-
1
-
-
8844263008
-
Docking and scoring in virtual screening for drug discovery: methods and applications
-
Kitchen D.B., Decornez H., Furr J.R., Bajorath J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat Rev Drug Discov 2004, 3:935-949.
-
(2004)
Nat Rev Drug Discov
, vol.3
, pp. 935-949
-
-
Kitchen, D.B.1
Decornez, H.2
Furr, J.R.3
Bajorath, J.4
-
2
-
-
4644335402
-
Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine
-
Weston A.D., Hood L. Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine. J Proteome Res 2004, 3:179-196.
-
(2004)
J Proteome Res
, vol.3
, pp. 179-196
-
-
Weston, A.D.1
Hood, L.2
-
3
-
-
18344396306
-
Biochemical applications of mass spectrometry in pharmaceutical drug discovery
-
Geoghegan K.F., Kelly M.A. Biochemical applications of mass spectrometry in pharmaceutical drug discovery. Mass Spectrom Rev 2005, 24:347-366.
-
(2005)
Mass Spectrom Rev
, vol.24
, pp. 347-366
-
-
Geoghegan, K.F.1
Kelly, M.A.2
-
4
-
-
33644889108
-
Allosteric inhibitors of Bcr-abl-dependent cell proliferation
-
Adrián F.J., Ding Q., Sim T., Velentza A., Sloan C., Liu Y., Zhang G., Hur W., Ding S., Manley P. Allosteric inhibitors of Bcr-abl-dependent cell proliferation. Nat Chem Biol 2006, 2:95-102.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 95-102
-
-
Adrián, F.J.1
Ding, Q.2
Sim, T.3
Velentza, A.4
Sloan, C.5
Liu, Y.6
Zhang, G.7
Hur, W.8
Ding, S.9
Manley, P.10
-
5
-
-
9644302954
-
A general technique to rank protein-ligand binding affinities and determine allosteric versus direct binding site competition in compound mixtures
-
Annis D.A., Nazef N., Chuang C.-C., Scott M.P., Nash H.M. A general technique to rank protein-ligand binding affinities and determine allosteric versus direct binding site competition in compound mixtures. J Am Chem Soc 2004, 126:15495-15503.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 15495-15503
-
-
Annis, D.A.1
Nazef, N.2
Chuang, C.-C.3
Scott, M.P.4
Nash, H.M.5
-
6
-
-
0041317054
-
Electrospray wings for molecular elephants (Nobel lecture)
-
Fenn J.B. Electrospray wings for molecular elephants (Nobel lecture). Angew Chem Int Ed 2003, 42:3871-3894.
-
(2003)
Angew Chem Int Ed
, vol.42
, pp. 3871-3894
-
-
Fenn, J.B.1
-
7
-
-
47249124173
-
A multi-angular mass spectrometric view at cyclic nucleotide dependent protein kinases: in vivo characterization and structure/function relationships
-
Scholten A., Aye T.T., Heck A.J. A multi-angular mass spectrometric view at cyclic nucleotide dependent protein kinases: in vivo characterization and structure/function relationships. Mass Spectrom Rev 2008, 27:331-353.
-
(2008)
Mass Spectrom Rev
, vol.27
, pp. 331-353
-
-
Scholten, A.1
Aye, T.T.2
Heck, A.J.3
-
9
-
-
2542530042
-
The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures
-
Wang R., Fang X., Lu Y., Wang S. The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures. J Med Chem 2004, 47:2977-2980.
-
(2004)
J Med Chem
, vol.47
, pp. 2977-2980
-
-
Wang, R.1
Fang, X.2
Lu, Y.3
Wang, S.4
-
10
-
-
33747030845
-
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
-
Rifai N., Gillette M.A., Carr S.A. Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nat Biotechnol 2006, 24:971-983.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
11
-
-
34548215681
-
Protein complexes in the gas phase: technology for structural genomics and proteomics
-
Benesch J.L., Ruotolo B.T., Simmons D.A., Robinson C.V. Protein complexes in the gas phase: technology for structural genomics and proteomics. Chem Rev 2007, 107:3544-3567.
-
(2007)
Chem Rev
, vol.107
, pp. 3544-3567
-
-
Benesch, J.L.1
Ruotolo, B.T.2
Simmons, D.A.3
Robinson, C.V.4
-
12
-
-
0001413545
-
Detection of noncovalent receptor ligand complexes by mass spectrometry
-
Ganem B., Li Y.T., Henion J.D. Detection of noncovalent receptor ligand complexes by mass spectrometry. J Am Chem Soc 1991, 113:6294-6296.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 6294-6296
-
-
Ganem, B.1
Li, Y.T.2
Henion, J.D.3
-
13
-
-
0001401150
-
Observation of the heme globin complex in native myoglobin by electrospray-ionization mass spectrometry
-
Katta V., Chait B.T. Observation of the heme globin complex in native myoglobin by electrospray-ionization mass spectrometry. J Am Chem Soc 1991, 113:8534-8535.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 8534-8535
-
-
Katta, V.1
Chait, B.T.2
-
14
-
-
0036312378
-
Qualitative characterization of biomolecular zinc complexes by collisionally induced dissociation
-
Afonso C., Hathout Y., Fenselau C. Qualitative characterization of biomolecular zinc complexes by collisionally induced dissociation. J Mass Spectrom 2002, 37:755-759.
-
(2002)
J Mass Spectrom
, vol.37
, pp. 755-759
-
-
Afonso, C.1
Hathout, Y.2
Fenselau, C.3
-
15
-
-
37549038284
-
CGMP-binding prepares PKG for substrate binding by disclosing the C-terminal domain
-
Alverdi V., Mazon H., Versluis C., Hemrika W., Esposito G., van den Heuvel R., Scholten A., Heck A.J. cGMP-binding prepares PKG for substrate binding by disclosing the C-terminal domain. J Mol Biol 2008, 375:1380-1393.
-
(2008)
J Mol Biol
, vol.375
, pp. 1380-1393
-
-
Alverdi, V.1
Mazon, H.2
Versluis, C.3
Hemrika, W.4
Esposito, G.5
van den Heuvel, R.6
Scholten, A.7
Heck, A.J.8
-
16
-
-
35348832312
-
Affinity selection-mass spectrometry screening techniques for small molecule drug discovery
-
Annis D.A., Nickbarg E., Yang X., Ziebell M.R., Whitehurst C.E. Affinity selection-mass spectrometry screening techniques for small molecule drug discovery. Curr Opin Chem Biol 2007, 11:518-526.
-
(2007)
Curr Opin Chem Biol
, vol.11
, pp. 518-526
-
-
Annis, D.A.1
Nickbarg, E.2
Yang, X.3
Ziebell, M.R.4
Whitehurst, C.E.5
-
17
-
-
33745652264
-
Applications of ESI-MS in drug discovery: interrogation of noncovalent complexes
-
Hofstadler S.A., Sannes-Lowery K.A. Applications of ESI-MS in drug discovery: interrogation of noncovalent complexes. Nat Rev Drug Discov 2006, 5:585-595.
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 585-595
-
-
Hofstadler, S.A.1
Sannes-Lowery, K.A.2
-
18
-
-
0141958921
-
Influence of solution and gas phase processes on protein-carbohydrate binding affinities determined by nanoelectrospray Fourier transform ion cyclotron resonance mass spectrometry
-
Wang W., Kitova E.N., Klassen J.S. Influence of solution and gas phase processes on protein-carbohydrate binding affinities determined by nanoelectrospray Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem 2003, 75:4945-4955.
-
(2003)
Anal Chem
, vol.75
, pp. 4945-4955
-
-
Wang, W.1
Kitova, E.N.2
Klassen, J.S.3
-
19
-
-
77958179943
-
Quantifying labile protein-ligand interactions using electrospray ionization mass spectrometry
-
El-Hawiet A., Kitova E.N., Liu L., Klassen J.S. Quantifying labile protein-ligand interactions using electrospray ionization mass spectrometry. J Am Soc Mass Spectrom 2010, 21:1893-1899.
-
(2010)
J Am Soc Mass Spectrom
, vol.21
, pp. 1893-1899
-
-
El-Hawiet, A.1
Kitova, E.N.2
Liu, L.3
Klassen, J.S.4
-
20
-
-
80655131110
-
Thermodynamic analysis of protein-ligand interactions in complex biological mixtures using a shotgun proteomics approach
-
DeArmond P.D., Xu Y., Strickland E.C., Daniels K.G., Fitzgerald M.C. Thermodynamic analysis of protein-ligand interactions in complex biological mixtures using a shotgun proteomics approach. J Proteome Res 2011, 10:4948-4958.
-
(2011)
J Proteome Res
, vol.10
, pp. 4948-4958
-
-
DeArmond, P.D.1
Xu, Y.2
Strickland, E.C.3
Daniels, K.G.4
Fitzgerald, M.C.5
-
21
-
-
77954653768
-
Combinatorial electrostatic collision-induced dissociative chemical cross-linking reagents for probing protein surface topology
-
Liu F., Goshe M.B. Combinatorial electrostatic collision-induced dissociative chemical cross-linking reagents for probing protein surface topology. Anal Chem 2010, 82:6215-6223.
-
(2010)
Anal Chem
, vol.82
, pp. 6215-6223
-
-
Liu, F.1
Goshe, M.B.2
-
22
-
-
0037076525
-
Probing the topology of the glycine receptor by chemical modification coupled to mass spectrometry
-
Leite J.F., Cascio M. Probing the topology of the glycine receptor by chemical modification coupled to mass spectrometry. Biochemistry 2002, 41:6140-6148.
-
(2002)
Biochemistry
, vol.41
, pp. 6140-6148
-
-
Leite, J.F.1
Cascio, M.2
-
23
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
Sinz A. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. Mass Spectrom Rev 2006, 25:663-682.
-
(2006)
Mass Spectrom Rev
, vol.25
, pp. 663-682
-
-
Sinz, A.1
-
24
-
-
0031082985
-
Ion-molecule reactions as probes of gas-phase structures of peptides and proteins
-
Green M.K., Lebrilla C.B. Ion-molecule reactions as probes of gas-phase structures of peptides and proteins. Mass Spectrom Rev 1997, 16:53-71.
-
(1997)
Mass Spectrom Rev
, vol.16
, pp. 53-71
-
-
Green, M.K.1
Lebrilla, C.B.2
-
25
-
-
1442333529
-
Modeling data from titration, amide H/D exchange, and mass spectrometry to obtain protein-ligand binding constants
-
Zhu M.M., Rempel D.L., Gross M.L. Modeling data from titration, amide H/D exchange, and mass spectrometry to obtain protein-ligand binding constants. J Am Soc Mass Spectrom 2004, 15:388-397.
-
(2004)
J Am Soc Mass Spectrom
, vol.15
, pp. 388-397
-
-
Zhu, M.M.1
Rempel, D.L.2
Gross, M.L.3
-
26
-
-
11844258744
-
PLIMSTEX: a novel mass spectrometric method for the quantification of protein-ligand interactions in solution
-
Zhu M.M., Chitta R., Gross M.L. PLIMSTEX: a novel mass spectrometric method for the quantification of protein-ligand interactions in solution. Int J Mass spectrom 2005, 240:213-220.
-
(2005)
Int J Mass spectrom
, vol.240
, pp. 213-220
-
-
Zhu, M.M.1
Chitta, R.2
Gross, M.L.3
-
27
-
-
39149137577
-
Ion mobility-mass spectrometry
-
Kanu A.B., Dwivedi P., Tam M., Matz L., Hill H.H. Ion mobility-mass spectrometry. J Mass Spectrom 2008, 43:1-22.
-
(2008)
J Mass Spectrom
, vol.43
, pp. 1-22
-
-
Kanu, A.B.1
Dwivedi, P.2
Tam, M.3
Matz, L.4
Hill, H.H.5
-
28
-
-
11844253147
-
Ion mobility-mass spectrometry: a new paradigm for proteomics
-
McLean J.A., Ruotolo B.T., Gillig K.J., Russell D.H. Ion mobility-mass spectrometry: a new paradigm for proteomics. Int J Mass spectrom 2005, 240:301-315.
-
(2005)
Int J Mass spectrom
, vol.240
, pp. 301-315
-
-
McLean, J.A.1
Ruotolo, B.T.2
Gillig, K.J.3
Russell, D.H.4
-
29
-
-
23744458105
-
Developing liquid chromatography ion mobility mass spectrometry techniques
-
Valentine S.J., Liu X.Y., Plasencia M.D., Hilderbrand A.E., Kurulugama R.T., Koeniger S.L., Clemmer D.E. Developing liquid chromatography ion mobility mass spectrometry techniques. Expert Rev Proteom 2005, 2:553-565.
-
(2005)
Expert Rev Proteom
, vol.2
, pp. 553-565
-
-
Valentine, S.J.1
Liu, X.Y.2
Plasencia, M.D.3
Hilderbrand, A.E.4
Kurulugama, R.T.5
Koeniger, S.L.6
Clemmer, D.E.7
-
30
-
-
34547885014
-
MALDI-ion mobility-TOFMS imaging of lipids in rat brain tissue
-
Jackson S.N., Ugarov M., Egan T., Post J.D., Langlais D., Albert Schultz J., Woods A.S. MALDI-ion mobility-TOFMS imaging of lipids in rat brain tissue. J Mass Spectrom 2007, 42:1093-1098.
-
(2007)
J Mass Spectrom
, vol.42
, pp. 1093-1098
-
-
Jackson, S.N.1
Ugarov, M.2
Egan, T.3
Post, J.D.4
Langlais, D.5
Albert Schultz, J.6
Woods, A.S.7
-
31
-
-
34547881888
-
Profiling and imaging of tissues by imaging ion mobility-mass spectrometry
-
McLean J.A., Ridenour W.B., Caprioli R.M. Profiling and imaging of tissues by imaging ion mobility-mass spectrometry. J Mass Spectrom 2007, 42:1099-1105.
-
(2007)
J Mass Spectrom
, vol.42
, pp. 1099-1105
-
-
McLean, J.A.1
Ridenour, W.B.2
Caprioli, R.M.3
-
32
-
-
56149087277
-
Native mass spectrometry: a bridge between interactomics and structural biology
-
Heck A.J. Native mass spectrometry: a bridge between interactomics and structural biology. Nat Methods 2008, 5:927-933.
-
(2008)
Nat Methods
, vol.5
, pp. 927-933
-
-
Heck, A.J.1
-
33
-
-
84861145145
-
Mass spectrometry based tools to investigate protein-ligand interactions for drug discovery
-
Pacholarz K.J., Garlish R.A., Taylor R.J., Barran P.E. Mass spectrometry based tools to investigate protein-ligand interactions for drug discovery. Chem Soc Rev 2012, 41:4335-4355.
-
(2012)
Chem Soc Rev
, vol.41
, pp. 4335-4355
-
-
Pacholarz, K.J.1
Garlish, R.A.2
Taylor, R.J.3
Barran, P.E.4
-
35
-
-
28844474910
-
Evidence for macromolecular protein rings in the absence of bulk water
-
Ruotolo B.T., Giles K., Campuzano I., Sandercock A.M., Bateman R.H., Robinson C.V. Evidence for macromolecular protein rings in the absence of bulk water. Sci Signal 2005, 310:1658.
-
(2005)
Sci Signal
, vol.310
, pp. 1658
-
-
Ruotolo, B.T.1
Giles, K.2
Campuzano, I.3
Sandercock, A.M.4
Bateman, R.H.5
Robinson, C.V.6
-
36
-
-
84873865528
-
Protein structure in the gas phase: the influence of side-chain microsolvation
-
Warnke S., von Helden G., Pagel K. Protein structure in the gas phase: the influence of side-chain microsolvation. J Am Chem Soc 2013, 135:1177-1180.
-
(2013)
J Am Chem Soc
, vol.135
, pp. 1177-1180
-
-
Warnke, S.1
von Helden, G.2
Pagel, K.3
-
37
-
-
63149131553
-
Chaperonin complexes monitored by ion mobility mass spectrometry
-
van Duijn E., Barendregt A., Synowsky S., Versluis C., Heck A. Chaperonin complexes monitored by ion mobility mass spectrometry. J Am Ceram Soc 2009, 131:1452-1459.
-
(2009)
J Am Ceram Soc
, vol.131
, pp. 1452-1459
-
-
van Duijn, E.1
Barendregt, A.2
Synowsky, S.3
Versluis, C.4
Heck, A.5
-
39
-
-
33846811132
-
An investigation of the mobility separation of some peptide and protein ions using a new hybrid quadrupole/travelling wave IMS/oa-ToF instrument
-
Pringle S.D., Giles K., Wildgoose J.L., Williams J.P., Slade S.E., Thalassinos K., Bateman R.H., Bowers M.T., Scrivens J.H. An investigation of the mobility separation of some peptide and protein ions using a new hybrid quadrupole/travelling wave IMS/oa-ToF instrument. Int J Mass spectrom 2007, 261:1-12.
-
(2007)
Int J Mass spectrom
, vol.261
, pp. 1-12
-
-
Pringle, S.D.1
Giles, K.2
Wildgoose, J.L.3
Williams, J.P.4
Slade, S.E.5
Thalassinos, K.6
Bateman, R.H.7
Bowers, M.T.8
Scrivens, J.H.9
-
40
-
-
34249947523
-
Intermolecular interactions in biomolecular systems examined by mass spectrometry
-
Wyttenbach T., Bowers M.T. Intermolecular interactions in biomolecular systems examined by mass spectrometry. Annu Rev Phys Chem 2007, 58:511-533.
-
(2007)
Annu Rev Phys Chem
, vol.58
, pp. 511-533
-
-
Wyttenbach, T.1
Bowers, M.T.2
-
41
-
-
57449100366
-
Biomolecule analysis by ion mobility spectrometry
-
Bohrer B.C., Merenbloom S.I., Koeniger S.L., Hilderbrand A.E., Clemmer D.E. Biomolecule analysis by ion mobility spectrometry. Annu Rev Analyt Chem 2008, 1:293-327.
-
(2008)
Annu Rev Analyt Chem
, vol.1
, pp. 293-327
-
-
Bohrer, B.C.1
Merenbloom, S.I.2
Koeniger, S.L.3
Hilderbrand, A.E.4
Clemmer, D.E.5
-
42
-
-
34548426979
-
The role of mass spectrometry in structure elucidation of dynamic protein complexes
-
Sharon M., Robinson C.V. The role of mass spectrometry in structure elucidation of dynamic protein complexes. Annu Rev Biochem 2007, 76:167-193.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 167-193
-
-
Sharon, M.1
Robinson, C.V.2
-
43
-
-
0035476451
-
Thermal decomposition of a gaseous multiprotein complex studied by blackbody infrared radiative dissociation, investigating the origin of the asymmetric dissociation behavior
-
Felitsyn N., Kitova E.N., Klassen J.S. Thermal decomposition of a gaseous multiprotein complex studied by blackbody infrared radiative dissociation, investigating the origin of the asymmetric dissociation behavior. Anal Chem 2001, 73:4647-4661.
-
(2001)
Anal Chem
, vol.73
, pp. 4647-4661
-
-
Felitsyn, N.1
Kitova, E.N.2
Klassen, J.S.3
-
44
-
-
4744373182
-
Further studies on the origins of asymmetric charge partitioning in protein homodimers
-
Jurchen J.C., Garcia D.E., Williams E.R. Further studies on the origins of asymmetric charge partitioning in protein homodimers. J Am Soc Mass Spectrom 2004, 15:1408-1415.
-
(2004)
J Am Soc Mass Spectrom
, vol.15
, pp. 1408-1415
-
-
Jurchen, J.C.1
Garcia, D.E.2
Williams, E.R.3
-
45
-
-
0037420384
-
Origin of asymmetric charge partitioning in the dissociation of gas-phase protein homodimers
-
Jurchen J.C., Williams E.R. Origin of asymmetric charge partitioning in the dissociation of gas-phase protein homodimers. J Am Chem Soc 2003, 125:2817-2826.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 2817-2826
-
-
Jurchen, J.C.1
Williams, E.R.2
-
46
-
-
0030913630
-
Conformations, unfolding, and refolding of apomyoglobin in vacuum: an activation barrier for gas-phase protein folding
-
Shelimov K.B., Jarrold M.F. Conformations, unfolding, and refolding of apomyoglobin in vacuum: an activation barrier for gas-phase protein folding. J Am Chem Soc 1997, 119:2987-2994.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 2987-2994
-
-
Shelimov, K.B.1
Jarrold, M.F.2
-
47
-
-
60649094510
-
Collisional activation of protein complexes: picking up the pieces
-
Benesch J.L. Collisional activation of protein complexes: picking up the pieces. J Am Soc Mass Spectrom 2009, 20:341-348.
-
(2009)
J Am Soc Mass Spectrom
, vol.20
, pp. 341-348
-
-
Benesch, J.L.1
-
48
-
-
0033620367
-
Thermal unfolding of unsolvated cytochrome c: experiment and molecular dynamics simulations
-
Mao Y., Woenckhaus J., Kolafa J., Ratner M.A., Jarrold M.F. Thermal unfolding of unsolvated cytochrome c: experiment and molecular dynamics simulations. J Am Chem Soc 1999, 121:2712-2721.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 2712-2721
-
-
Mao, Y.1
Woenckhaus, J.2
Kolafa, J.3
Ratner, M.A.4
Jarrold, M.F.5
-
49
-
-
36749088906
-
Determining the architectures of macromolecular assemblies
-
Alber F., Dokudovskaya S., Veenhoff L.M., Zhang W., Kipper J., Devos D., Suprapto A., Karni-Schmidt O., Williams R., Chait B.T. Determining the architectures of macromolecular assemblies. Nature 2007, 450:683-694.
-
(2007)
Nature
, vol.450
, pp. 683-694
-
-
Alber, F.1
Dokudovskaya, S.2
Veenhoff, L.M.3
Zhang, W.4
Kipper, J.5
Devos, D.6
Suprapto, A.7
Karni-Schmidt, O.8
Williams, R.9
Chait, B.T.10
-
50
-
-
84874609836
-
Insights into antiamyloidogenic properties of the green tea extract (-)-epigallocatechin-3-gallate toward metal-associated amyloid-β species
-
Hyung S.-J., DeToma A.S., Brender J.R., Lee S., Vivekanandan S., Kochi A., Choi J.-S., Ramamoorthy A., Ruotolo B.T., Lim M.H. Insights into antiamyloidogenic properties of the green tea extract (-)-epigallocatechin-3-gallate toward metal-associated amyloid-β species. Proc Natl Acad Sci U S A 2013, 110:3743-3748.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 3743-3748
-
-
Hyung, S.-J.1
DeToma, A.S.2
Brender, J.R.3
Lee, S.4
Vivekanandan, S.5
Kochi, A.6
Choi, J.-S.7
Ramamoorthy, A.8
Ruotolo, B.T.9
Lim, M.H.10
-
51
-
-
33749832945
-
Elucidating amyloid β-protein folding and assembly: a multidisciplinary approach
-
Teplow D.B., Lazo N.D., Bitan G., Bernstein S., Wyttenbach T., Bowers M.T., Baumketner A., Shea J.-E., Urbanc B., Cruz L. Elucidating amyloid β-protein folding and assembly: a multidisciplinary approach. Acc Chem Res 2006, 39:635-645.
-
(2006)
Acc Chem Res
, vol.39
, pp. 635-645
-
-
Teplow, D.B.1
Lazo, N.D.2
Bitan, G.3
Bernstein, S.4
Wyttenbach, T.5
Bowers, M.T.6
Baumketner, A.7
Shea, J.-E.8
Urbanc, B.9
Cruz, L.10
-
52
-
-
84878105806
-
Advances in ion mobility spectrometry-mass spectrometry reveal key insights into amyloid assembly
-
Woods L., Radford S., Ashcroft A. Advances in ion mobility spectrometry-mass spectrometry reveal key insights into amyloid assembly. Biochim Biophys Acta (BBA)-Prot Proteom 2012, 1834:1257-1268.
-
(2012)
Biochim Biophys Acta (BBA)-Prot Proteom
, vol.1834
, pp. 1257-1268
-
-
Woods, L.1
Radford, S.2
Ashcroft, A.3
-
53
-
-
80052970179
-
Ligand binding to distinct states diverts aggregation of an amyloid-forming protein
-
Woods L.A., Platt G.W., Hellewell A.L., Hewitt E.W., Homans S.W., Ashcroft A.E., Radford S.E. Ligand binding to distinct states diverts aggregation of an amyloid-forming protein. Nat Chem Biol 2011, 7:730-739.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 730-739
-
-
Woods, L.A.1
Platt, G.W.2
Hellewell, A.L.3
Hewitt, E.W.4
Homans, S.W.5
Ashcroft, A.E.6
Radford, S.E.7
-
54
-
-
44649150563
-
Subunit architecture of intact protein complexes from mass spectrometry and homology modeling
-
Taverner T., Hernández H., Sharon M., Ruotolo B.T., Matak-Vinković D., Devos D., Russell R.B., Robinson C.V. Subunit architecture of intact protein complexes from mass spectrometry and homology modeling. Acc Chem Res 2008, 41:617-627.
-
(2008)
Acc Chem Res
, vol.41
, pp. 617-627
-
-
Taverner, T.1
Hernández, H.2
Sharon, M.3
Ruotolo, B.T.4
Matak-Vinković, D.5
Devos, D.6
Russell, R.B.7
Robinson, C.V.8
-
55
-
-
77957784477
-
Integrating ion mobility mass spectrometry with molecular modelling to determine the architecture of multiprotein complexes
-
Politis A., Park A.Y., Hyung S.-J., Barsky D., Ruotolo B.T., Robinson C.V. Integrating ion mobility mass spectrometry with molecular modelling to determine the architecture of multiprotein complexes. PLoS ONE 2010, 5:e12080.
-
(2010)
PLoS ONE
, vol.5
-
-
Politis, A.1
Park, A.Y.2
Hyung, S.-J.3
Barsky, D.4
Ruotolo, B.T.5
Robinson, C.V.6
-
56
-
-
0027446259
-
Coexisting stable conformations of gaseous protein ions
-
Suckau D., Shi Y., Beu S.C., Senko M.W., Quinn J.P., Wampler F.M., McLafferty F.W. Coexisting stable conformations of gaseous protein ions. Proc Natl Acad Sci U S A 1993, 90:790-793.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 790-793
-
-
Suckau, D.1
Shi, Y.2
Beu, S.C.3
Senko, M.W.4
Quinn, J.P.5
Wampler, F.M.6
McLafferty, F.W.7
-
57
-
-
0030939178
-
Protein structure in vacuo: gas-phase conformations of BPTI and cytochrome c
-
Shelimov K.B., Clemmer D.E., Hudgins R.R., Jarrold M.F. Protein structure in vacuo: gas-phase conformations of BPTI and cytochrome c. J Am Chem Soc 1997, 119:2240-2248.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 2240-2248
-
-
Shelimov, K.B.1
Clemmer, D.E.2
Hudgins, R.R.3
Jarrold, M.F.4
-
58
-
-
35648957210
-
Ion mobility-mass spectrometry reveals long-lived, unfolded intermediates in the dissociation of protein complexes
-
Ruotolo B.T., Hyung S.J., Robinson P.M., Giles K., Bateman R.H., Robinson C.V. Ion mobility-mass spectrometry reveals long-lived, unfolded intermediates in the dissociation of protein complexes. Angew Chem Int Ed 2007, 46:8001-8004.
-
(2007)
Angew Chem Int Ed
, vol.46
, pp. 8001-8004
-
-
Ruotolo, B.T.1
Hyung, S.J.2
Robinson, P.M.3
Giles, K.4
Bateman, R.H.5
Robinson, C.V.6
-
59
-
-
64749105610
-
Gas-phase unfolding and disassembly reveals stability differences in ligand-bound multiprotein complexes
-
Hyung S.-J., Robinson C.V., Ruotolo B.T. Gas-phase unfolding and disassembly reveals stability differences in ligand-bound multiprotein complexes. Chem Biol 2009, 16:382-390.
-
(2009)
Chem Biol
, vol.16
, pp. 382-390
-
-
Hyung, S.-J.1
Robinson, C.V.2
Ruotolo, B.T.3
-
60
-
-
70349108740
-
Collision induced unfolding of protein ions in the gas phase studied by ion mobility-mass spectrometry: the effect of ligand binding on conformational stability
-
Hopper J.T., Oldham N.J. Collision induced unfolding of protein ions in the gas phase studied by ion mobility-mass spectrometry: the effect of ligand binding on conformational stability. J Am Soc Mass Spectrom 2009, 20:1851-1858.
-
(2009)
J Am Soc Mass Spectrom
, vol.20
, pp. 1851-1858
-
-
Hopper, J.T.1
Oldham, N.J.2
-
61
-
-
84882242085
-
Bound cations significantly stabilize the structure of multiprotein complexes in the gas phase
-
Han L., Hyung S.J., Ruotolo B.T. Bound cations significantly stabilize the structure of multiprotein complexes in the gas phase. Angew Chem Int Ed 2012, 124:5790-5793.
-
(2012)
Angew Chem Int Ed
, vol.124
, pp. 5790-5793
-
-
Han, L.1
Hyung, S.J.2
Ruotolo, B.T.3
-
62
-
-
79960579141
-
Bound anions differentially stabilize multiprotein complexes in the absence of bulk solvent
-
Han L., Hyung S.-J., Mayers J.J., Ruotolo B.T. Bound anions differentially stabilize multiprotein complexes in the absence of bulk solvent. J Am Chem Soc 2011, 133:11358-11367.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 11358-11367
-
-
Han, L.1
Hyung, S.-J.2
Mayers, J.J.3
Ruotolo, B.T.4
-
63
-
-
84874521109
-
Traveling-wave ion mobility-mass spectrometry reveals additional mechanistic details in the stabilization of protein complex ions through tuned salt additives
-
Han L., Ruotolo B.T. Traveling-wave ion mobility-mass spectrometry reveals additional mechanistic details in the stabilization of protein complex ions through tuned salt additives. Int J Ion Mobil Spectrom 2013, 1-10.
-
(2013)
Int J Ion Mobil Spectrom
, pp. 1-10
-
-
Han, L.1
Ruotolo, B.T.2
-
64
-
-
0030810477
-
Collision-induced dissociation threshold energies of protonated glycine, glycinamide, and some related small peptides and peptide amino amides
-
Klassen J.S., Kebarle P. Collision-induced dissociation threshold energies of protonated glycine, glycinamide, and some related small peptides and peptide amino amides. J Am Chem Soc 1997, 119:6552-6563.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 6552-6563
-
-
Klassen, J.S.1
Kebarle, P.2
-
65
-
-
0035894045
-
Monitoring structural changes of proteins in an ion trap over ~10-200ms: unfolding transitions in cytochrome c ions
-
Badman E.R., Hoaglund-Hyzer C.S., Clemmer D.E. Monitoring structural changes of proteins in an ion trap over ~10-200ms: unfolding transitions in cytochrome c ions. Anal Chem 2001, 73:6000-6007.
-
(2001)
Anal Chem
, vol.73
, pp. 6000-6007
-
-
Badman, E.R.1
Hoaglund-Hyzer, C.S.2
Clemmer, D.E.3
-
66
-
-
84860170318
-
Protein subunits released by surface collisions of noncovalent complexes: nativelike compact structures revealed by ion mobility mass spectrometry
-
Zhou M., Dagan S., Wysocki V.H. Protein subunits released by surface collisions of noncovalent complexes: nativelike compact structures revealed by ion mobility mass spectrometry. Angew Chem Int Ed 2012, 51:4336-4339.
-
(2012)
Angew Chem Int Ed
, vol.51
, pp. 4336-4339
-
-
Zhou, M.1
Dagan, S.2
Wysocki, V.H.3
-
67
-
-
84873664528
-
Impact of charge state on gas-phase behaviors of noncovalent protein complexes in collision induced dissociation and surface induced dissociation
-
Zhou M., Dagan S., Wysocki V.H. Impact of charge state on gas-phase behaviors of noncovalent protein complexes in collision induced dissociation and surface induced dissociation. Analyst 2013, 138:1353-1362.
-
(2013)
Analyst
, vol.138
, pp. 1353-1362
-
-
Zhou, M.1
Dagan, S.2
Wysocki, V.H.3
-
68
-
-
33748572634
-
Aspects of native proteins are retained in vacuum
-
Ruotolo B.T., Robinson C.V. Aspects of native proteins are retained in vacuum. Curr Opin Chem Biol 2006, 10:402-408.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 402-408
-
-
Ruotolo, B.T.1
Robinson, C.V.2
-
69
-
-
79251613176
-
Interrogating viral capsid assembly with ion mobility-mass spectrometry
-
Uetrecht C., Barbu I.M., Shoemaker G.K., van Duijn E., Heck A.J. Interrogating viral capsid assembly with ion mobility-mass spectrometry. Nat Chem 2010, 3:126-132.
-
(2010)
Nat Chem
, vol.3
, pp. 126-132
-
-
Uetrecht, C.1
Barbu, I.M.2
Shoemaker, G.K.3
van Duijn, E.4
Heck, A.J.5
-
70
-
-
77951582169
-
Ion mobility mass spectrometry of proteins and protein assemblies
-
Uetrecht C., Rose R.J., van Duijn E., Lorenzen K., Heck A.J. Ion mobility mass spectrometry of proteins and protein assemblies. Chem Soc Rev 2010, 39:1633-1655.
-
(2010)
Chem Soc Rev
, vol.39
, pp. 1633-1655
-
-
Uetrecht, C.1
Rose, R.J.2
van Duijn, E.3
Lorenzen, K.4
Heck, A.J.5
-
71
-
-
0030621966
-
Studying noncovalent protein complexes by electrospray ionization mass spectrometry
-
Loo J.A. Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom Rev 1997, 16:1-23.
-
(1997)
Mass Spectrom Rev
, vol.16
, pp. 1-23
-
-
Loo, J.A.1
-
72
-
-
80053577815
-
Mass spectrometry: come of age for structural and dynamical biology
-
Benesch J.L., Ruotolo B.T. Mass spectrometry: come of age for structural and dynamical biology. Curr Opin Struct Biol 2011, 21:641-649.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 641-649
-
-
Benesch, J.L.1
Ruotolo, B.T.2
-
73
-
-
1442324456
-
Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides
-
Tabb D.L., Huang Y., Wysocki V.H., Yates J.R. Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides. Anal Chem 2004, 76:1243-1248.
-
(2004)
Anal Chem
, vol.76
, pp. 1243-1248
-
-
Tabb, D.L.1
Huang, Y.2
Wysocki, V.H.3
Yates, J.R.4
-
74
-
-
70349741035
-
An ion mobility-mass spectrometry investigation of monocyte chemoattractant protein-1
-
Schenauer M.R., Leary J.A. An ion mobility-mass spectrometry investigation of monocyte chemoattractant protein-1. Int J Mass Spectrom 2009, 287:70-76.
-
(2009)
Int J Mass Spectrom
, vol.287
, pp. 70-76
-
-
Schenauer, M.R.1
Leary, J.A.2
-
76
-
-
0001697163
-
Protein-carbohydrate interaction: 2. Inhibiton studies on interaction of concanavalin A with polysaccharides
-
Goldstei I.j., Hollerma C.e., Smith E.E. Protein-carbohydrate interaction: 2. Inhibiton studies on interaction of concanavalin A with polysaccharides. Biochemistry 1965, 4:876-882.
-
(1965)
Biochemistry
, vol.4
, pp. 876-882
-
-
Goldstei, I.1
Hollerma, C.2
Smith, E.E.3
-
77
-
-
75649146242
-
The effect of calcium ions and peptide ligands on the relative stabilities of the calmodulin dumbbell and compact structures
-
Wyttenbach T., Grabenauer M., Thalassinos K., Scrivens J.H., Bowers M.T. The effect of calcium ions and peptide ligands on the relative stabilities of the calmodulin dumbbell and compact structures. J Phys Chem B 2009, 114:437-447.
-
(2009)
J Phys Chem B
, vol.114
, pp. 437-447
-
-
Wyttenbach, T.1
Grabenauer, M.2
Thalassinos, K.3
Scrivens, J.H.4
Bowers, M.T.5
-
78
-
-
0029160568
-
Calcium-induced conformational transioin revealed by the structure of apo calmodulin
-
Zhang M., Tanaka T., Ikura M. Calcium-induced conformational transioin revealed by the structure of apo calmodulin. Nat Struct Biol 1995, 2:758-767.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 758-767
-
-
Zhang, M.1
Tanaka, T.2
Ikura, M.3
-
79
-
-
77951829683
-
Combination of noncovalent mass spectrometry and traveling wave ion mobility spectrometry reveals sugar-induced conformational changes of central glycolytic genes repressor/DNA complex
-
Atmanene C.d., Chaix D., Bessin Y., Declerck N., Van Dorsselaer A., Sanglier-Cianferani S. Combination of noncovalent mass spectrometry and traveling wave ion mobility spectrometry reveals sugar-induced conformational changes of central glycolytic genes repressor/DNA complex. Anal Chem 2010, 82:3597-3605.
-
(2010)
Anal Chem
, vol.82
, pp. 3597-3605
-
-
Atmanene, C.1
Chaix, D.2
Bessin, Y.3
Declerck, N.4
Van Dorsselaer, A.5
Sanglier-Cianferani, S.6
-
80
-
-
47749151093
-
Crystal structures of the effector-binding domain of repressor central glycolytic gene regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates
-
Rezacova P., Kozisek M., Moy S.F., Sieglova I., Joachimiak A., Machlus M., Otwinowski Z. Crystal structures of the effector-binding domain of repressor central glycolytic gene regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates. Mol Microbiol 2008, 69:895-910.
-
(2008)
Mol Microbiol
, vol.69
, pp. 895-910
-
-
Rezacova, P.1
Kozisek, M.2
Moy, S.F.3
Sieglova, I.4
Joachimiak, A.5
Machlus, M.6
Otwinowski, Z.7
-
81
-
-
79959728779
-
Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain
-
Brocca S., Testa L., Sobott F., Šamalikova M., Natalello A., Papaleo E., Lotti M., De Gioia L., Doglia S.M., Alberghina L. Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain. Biophys J 2011, 100:2243-2252.
-
(2011)
Biophys J
, vol.100
, pp. 2243-2252
-
-
Brocca, S.1
Testa, L.2
Sobott, F.3
Šamalikova, M.4
Natalello, A.5
Papaleo, E.6
Lotti, M.7
De Gioia, L.8
Doglia, S.M.9
Alberghina, L.10
-
82
-
-
67849106670
-
Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease
-
Bernstein S.L., Dupuis N.F., Lazo N.D., Wyttenbach T., Condron M.M., Bitan G., Teplow D.B., Shea J.E., Ruotolo B.T., Robinson C.V., et al. Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease. Nat Chem 2009, 1:326-331.
-
(2009)
Nat Chem
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
Bitan, G.6
Teplow, D.B.7
Shea, J.E.8
Ruotolo, B.T.9
Robinson, C.V.10
-
83
-
-
84870336361
-
Small-Molecule Inhibition of c-MYC: MAX leucine zipper formation is revealed by ion mobility mass spectrometry
-
Harvey S.R., Porrini M., Stachl C., MacMillan D., Zinzalla G., Barran P.E. Small-Molecule Inhibition of c-MYC: MAX leucine zipper formation is revealed by ion mobility mass spectrometry. J Am Chem Soc 2012, 134:19384-19392.
-
(2012)
J Am Chem Soc
, vol.134
, pp. 19384-19392
-
-
Harvey, S.R.1
Porrini, M.2
Stachl, C.3
MacMillan, D.4
Zinzalla, G.5
Barran, P.E.6
-
84
-
-
79957692254
-
Folding of a salivary intrinsically disordered protein upon binding to tannins
-
Canon F., Ballivian R., Chirot F., Antoine R., Sarni-Manchado P., Lemoine Jrm, Dugourd P. Folding of a salivary intrinsically disordered protein upon binding to tannins. J Am Chem Soc 2011, 133:7847-7852.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 7847-7852
-
-
Canon, F.1
Ballivian, R.2
Chirot, F.3
Antoine, R.4
Sarni-Manchado, P.5
Lemoine Jrm6
Dugourd, P.7
-
85
-
-
79251631002
-
Ion mobility-mass spectrometry reveals a conformational conversion from random assembly to β-sheet in amyloid fibril formation
-
Bleiholder C., Dupuis N.F., Wyttenbach T., Bowers M.T. Ion mobility-mass spectrometry reveals a conformational conversion from random assembly to β-sheet in amyloid fibril formation. Nat Chem 2010, 3:172-177.
-
(2010)
Nat Chem
, vol.3
, pp. 172-177
-
-
Bleiholder, C.1
Dupuis, N.F.2
Wyttenbach, T.3
Bowers, M.T.4
-
86
-
-
84863011516
-
A beta(39-42) modulates A beta oligomerization but not fibril formation
-
Gessel M.M., Wu C., Li H.Y., Bitan G., Shea J.E., Bowers M.T. A beta(39-42) modulates A beta oligomerization but not fibril formation. Biochemistry 2012, 51:108-117.
-
(2012)
Biochemistry
, vol.51
, pp. 108-117
-
-
Gessel, M.M.1
Wu, C.2
Li, H.Y.3
Bitan, G.4
Shea, J.E.5
Bowers, M.T.6
-
87
-
-
61649098771
-
The structure of Aβ42 C-terminal fragments probed by a combined experimental and theoretical study
-
Wu C., Murray M.M., Bernstein S.L., Condron M.M., Bitan G., Shea J.-E., Bowers M.T. The structure of Aβ42 C-terminal fragments probed by a combined experimental and theoretical study. J Mol Biol 2009, 387:492-501.
-
(2009)
J Mol Biol
, vol.387
, pp. 492-501
-
-
Wu, C.1
Murray, M.M.2
Bernstein, S.L.3
Condron, M.M.4
Bitan, G.5
Shea, J.-E.6
Bowers, M.T.7
-
88
-
-
44849087785
-
EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers
-
Ehrnhoefer D.E., Bieschke J., Boeddrich A., Herbst M., Masino L., Lurz R., Engemann S., Pastore A., Wanker E.E. EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers. Nat Struct Mol Biol 2008, 15:558-566.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 558-566
-
-
Ehrnhoefer, D.E.1
Bieschke, J.2
Boeddrich, A.3
Herbst, M.4
Masino, L.5
Lurz, R.6
Engemann, S.7
Pastore, A.8
Wanker, E.E.9
-
89
-
-
37549040575
-
The challenge of drugging undruggable targets in cancer: Lessons learned from targeting BCL-2 family members
-
Verdine G.L., Walensky L.D. The challenge of drugging undruggable targets in cancer: Lessons learned from targeting BCL-2 family members. Clin Cancer Res 2007, 13:7264-7270.
-
(2007)
Clin Cancer Res
, vol.13
, pp. 7264-7270
-
-
Verdine, G.L.1
Walensky, L.D.2
-
90
-
-
78649254350
-
Accessing new chemical space for 'undruggable' targets
-
Dandapani S., Marcaurelle L.A. Accessing new chemical space for 'undruggable' targets. Nat Chem Biol 2010, 6:861-863.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 861-863
-
-
Dandapani, S.1
Marcaurelle, L.A.2
-
91
-
-
33745298429
-
Rational design of inhibitors that bind to inactive kinase conformations
-
Liu Y., Gray N.S. Rational design of inhibitors that bind to inactive kinase conformations. Nat Chem Biol 2006, 2:358-364.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 358-364
-
-
Liu, Y.1
Gray, N.S.2
-
92
-
-
49649108911
-
Solution conformations and dynamics of ABL kinase-inhibitor complexes determined by NMR substantiate the different binding modes of imatinib/nilotinib and dasatinib
-
Vajpai N., Strauss A., Fendrich G., Cowan-Jacob S.W., Manley P.W., Grzesiek S., Jahnke W. Solution conformations and dynamics of ABL kinase-inhibitor complexes determined by NMR substantiate the different binding modes of imatinib/nilotinib and dasatinib. J Biol Chem 2008, 283:18292-18302.
-
(2008)
J Biol Chem
, vol.283
, pp. 18292-18302
-
-
Vajpai, N.1
Strauss, A.2
Fendrich, G.3
Cowan-Jacob, S.W.4
Manley, P.W.5
Grzesiek, S.6
Jahnke, W.7
-
93
-
-
65249119682
-
Comparative analysis of mutant tyrosine kinase chemical rescue
-
Muratore K.E., Seeliger M.A., Wang Z.H., Fomina D., Neiswinger J., Havranek J.J., Baker D., Kuriyan J., Cole P.A. Comparative analysis of mutant tyrosine kinase chemical rescue. Biochemistry 2009, 48:3378-3386.
-
(2009)
Biochemistry
, vol.48
, pp. 3378-3386
-
-
Muratore, K.E.1
Seeliger, M.A.2
Wang, Z.H.3
Fomina, D.4
Neiswinger, J.5
Havranek, J.J.6
Baker, D.7
Kuriyan, J.8
Cole, P.A.9
|