메뉴 건너뛰기




Volumn 6, Issue 6, 2013, Pages 1728-1738

Direct Quantification of Campylobacter jejuni in Chicken Fecal Samples Using Real-Time PCR: Evaluation of Six Rapid DNA Extraction Methods

Author keywords

Campylobacter; Chickens; DNA extraction methods; Quantification; Real time PCR

Indexed keywords

CAMPYLOBACTERS; CHICKENS; DNA EXTRACTION; QUANTIFICATION; REAL-TIME PCR;

EID: 84887318105     PISSN: 19369751     EISSN: 1936976X     Source Type: Journal    
DOI: 10.1007/s12161-013-9685-6     Document Type: Article
Times cited : (9)

References (93)
  • 1
    • 0000374167 scopus 로고    scopus 로고
    • Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples
    • Abu Al-Soud W, Rådström P (1998) Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples. Appl Environ Microbiol 64: 3748-3753.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3748-3753
    • Abu Al-Soud, W.1    Rådström, P.2
  • 2
    • 0034459011 scopus 로고    scopus 로고
    • Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat
    • Abu Al-Soud W, Rådström P (2000) Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat. J Clin Microbiol 38: 4463-4470.
    • (2000) J Clin Microbiol , vol.38 , pp. 4463-4470
    • Abu Al-Soud, W.1    Rådström, P.2
  • 3
    • 24344494455 scopus 로고    scopus 로고
    • Characterization of the PCR inhibitory effect of bile to optimize real-time PCR detection of Helicobacter species
    • Abu Al-Soud W, Ouis IS, Li DQ, Ljungh A, Wadström T (2005) Characterization of the PCR inhibitory effect of bile to optimize real-time PCR detection of Helicobacter species. FEMS Immunol Med Microbiol 44: 177-182.
    • (2005) FEMS Immunol Med Microbiol , vol.44 , pp. 177-182
    • Abu Al-Soud, W.1    Ouis, I.S.2    Li, D.Q.3    Ljungh, A.4    Wadström, T.5
  • 4
    • 0027182007 scopus 로고
    • Interference of PCR amplification by the polyamines, spermine and spermidine
    • Ahokas H, Erkkila MJ (1993) Interference of PCR amplification by the polyamines, spermine and spermidine. PCR Methods Appl 3: 65-68.
    • (1993) PCR Methods Appl , vol.3 , pp. 65-68
    • Ahokas, H.1    Erkkila, M.J.2
  • 5
    • 84887318667 scopus 로고    scopus 로고
    • Salmonella. Bacteriological Analytical Manual Online
    • Available at, Accessed 15 Sept 2012, Chapter 1
    • Andrews WH, Hammack TS (2003) Salmonella. Bacteriological Analytical Manual Online, Chapter 1. Food Sampling and Preparation of Sample Homogenate. Available at http://www. fda. gov/Food/ScienceResearch/LaboratoryMethods/BacteriologicalAnalyticalManualBAM/ucm063335. htm Accessed 15 Sept 2012.
    • (2003) Food Sampling and Preparation of Sample Homogenate
    • Andrews, W.H.1    Hammack, T.S.2
  • 7
    • 67649370543 scopus 로고    scopus 로고
    • Limit of blank, limit of detection and limit of quantitation
    • Armbruster DA, Pry T (2008) Limit of blank, limit of detection and limit of quantitation. Clin Biochem Rev 29: S49-S52.
    • (2008) Clin Biochem Rev , vol.29
    • Armbruster, D.A.1    Pry, T.2
  • 8
    • 79952146512 scopus 로고    scopus 로고
    • A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools
    • Barnard TG, Robertson CA, Jagals P, Potgieter N (2011) A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Afr J Biotechnol 10: 1485-1490.
    • (2011) Afr J Biotechnol , vol.10 , pp. 1485-1490
    • Barnard, T.G.1    Robertson, C.A.2    Jagals, P.3    Potgieter, N.4
  • 12
    • 33748798872 scopus 로고    scopus 로고
    • Critical points of DNA quantification by real-time PCR - effects of DNA extraction method and sample matrix on quantification of genetically modified organisms
    • Cankar K, Stebih D, Dreo T, Zel J, Gruden K (2006) Critical points of DNA quantification by real-time PCR - effects of DNA extraction method and sample matrix on quantification of genetically modified organisms. BMC Biotechnol 14: 37-51.
    • (2006) BMC Biotechnol , vol.14 , pp. 37-51
    • Cankar, K.1    Stebih, D.2    Dreo, T.3    Zel, J.4    Gruden, K.5
  • 13
    • 0035490929 scopus 로고    scopus 로고
    • Development of a combined selection and enrichment PCR procedure for Clostridium botulinum types B, E and F and its use to determine prevalence in fecal samples from slaughter pigs
    • Dahlenborg M, Borch E, Rådström P (2001) Development of a combined selection and enrichment PCR procedure for Clostridium botulinum types B, E and F and its use to determine prevalence in fecal samples from slaughter pigs. Appl Environ Microbiol 67: 4781-4789.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4781-4789
    • Dahlenborg, M.1    Borch, E.2    Rådström, P.3
  • 14
    • 0026580752 scopus 로고
    • The effects of plant polysaccharides and buffer additives on PCR
    • Demeke T, Adams RP (1992) The effects of plant polysaccharides and buffer additives on PCR. Biotechniques 12: 332-334.
    • (1992) Biotechniques , vol.12 , pp. 332-334
    • Demeke, T.1    Adams, R.P.2
  • 15
    • 77949917327 scopus 로고    scopus 로고
    • Comparison of different standards for real-time PCR-based absolute quantification
    • Dhanasekaran S, Doherty TM, Kenneth J (2010) Comparison of different standards for real-time PCR-based absolute quantification. J Immunol Methods 354: 34-39.
    • (2010) J Immunol Methods , vol.354 , pp. 34-39
    • Dhanasekaran, S.1    Doherty, T.M.2    Kenneth, J.3
  • 16
    • 77957360493 scopus 로고    scopus 로고
    • Simultaneous detection and differentiation by multiplex real time RT-PCR of highly pathogenic avian influenza subtype H5N1 classic (clade 2.2.1 proper) and escape mutant (clade 2.2.1 variant) lineages in Egypt
    • El Abdelwhab SM, Erfan AM, Grund C, Ziller M, Arafa AS, Beer M, Aly MM, Hafez HM, Harder TC (2010) Simultaneous detection and differentiation by multiplex real time RT-PCR of highly pathogenic avian influenza subtype H5N1 classic (clade 2. 2. 1 proper) and escape mutant (clade 2. 2. 1 variant) lineages in Egypt. Virol J 7: 260.
    • (2010) Virol J , vol.7 , pp. 260
    • El Abdelwhab, S.M.1    Erfan, A.M.2    Grund, C.3    Ziller, M.4    Arafa, A.S.5    Beer, M.6    Aly, M.M.7    Hafez, H.M.8    Harder, T.C.9
  • 17
    • 84887321442 scopus 로고    scopus 로고
    • Eurogentec, Available at, Accessed 11 Sept 2012
    • Eurogentec (2012) QPCR guide. Available at http://www. eurogentec. com/uploads/qPCR-guide. pdf Accessed 11 Sept 2012.
    • (2012) QPCR guide
  • 18
    • 34249908634 scopus 로고    scopus 로고
    • Insufficient differentiation of live and dead Campylobacter jejuni and Listeria monocytogenes cells by ethidium monoazide (EMA) compromises EMA/real-time PCR
    • Flekna G, Stefanic P, Wagner M, Smulders FJ, Mozina SS, Hein I (2007) Insufficient differentiation of live and dead Campylobacter jejuni and Listeria monocytogenes cells by ethidium monoazide (EMA) compromises EMA/real-time PCR. Res Microbiol 158: 405-412.
    • (2007) Res Microbiol , vol.158 , pp. 405-412
    • Flekna, G.1    Stefanic, P.2    Wagner, M.3    Smulders, F.J.4    Mozina, S.S.5    Hein, I.6
  • 19
    • 79957653700 scopus 로고    scopus 로고
    • Enhancing surveillance of potentially foodborne enteric diseases in New Zealand: Human campylobacteriosis in the Manawatu, Palmerston North (NZ): Hopkirk Institute. Available at, Accessed 19 Aug 2012
    • French N (2008) Molecular Epidemiology and Veterinary Public Health Group. Enhancing surveillance of potentially foodborne enteric diseases in New Zealand: Human campylobacteriosis in the Manawatu, Palmerston North (NZ): Hopkirk Institute. Available at http://www. foodsafety. govt. nz/elibrary/industry/enhancing-surveillance-potentially-research-projects-2/Campy_Attribution_Manawatu. pdf Accessed 19 Aug 2012.
    • (2008) Molecular Epidemiology and Veterinary Public Health Group
    • French, N.1
  • 20
    • 84876429153 scopus 로고    scopus 로고
    • Design and data analysis of experimental trials to test vaccine candidates against zoonotic pathogens in animals: the case of a clinical trial against Campylobacter in broilers
    • Garcia AB, Bahrndorff S, Hald B, Hoorfar J, Madsen M, Vigre H (2012) Design and data analysis of experimental trials to test vaccine candidates against zoonotic pathogens in animals: the case of a clinical trial against Campylobacter in broilers. Expert Rev Vaccines 11(10): 1179-1188.
    • (2012) Expert Rev Vaccines , vol.11 , Issue.10 , pp. 1179-1188
    • Garcia, A.B.1    Bahrndorff, S.2    Hald, B.3    Hoorfar, J.4    Madsen, M.5    Vigre, H.6
  • 21
    • 2442478241 scopus 로고    scopus 로고
    • Evaluation of a QiaAmp DNA stool purification kit for Shiga-toxigenic Escherichia coli detection in bovine fecal swabs by PCR
    • Gioffré A, Meichtri L, Zumárraga M, Rodríguez R, Cataldi A (2004) Evaluation of a QiaAmp DNA stool purification kit for Shiga-toxigenic Escherichia coli detection in bovine fecal swabs by PCR. Rev Argent Microbiol 36: 1-5.
    • (2004) Rev Argent Microbiol , vol.36 , pp. 1-5
    • Gioffré, A.1    Meichtri, L.2    Zumárraga, M.3    Rodríguez, R.4    Cataldi, A.5
  • 22
    • 0141482157 scopus 로고    scopus 로고
    • Real-time PCR for quantification of Giardia and Cryptosporidium in environmental water samples and sewage
    • Guy RA, Payment P, Krull UJ, Horgen PA (2003) Real-time PCR for quantification of Giardia and Cryptosporidium in environmental water samples and sewage. Appl Environ Microbiol 69: 5178-5185.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5178-5185
    • Guy, R.A.1    Payment, P.2    Krull, U.J.3    Horgen, P.A.4
  • 24
    • 0034462426 scopus 로고    scopus 로고
    • PCR detection of Escherichia coli O157:H7 directly from stools: evaluation of commercial extraction methods for purifying fecal DNA
    • Holland JL, Louie L, Simor AE, Louie M (2000) PCR detection of Escherichia coli O157: H7 directly from stools: evaluation of commercial extraction methods for purifying fecal DNA. J Clin Microbiol 38: 4108-4113.
    • (2000) J Clin Microbiol , vol.38 , pp. 4108-4113
    • Holland, J.L.1    Louie, L.2    Simor, A.E.3    Louie, M.4
  • 25
    • 84887319880 scopus 로고    scopus 로고
    • Invitrogen, Available at, Accessed 5 July 2013
    • Invitrogen (2013) Experimental Variability and Replicates in siRNA Experiments. Available at http://www. invitrogen. com/site/us/en/home/References/Ambion-Tech-Support/rnai-sirna/tech-notes/experimental-variability-and-replicates-in-sirna-experiments. html Accessed 5 July 2013.
    • (2013) Experimental Variability and Replicates in siRNA Experiments
  • 26
    • 3342979406 scopus 로고    scopus 로고
    • Comparison of first void urine and urogenital swab specimens for detection of Mycoplasma genitalium and Chlamydia trachomatis by polymerase chain reaction in patients attending a sexually transmitted disease clinic
    • Jensen JS, Bjornelius E, Dohn B, Lidbrink P (2004) Comparison of first void urine and urogenital swab specimens for detection of Mycoplasma genitalium and Chlamydia trachomatis by polymerase chain reaction in patients attending a sexually transmitted disease clinic. Sex Transm Dis 31: 499-507.
    • (2004) Sex Transm Dis , vol.31 , pp. 499-507
    • Jensen, J.S.1    Bjornelius, E.2    Dohn, B.3    Lidbrink, P.4
  • 27
    • 15444364560 scopus 로고    scopus 로고
    • Development of procedures for direct extraction of Cryptosporidium DNA from water concentrates and for relief of PCR inhibitors
    • Jiang J, Alderisio KA, Singh A, Xiao L (2005) Development of procedures for direct extraction of Cryptosporidium DNA from water concentrates and for relief of PCR inhibitors. Appl Environ Microbiol 71: 1135-1141.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1135-1141
    • Jiang, J.1    Alderisio, K.A.2    Singh, A.3    Xiao, L.4
  • 28
    • 40249116228 scopus 로고    scopus 로고
    • Adoption of HACCP system in the Chinese food industry: A comparative analysis
    • Jin S, Zhou J, Ye J (2008) Adoption of HACCP system in the Chinese food industry: A comparative analysis. Food Control 19: 823-828.
    • (2008) Food Control , vol.19 , pp. 823-828
    • Jin, S.1    Zhou, J.2    Ye, J.3
  • 29
    • 2942563802 scopus 로고    scopus 로고
    • Enrichment followed by quantitative PCR both for rapid detection and as a tool for quantitative risk assessment of food-borne thermotolerant campylobacters
    • Josefsen MH, Jacobsen NR, Hoorfar J (2004) Enrichment followed by quantitative PCR both for rapid detection and as a tool for quantitative risk assessment of food-borne thermotolerant campylobacters. Appl Environ Microbiol 70: 3588-3592.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3588-3592
    • Josefsen, M.H.1    Jacobsen, N.R.2    Hoorfar, J.3
  • 30
    • 77955580586 scopus 로고    scopus 로고
    • Rapid quantification of viable Campylobacter bacteria on chicken carcasses, using real-time PCR and propidium monoazide treatment, as a tool for quantitative risk assessment
    • Josefsen MH, Löfström C, Hansen TB, Christensen LS, Olsen JE, Hoorfar J (2010) Rapid quantification of viable Campylobacter bacteria on chicken carcasses, using real-time PCR and propidium monoazide treatment, as a tool for quantitative risk assessment. Appl Environ Microbiol 76: 5097-5104.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5097-5104
    • Josefsen, M.H.1    Löfström, C.2    Hansen, T.B.3    Christensen, L.S.4    Olsen, J.E.5    Hoorfar, J.6
  • 32
    • 0028120046 scopus 로고
    • A distinctive property of Tth DNA polymerase: Enzymatic amplification in the presence of phenol
    • Katcher HL, Schwartz I (1994) A distinctive property of Tth DNA polymerase: Enzymatic amplification in the presence of phenol. Biotechniques 16: 84-92.
    • (1994) Biotechniques , vol.16 , pp. 84-92
    • Katcher, H.L.1    Schwartz, I.2
  • 33
    • 0032978821 scopus 로고    scopus 로고
    • Proviral load determination of different feline immunodeficiency virus isolates using real-time polymerase chain reaction: influence of mismatches on quantification
    • Klein D, Janda P, Steinborn R, Müller M, Salmons B, Günzburg WH (1999) Proviral load determination of different feline immunodeficiency virus isolates using real-time polymerase chain reaction: influence of mismatches on quantification. Electrophoresis 20: 291-299.
    • (1999) Electrophoresis , vol.20 , pp. 291-299
    • Klein, D.1    Janda, P.2    Steinborn, R.3    Müller, M.4    Salmons, B.5    Günzburg, W.H.6
  • 34
    • 64849090618 scopus 로고    scopus 로고
    • Unsuitable distinction between viable and dead Staphylococcus aureus and Staphylococcus epidermidis by ethidium bromide monoazide
    • Kobayashi H, Oethinger M, Tuohy MJ, Hall GS, Bauer TW (2009) Unsuitable distinction between viable and dead Staphylococcus aureus and Staphylococcus epidermidis by ethidium bromide monoazide. Lett Appl Microbiol 48: 633-638.
    • (2009) Lett Appl Microbiol , vol.48 , pp. 633-638
    • Kobayashi, H.1    Oethinger, M.2    Tuohy, M.J.3    Hall, G.S.4    Bauer, T.W.5
  • 35
    • 33745745782 scopus 로고    scopus 로고
    • Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors
    • Kontanis EJ, Reed FA (2006) Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors. J. Forensic Sci 51: 795-804.
    • (2006) J. Forensic Sci , vol.51 , pp. 795-804
    • Kontanis, E.J.1    Reed, F.A.2
  • 36
    • 0030048084 scopus 로고    scopus 로고
    • Relief of ampli fi cation inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader CA (1996) Relief of ampli fi cation inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl Environ Microbiol 62: 1102-1106.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 37
    • 0030985879 scopus 로고    scopus 로고
    • Removal of PCR inhibitors from human faecal samples through the use of an aqueous two phase system for sample preparation prior to PCR
    • Lantz PG, Matsson M, Wadström T, Rådström P (1997) Removal of PCR inhibitors from human faecal samples through the use of an aqueous two phase system for sample preparation prior to PCR. J Microbiol Methods 28: 159-167.
    • (1997) J Microbiol Methods , vol.28 , pp. 159-167
    • Lantz, P.G.1    Matsson, M.2    Wadström, T.3    Rådström, P.4
  • 39
    • 79956224521 scopus 로고    scopus 로고
    • Rapid identification and quantification of campylobacter coli and campylobacter jejuni by real-time PCR in pure cultures and in complex samples
    • Leblanc-Maridor M, Beaudeau F, Seegers H, Denis M, Belloc C (2011) Rapid identification and quantification of campylobacter coli and campylobacter jejuni by real-time PCR in pure cultures and in complex samples. BMC Microbiol 11: 113.
    • (2011) BMC Microbiol , vol.11 , pp. 113
    • Leblanc-Maridor, M.1    Beaudeau, F.2    Seegers, H.3    Denis, M.4    Belloc, C.5
  • 41
    • 33749560109 scopus 로고    scopus 로고
    • Absolute quantification of gene expression in biomaterials research using real-time PCR
    • Leong DT, Gupta A, Bai HF, Wan G, Yoong LF, Too HP (2007) Absolute quantification of gene expression in biomaterials research using real-time PCR. Biomaterials 28: 203-210.
    • (2007) Biomaterials , vol.28 , pp. 203-210
    • Leong, D.T.1    Gupta, A.2    Bai, H.F.3    Wan, G.4    Yoong, L.F.5    Too, H.P.6
  • 42
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T (1993) Instability and decay of the primary structure of DNA. Nature 362: 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 43
    • 0036499301 scopus 로고    scopus 로고
    • A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics
    • Liu W, Saint DA (2002) A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics. Anal Biochem 302: 52-59.
    • (2002) Anal Biochem , vol.302 , pp. 52-59
    • Liu, W.1    Saint, D.A.2
  • 45
    • 79953058634 scopus 로고    scopus 로고
    • Culture independent quantification of Salmonella enterica in carcass gauze swabs by flotation prior to real-time PCR
    • Löfström C, Schelin J, Norling B, Vigre H, Hoorfar J, Rådström P (2011) Culture independent quantification of Salmonella enterica in carcass gauze swabs by flotation prior to real-time PCR. Int J Food Micro 145: 103-109.
    • (2011) Int J Food Micro , vol.145 , pp. 103-109
    • Löfström, C.1    Schelin, J.2    Norling, B.3    Vigre, H.4    Hoorfar, J.5    Rådström, P.6
  • 47
    • 8644265908 scopus 로고    scopus 로고
    • Detection of Campylobacter spp. in chicken fecal samples by realtime PCR
    • Lund M, Nordentoft S, Pedersen K, Madsen M (2004) Detection of Campylobacter spp. in chicken fecal samples by realtime PCR. J Clin Microbiol 42: 5125-5132.
    • (2004) J Clin Microbiol , vol.42 , pp. 5125-5132
    • Lund, M.1    Nordentoft, S.2    Pedersen, K.3    Madsen, M.4
  • 48
    • 0033829925 scopus 로고    scopus 로고
    • Optimising recovery of Campylobacter spp. from the lower porcine gastrointestinal tract
    • Madden RH, Moran L, Scates P (2000) Optimising recovery of Campylobacter spp. from the lower porcine gastrointestinal tract. J Microbiol Methods 42: 115-119.
    • (2000) J Microbiol Methods , vol.42 , pp. 115-119
    • Madden, R.H.1    Moran, L.2    Scates, P.3
  • 49
    • 40549121929 scopus 로고    scopus 로고
    • Enumeration of salmonella bacteria in food and feed samples by real-time PCR for quantitative microbial risk assessment
    • Malorny B, Löfström C, Wagner M, Kramer N, Hoorfar J (2008) Enumeration of salmonella bacteria in food and feed samples by real-time PCR for quantitative microbial risk assessment. Appl Environ Microbiol 74: 1299-1304.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1299-1304
    • Malorny, B.1    Löfström, C.2    Wagner, M.3    Kramer, N.4    Hoorfar, J.5
  • 50
    • 33846292587 scopus 로고    scopus 로고
    • Evaluation of real-time PCR targeting the 16S rRNA and recA genes for the enumeration of bifidobacteria in probiotic products
    • Masco L, Vanhoutte T, Temmerman R, Swings J, Huys G (2007) Evaluation of real-time PCR targeting the 16S rRNA and recA genes for the enumeration of bifidobacteria in probiotic products. Int J Food Microbiol 113: 351-357.
    • (2007) Int J Food Microbiol , vol.113 , pp. 351-357
    • Masco, L.1    Vanhoutte, T.2    Temmerman, R.3    Swings, J.4    Huys, G.5
  • 52
    • 0032055308 scopus 로고    scopus 로고
    • Occurrence of thermophilic Campylobacter spp. in porcine liver in Northern Ireland
    • Moore JE, Madden RH (1998) Occurrence of thermophilic Campylobacter spp. in porcine liver in Northern Ireland. J Food Prot 61: 409-413.
    • (1998) J Food Prot , vol.61 , pp. 409-413
    • Moore, J.E.1    Madden, R.H.2
  • 53
    • 36148991501 scopus 로고    scopus 로고
    • Effect of washing with a high pressure water spray on removal of Listeria innocua from Gorgonzola cheese rind
    • Mucchetti G, Bonvini B, Francolino S, Neviani E, Carminati D (2008) Effect of washing with a high pressure water spray on removal of Listeria innocua from Gorgonzola cheese rind. Food Control 19: 521-525.
    • (2008) Food Control , vol.19 , pp. 521-525
    • Mucchetti, G.1    Bonvini, B.2    Francolino, S.3    Neviani, E.4    Carminati, D.5
  • 54
    • 35748981524 scopus 로고    scopus 로고
    • Construction and evaluation of a microbiological positive process internal control for PCR-based examination of food samples for Listeria monocytogenes and Salmonella enterica
    • Murphy NM, McLauchlin J, Ohai C, Grant KA (2007) Construction and evaluation of a microbiological positive process internal control for PCR-based examination of food samples for Listeria monocytogenes and Salmonella enterica. Int J Food Microbiol 120: 110-119.
    • (2007) Int J Food Microbiol , vol.120 , pp. 110-119
    • Murphy, N.M.1    McLauchlin, J.2    Ohai, C.3    Grant, K.A.4
  • 55
    • 0004216524 scopus 로고    scopus 로고
    • Campylobacter
    • 2nd, Ed., ASM Press (American Society for Microbiology), Washington, DC
    • Nachamkin I, Blaser MJ (2000) Campylobacter, 2nd, Ed., ASM Press (American Society for Microbiology), Washington, DC.
    • (2000)
    • Nachamkin, I.1    Blaser, M.J.2
  • 57
    • 33645293441 scopus 로고    scopus 로고
    • SPUD: a quantitative PCR assay for the detection of inhibitors in nucleic acid preparations
    • Nolan T, Hands RE, Ogunkolade W, Bustin SA (2006) SPUD: a quantitative PCR assay for the detection of inhibitors in nucleic acid preparations. Anal Biochem 351: 308-310.
    • (2006) Anal Biochem , vol.351 , pp. 308-310
    • Nolan, T.1    Hands, R.E.2    Ogunkolade, W.3    Bustin, S.A.4
  • 59
    • 1642497870 scopus 로고    scopus 로고
    • Removal of PCR inhibitors using dielectrophoresis as a selective filter in a microsystem
    • Perch-Nielsen IR, Bang DD, Poulsen CR, El-Ali J, Wolff A (2003) Removal of PCR inhibitors using dielectrophoresis as a selective filter in a microsystem. Lab Chip 3: 212-216.
    • (2003) Lab Chip , vol.3 , pp. 212-216
    • Perch-Nielsen, I.R.1    Bang, D.D.2    Poulsen, C.R.3    El-Ali, J.4    Wolff, A.5
  • 60
    • 79955831883 scopus 로고    scopus 로고
    • Recent advances in quantitative PCR (qPCR) applications in food microbiology
    • Postollec F, Falentin H, Pavan S, Combrisson J, Sohier D (2011) Recent advances in quantitative PCR (qPCR) applications in food microbiology. Food Microbiol 28: 848-861.
    • (2011) Food Microbiol , vol.28 , pp. 848-861
    • Postollec, F.1    Falentin, H.2    Pavan, S.3    Combrisson, J.4    Sohier, D.5
  • 64
    • 0026678203 scopus 로고
    • Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA extraction solutions
    • Rossen L, Nørskov P, Holmstrøm K, Rasmussen OF (1992) Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA extraction solutions. Int J Food Microbiol 17: 37-45.
    • (1992) Int J Food Microbiol , vol.17 , pp. 37-45
    • Rossen, L.1    Nørskov, P.2    Holmstrøm, K.3    Rasmussen, O.F.4
  • 65
    • 17044425007 scopus 로고    scopus 로고
    • Evaluation of DNA extraction methods from mouse stomachs for the quantification of H. pylori by real-time PCR
    • Roussel Y, Wilks M, Harris A, Mein C, Tabaqchali S (2005) Evaluation of DNA extraction methods from mouse stomachs for the quantification of H. pylori by real-time PCR. J Microbiol Methods 62: 71-81.
    • (2005) J Microbiol Methods , vol.62 , pp. 71-81
    • Roussel, Y.1    Wilks, M.2    Harris, A.3    Mein, C.4    Tabaqchali, S.5
  • 66
    • 2342597065 scopus 로고    scopus 로고
    • Direct real-time PCR quantification of Campylobacter jejuni in chicken fecal and cecal samples by integrated cell concentration and DNA purification
    • Rudi K, Hoidal HK, Katla T, Johansen BK, Nordal J, Jakobsen KS (2004) Direct real-time PCR quantification of Campylobacter jejuni in chicken fecal and cecal samples by integrated cell concentration and DNA purification. Appl Environ Microbiol 70: 790-797.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 790-797
    • Rudi, K.1    Hoidal, H.K.2    Katla, T.3    Johansen, B.K.4    Nordal, J.5    Jakobsen, K.S.6
  • 67
    • 13544254304 scopus 로고    scopus 로고
    • Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples
    • Rudi K, Moen B, Drømtorp SM, Holck AL (2005) Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples. Appl Environ Microbiol 71: 1018-1024.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1018-1024
    • Rudi, K.1    Moen, B.2    Drømtorp, S.M.3    Holck, A.L.4
  • 68
    • 0344837847 scopus 로고    scopus 로고
    • Real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture
    • Sails AD, Fox AJ, Bolton FJ, Wareing DR, Greenway DL (2003) Real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture. Appl Environ Microbiol 69: 1383-1390.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1383-1390
    • Sails, A.D.1    Fox, A.J.2    Bolton, F.J.3    Wareing, D.R.4    Greenway, D.L.5
  • 70
    • 0028864668 scopus 로고
    • Identification of widespread Helicobacter hepaticus infection in feces in commercial mouse colonies by culture and PCR assay
    • Shames B, Fox JG, Dewhirst F, Yan L, Shen Z, Taylor NS (1995) Identification of widespread Helicobacter hepaticus infection in feces in commercial mouse colonies by culture and PCR assay. J Clin Microbiol 33: 2968-2972.
    • (1995) J Clin Microbiol , vol.33 , pp. 2968-2972
    • Shames, B.1    Fox, J.G.2    Dewhirst, F.3    Yan, L.4    Shen, Z.5    Taylor, N.S.6
  • 71
    • 71549131006 scopus 로고    scopus 로고
    • Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces
    • Silkie SS, Nelson KL (2009) Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces. Water Res 43: 4860-4871.
    • (2009) Water Res , vol.43 , pp. 4860-4871
    • Silkie, S.S.1    Nelson, K.L.2
  • 72
    • 0037230778 scopus 로고    scopus 로고
    • A quantitative real-time PCR method for detection of B-Lymphocyte Monoclonality by comparison of kappa and lambda Immunoglobulin Light Chain Expression
    • Ståhlberg A, Åman P, Ridell B, Mostad P, Kubista M (2003) A quantitative real-time PCR method for detection of B-Lymphocyte Monoclonality by comparison of kappa and lambda Immunoglobulin Light Chain Expression. Clin Chem 49: 51-59.
    • (2003) Clin Chem , vol.49 , pp. 51-59
    • Ståhlberg, A.1    Åman, P.2    Ridell, B.3    Mostad, P.4    Kubista, M.5
  • 73
    • 1642523569 scopus 로고    scopus 로고
    • Bacterial separation and concentration from complex sample matrices: a review
    • Stevens KA, Jaykus LA (2004) Bacterial separation and concentration from complex sample matrices: a review. Crit Rev Microbiol 30: 7-24.
    • (2004) Crit Rev Microbiol , vol.30 , pp. 7-24
    • Stevens, K.A.1    Jaykus, L.A.2
  • 74
  • 75
    • 84887316710 scopus 로고    scopus 로고
    • Stratagene, Stratagene, La Jolla, CA. Available at, Accessed 22 July 2012
    • Stratagene (2004) An introduction to Quantitative PCR. Stratagene, La Jolla, CA. Available at http://qcbs. ca/wiki/_media/stratagene_introduction_to_quantitative_pcr_methods_and_application_guide. pdf Accessed 22 July 2012.
    • (2004) An introduction to Quantitative PCR
  • 76
    • 1242338153 scopus 로고    scopus 로고
    • Comparison of two methods for the detection of hepatitis A virus in clam samples (Tapes spp.) by reverse transcription-nested PCR
    • Sunen E, Casas N, Moreno B, Zigorraga C (2004) Comparison of two methods for the detection of hepatitis A virus in clam samples (Tapes spp.) by reverse transcription-nested PCR. Intl J Food Microbiol 91: 147-154.
    • (2004) Intl J Food Microbiol , vol.91 , pp. 147-154
    • Sunen, E.1    Casas, N.2    Moreno, B.3    Zigorraga, C.4
  • 78
    • 84887318211 scopus 로고    scopus 로고
    • Thermo Fisher Scientific, Available at, Accessed on the 13th of May, 2013
    • Thermo Fisher Scientific (2011). T042-TECHNICAL BULLETIN NanoDrop Spectrophotometers Assessment of Nucleic Acid Purity. Available at: http://www. nanodrop. com/Library/T042-NanoDrop-Spectrophotometers-Nucleic-Acid-Purity-Ratios. pdf Accessed on the 13th of May, 2013.
    • (2011) T042-TECHNICAL BULLETIN NanoDrop Spectrophotometers Assessment of Nucleic Acid Purity
  • 79
    • 4344600738 scopus 로고    scopus 로고
    • Inhibition of PCR amplification by phytic acid, and treatment of bovine fecal specimens with phytase to reduce inhibition
    • Thornton CG, Passen S (2004) Inhibition of PCR amplification by phytic acid, and treatment of bovine fecal specimens with phytase to reduce inhibition. J Microbiol Methods 59: 43-52.
    • (2004) J Microbiol Methods , vol.59 , pp. 43-52
    • Thornton, C.G.1    Passen, S.2
  • 80
    • 1242296154 scopus 로고    scopus 로고
    • Inhibition of real-time RT-PCR quantification due to tissue-specific contaminants
    • Tichopad A, Didier A, Pfaffl MW (2004) Inhibition of real-time RT-PCR quantification due to tissue-specific contaminants. Mol Cell Probes 18: 45-50.
    • (2004) Mol Cell Probes , vol.18 , pp. 45-50
    • Tichopad, A.1    Didier, A.2    Pfaffl, M.W.3
  • 81
    • 77949264843 scopus 로고    scopus 로고
    • Quality control for quantitative PCR based on amplification compatibility test
    • Tichopad A, Bar T, Pecen L, Kitchen RR, Kubista M, Pfaffl MW (2010) Quality control for quantitative PCR based on amplification compatibility test. Methods 50: 308-312.
    • (2010) Methods , vol.50 , pp. 308-312
    • Tichopad, A.1    Bar, T.2    Pecen, L.3    Kitchen, R.R.4    Kubista, M.5    Pfaffl, M.W.6
  • 82
    • 0032828437 scopus 로고    scopus 로고
    • PCR and the detection of microbial pathogens in water and wastewater
    • Toze S (1999) PCR and the detection of microbial pathogens in water and wastewater. Water Res 33: 3545-3556.
    • (1999) Water Res , vol.33 , pp. 3545-3556
    • Toze, S.1
  • 83
    • 67349108049 scopus 로고    scopus 로고
    • Relating Microbiological Criteria to Food Safety Objectives and Performance Objectives
    • van Schothorst M, Zwietering MH, Ross T, Buchanan RL, Cole MB (2009) Relating Microbiological Criteria to Food Safety Objectives and Performance Objectives. Food Control 20: 967-979.
    • (2009) Food Control , vol.20 , pp. 967-979
    • van Schothorst, M.1    Zwietering, M.H.2    Ross, T.3    Buchanan, R.L.4    Cole, M.B.5
  • 85
    • 0038477090 scopus 로고    scopus 로고
    • Patterns of nuclear DNA degeneration over time-a case study in historic teeth samples
    • Wandeler P, Smith S, Morin PA, Pettifor RA, Funk SM (2003) Patterns of nuclear DNA degeneration over time-a case study in historic teeth samples. Mol Ecol 12: 1087-1093.
    • (2003) Mol Ecol , vol.12 , pp. 1087-1093
    • Wandeler, P.1    Smith, S.2    Morin, P.A.3    Pettifor, R.A.4    Funk, S.M.5
  • 86
    • 0025045144 scopus 로고
    • Effect of ionic and nonionic detergents on the Taq polymerase
    • Weyant RS, Edmonds P, Swaminathan B (1990) Effect of ionic and nonionic detergents on the Taq polymerase. Biotechniques 9: 308-309.
    • (1990) Biotechniques , vol.9 , pp. 308-309
    • Weyant, R.S.1    Edmonds, P.2    Swaminathan, B.3
  • 87
    • 0142071135 scopus 로고    scopus 로고
    • A method for the absolute quantification of cDNA using real time PCR
    • Whelan JA, Russel NB, Whelan MA (2003) A method for the absolute quantification of cDNA using real time PCR. J Immunol Methods 278: 261-269.
    • (2003) J Immunol Methods , vol.278 , pp. 261-269
    • Whelan, J.A.1    Russel, N.B.2    Whelan, M.A.3
  • 88
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG (1997) Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63: 3741-3751.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 89
    • 0347723809 scopus 로고    scopus 로고
    • Impact of DNA polymerases and their buffer systems on quantitative real-time PCR
    • Wolffs P, Grage H, Hagberg O, Rådström P (2004) Impact of DNA polymerases and their buffer systems on quantitative real-time PCR. J Clin Microbiol 42: 408-411.
    • (2004) J Clin Microbiol , vol.42 , pp. 408-411
    • Wolffs, P.1    Grage, H.2    Hagberg, O.3    Rådström, P.4
  • 90
    • 12144272204 scopus 로고    scopus 로고
    • Risk assessment of falsepositive quantitative real-time PCR results in food, due to detection of DNA originating from dead cells
    • Wolffs P, Norling B, Radstrom P (2005) Risk assessment of falsepositive quantitative real-time PCR results in food, due to detection of DNA originating from dead cells. J Microbiol Methods 60: 315-323.
    • (2005) J Microbiol Methods , vol.60 , pp. 315-323
    • Wolffs, P.1    Norling, B.2    Radstrom, P.3
  • 92
    • 2442510059 scopus 로고    scopus 로고
    • Improved extraction of PCR-quality community DNA from digesta and fecal samples
    • Yu Z, Morrison M (2004) Improved extraction of PCR-quality community DNA from digesta and fecal samples. J Biotech 36: 808-812.
    • (2004) J Biotech , vol.36 , pp. 808-812
    • Yu, Z.1    Morrison, M.2
  • 93
    • 0035687710 scopus 로고    scopus 로고
    • DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract
    • Zoetendal EG, Ben-Amor K, Akkermans AD, Abee T, De Vos WM (2001) DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract. Syst Appl Microbiol 24: 405-410.
    • (2001) Syst Appl Microbiol , vol.24 , pp. 405-410
    • Zoetendal, E.G.1    Ben-Amor, K.2    Akkermans, A.D.3    Abee, T.4    De Vos, W.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.