1016/j.virusres.2007.12.006, 2789563, 18279991.
    • (2008) Virus Res , vol.134 , pp. 39-63
    • Thomas, J.A.1    Gorelick, R.J.2
  • 23
    • 84874297767 scopus 로고    scopus 로고
    • Identification of a small-molecule inhibitor of HIV-1 assembly that targets the phosphatidylinositol (4,5)-bisphosphate binding site of the HIV-1 matrix protein
    • 10.1002/cmdc.201200577, 23361947
    • Zentner I, Sierra LJ, Fraser AK, Maciunas L, Mankowski MK, Vinnik A, Fedichev P, Ptak RG, Martin-Garcia J, Cocklin S. Identification of a small-molecule inhibitor of HIV-1 assembly that targets the phosphatidylinositol (4,5)-bisphosphate binding site of the HIV-1 matrix protein. ChemMedChem 2013, 8:426-432. 10.1002/cmdc.201200577, 23361947.
    • (2013) ChemMedChem , vol.8 , pp. 426-432
    • Zentner, I.1    Sierra, L.J.2    Fraser, A.K.3    Maciunas, L.4    Mankowski, M.K.5    Vinnik, A.6    Fedichev, P.7    Ptak, R.G.8    Martin-Garcia, J.9    Cocklin, S.10
  • 26
    • 80055055652 scopus 로고    scopus 로고
    • Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints
    • 10.1186/1742-4690-8-87, 3229471, 22044801
    • Snoeck J, Fellay J, Bartha I, Douek DC, Telenti A. Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints. Retrovirology 2011, 8:87. 10.1186/1742-4690-8-87, 3229471, 22044801.
    • (2011) Retrovirology , vol.8 , pp. 87
    • Snoeck, J.1    Fellay, J.2    Bartha, I.3    Douek, D.C.4    Telenti, A.5
  • 28
    • 84864505786 scopus 로고    scopus 로고
    • Human immunodeficiency virus Gag and protease: partners in resistance
    • 10.1186/1742-4690-9-63, 3422997, 22867298
    • Fun A, Wensing AM, Verheyen J, Nijhuis M. Human immunodeficiency virus Gag and protease: partners in resistance. Retrovirology 2012, 9:63. 10.1186/1742-4690-9-63, 3422997, 22867298.
    • (2012) Retrovirology , vol.9 , pp. 63
    • Fun, A.1    Wensing, A.M.2    Verheyen, J.3    Nijhuis, M.4
  • 29
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • 10.1093/molbev/msp259, 19854763
    • Gouy M, Guindon S, Gascuel O. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010, 27:221-224. 10.1093/molbev/msp259, 19854763.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 30
    • 0034124124 scopus 로고    scopus 로고
    • Detecting hypermutations in viral sequences with an emphasis on G A hypermutation
    • 10.1093/bioinformatics/16.4.400, 10869039
    • Rose PP, Korber BT. Detecting hypermutations in viral sequences with an emphasis on G A hypermutation. Bioinformatics 2000, 16:400-401. 10.1093/bioinformatics/16.4.400, 10869039.
    • (2000) Bioinformatics , vol.16 , pp. 400-401
    • Rose, P.P.1    Korber, B.T.2
  • 33
    • 79960395595 scopus 로고    scopus 로고
    • Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction
    • 10.1093/bioinformatics/btr331, 21636590
    • Zhang Z, Li Y, Lin B, Schroeder M, Huang B. Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. Bioinformatics 2011, 27:2083-2088. 10.1093/bioinformatics/btr331, 21636590.
    • (2011) Bioinformatics , vol.27 , pp. 2083-2088
    • Zhang, Z.1    Li, Y.2    Lin, B.3    Schroeder, M.4    Huang, B.5
  • 34
    • 0034064511 scopus 로고    scopus 로고
    • Conservation among HSP60 sequences in relation to structure, function, and evolution
    • 2144576, 10752609
    • Brocchieri L, Karlin S. Conservation among HSP60 sequences in relation to structure, function, and evolution. Protein Sci 2000, 9:476-486. 2144576, 10752609.
    • (2000) Protein Sci , vol.9 , pp. 476-486
    • Brocchieri, L.1    Karlin, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.