-
1
-
-
77957329119
-
Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli
-
Ajikumar P.K., Xiao W.H., Tyo K.E., Wang Y., Simeon F., Leonard E., Mucha O., Phon T.H., Pfeifer B., Stephanopoulos G. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74.
-
(2010)
Science
, vol.330
, pp. 70-74
-
-
Ajikumar, P.K.1
Xiao, W.H.2
Tyo, K.E.3
Wang, Y.4
Simeon, F.5
Leonard, E.6
Mucha, O.7
Phon, T.H.8
Pfeifer, B.9
Stephanopoulos, G.10
-
2
-
-
78650647970
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
-
Atsumi S., Wu T.Y., Machado I.M., Huang W.C., Chen P.Y., Pellegrini M., Liao J.C. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Mol. Syst. Biol. 2010, 6:449.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 449
-
-
Atsumi, S.1
Wu, T.Y.2
Machado, I.M.3
Huang, W.C.4
Chen, P.Y.5
Pellegrini, M.6
Liao, J.C.7
-
3
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T., Ara T., Hasegawa M., Takai Y., Okumura Y., Baba M., Datsenko K.A., Tomita M., Wanner B.L., Mori H. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2006, 2(2006):0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
, Issue.2006
, pp. 0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
4
-
-
84863936069
-
The Sweet Smell Of Microbes
-
Bomgardner M.M. The Sweet Smell Of Microbes. Chem. Eng. News 2012, 90:25-29.
-
(2012)
Chem. Eng. News
, vol.90
, pp. 25-29
-
-
Bomgardner, M.M.1
-
5
-
-
79955804234
-
Sustainable production of industrial chemicals from sugars
-
Burk M.J. Sustainable production of industrial chemicals from sugars. Int. Sugar J. 2010, 112:30-35.
-
(2010)
Int. Sugar J.
, vol.112
, pp. 30-35
-
-
Burk, M.J.1
-
6
-
-
33751120932
-
Production of isoprenoid pharmaceuticals by engineered microbes
-
Chang M.C., Keasling J.D. Production of isoprenoid pharmaceuticals by engineered microbes. Nat. Chem. Biol. 2006, 2:674-681.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 674-681
-
-
Chang, M.C.1
Keasling, J.D.2
-
7
-
-
84868628420
-
Synthetic pathway for production of five-carbon alcohols from isopentenyl diphosphate
-
Chou H.H., Keasling J.D. Synthetic pathway for production of five-carbon alcohols from isopentenyl diphosphate. Appl. Environ. Microbiol. 2012, 78:7849-7855.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 7849-7855
-
-
Chou, H.H.1
Keasling, J.D.2
-
8
-
-
36249014291
-
An update on microbial carotenoid production: application of recent metabolic engineering tools
-
Das A., Yoon S.H., Lee S.H., Kim J.Y., Oh D.K., Kim S.W. An update on microbial carotenoid production: application of recent metabolic engineering tools. Appl. Microbiol. Biotechnol. 2007, 77:505-512.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.77
, pp. 505-512
-
-
Das, A.1
Yoon, S.H.2
Lee, S.H.3
Kim, J.Y.4
Oh, D.K.5
Kim, S.W.6
-
9
-
-
85015394661
-
Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis
-
Dietrich J.A., Shis D.L., Alikhani A., Keasling J.D. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth. Biol 2012.
-
(2012)
ACS Synth. Biol
-
-
Dietrich, J.A.1
Shis, D.L.2
Alikhani, A.3
Keasling, J.D.4
-
10
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
Dunlop M.J., Dossani Z.Y., Szmidt H.L., Chu H.C., Lee T.S., Keasling J.D., Hadi M.Z., Mukhopadhyay A. Engineering microbial biofuel tolerance and export using efflux pumps. Mol. Syst. Biol. 2011, 7:487.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.Z.7
Mukhopadhyay, A.8
-
11
-
-
77955852574
-
A model for improving microbial biofuel production using a synthetic feedback loop
-
Dunlop M.J., Keasling J.D., Mukhopadhyay A. A model for improving microbial biofuel production using a synthetic feedback loop. Syst. Synth. Biol. 2010, 4:95-104.
-
(2010)
Syst. Synth. Biol.
, vol.4
, pp. 95-104
-
-
Dunlop, M.J.1
Keasling, J.D.2
Mukhopadhyay, A.3
-
12
-
-
55349129970
-
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs
-
Fozo E.M., Kawano M., Fontaine F., Kaya Y., Mendieta K.S., Jones K.L., Ocampo A., Rudd K.E., Storz G. Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Mol. Microbiol. 2008, 70:1076-1093.
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 1076-1093
-
-
Fozo, E.M.1
Kawano, M.2
Fontaine, F.3
Kaya, Y.4
Mendieta, K.S.5
Jones, K.L.6
Ocampo, A.7
Rudd, K.E.8
Storz, G.9
-
13
-
-
84873544862
-
Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli
-
Fried L., Behr S., Jung K. Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli. J. Bacteriol. 2013, 195:807-815.
-
(2013)
J. Bacteriol.
, vol.195
, pp. 807-815
-
-
Fried, L.1
Behr, S.2
Jung, K.3
-
14
-
-
33750500341
-
Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12
-
Hayes E.T., Wilks J.C., Sanfilippo P., Yohannes E., Tate D.P., Jones B.D., Radmacher M.D., BonDurant S.S., Slonczewski J.L. Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. BMC Microbiol. 2006, 6:89.
-
(2006)
BMC Microbiol.
, vol.6
, pp. 89
-
-
Hayes, E.T.1
Wilks, J.C.2
Sanfilippo, P.3
Yohannes, E.4
Tate, D.P.5
Jones, B.D.6
Radmacher, M.D.7
BonDurant, S.S.8
Slonczewski, J.L.9
-
15
-
-
0028519066
-
Mechanisms of resistance of whole cells to toxic organic-solvents
-
Heipieper H.J., Weber F.J., Sikkema J., Keweloh H., Debont J.A.M. Mechanisms of resistance of whole cells to toxic organic-solvents. Trends Biotechnol. 1994, 12:409-415.
-
(1994)
Trends Biotechnol.
, vol.12
, pp. 409-415
-
-
Heipieper, H.J.1
Weber, F.J.2
Sikkema, J.3
Keweloh, H.4
Debont, J.A.M.5
-
16
-
-
77952491139
-
Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology
-
Jarboe L.R., Zhang X., Wang X., Moore J.C., Shanmugam K.T., Ingram L.O. Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology. J. Biomed. Biotechnol. 2010, 761042.
-
(2010)
J. Biomed. Biotechnol.
, pp. 761042
-
-
Jarboe, L.R.1
Zhang, X.2
Wang, X.3
Moore, J.C.4
Shanmugam, K.T.5
Ingram, L.O.6
-
17
-
-
84855694523
-
Modular engineering of l-tyrosine production in Escherichia coli
-
Juminaga D., Baidoo E.E., Redding-Johanson A.M., Batth T.S., Burd H., Mukhopadhyay A., Petzold C.J., Keasling J.D. Modular engineering of l-tyrosine production in Escherichia coli. Appl. Environ. Microbiol. 2012, 78:89-98.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 89-98
-
-
Juminaga, D.1
Baidoo, E.E.2
Redding-Johanson, A.M.3
Batth, T.S.4
Burd, H.5
Mukhopadhyay, A.6
Petzold, C.J.7
Keasling, J.D.8
-
18
-
-
43249083977
-
Rapid acid treatment of Escherichia coli: transcriptomic response and recovery
-
Kannan G., Wilks J.C., Fitzgerald D.M., Jones B.D., Bondurant S.S., Slonczewski J.L. Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. BMC Microbiol. 2008, 8:37.
-
(2008)
BMC Microbiol.
, vol.8
, pp. 37
-
-
Kannan, G.1
Wilks, J.C.2
Fitzgerald, D.M.3
Jones, B.D.4
Bondurant, S.S.5
Slonczewski, J.L.6
-
19
-
-
84859772410
-
Synthetic biology and the development of tools for metabolic engineering
-
Keasling J.D. Synthetic biology and the development of tools for metabolic engineering. Metab. Eng. 2012, 14:189-195.
-
(2012)
Metab. Eng.
, vol.14
, pp. 189-195
-
-
Keasling, J.D.1
-
20
-
-
78651281217
-
EcoCyc: a comprehensive database of Escherichia coli biology
-
Keseler I.M., Collado-Vides J., Santos-Zavaleta A., Peralta-Gil M., Gama-Castro S., Muniz-Rascado L., Bonavides-Martinez C., Paley S., Krummenacker M., Altman T., Kaipa P., Spaulding A., Pacheco J., Latendresse M., Fulcher C., Sarker M., Shearer A.G., Mackie A., Paulsen I., Gunsalus R.P., Karp P.D. EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Res. 2011, 39:D583-590.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Keseler, I.M.1
Collado-Vides, J.2
Santos-Zavaleta, A.3
Peralta-Gil, M.4
Gama-Castro, S.5
Muniz-Rascado, L.6
Bonavides-Martinez, C.7
Paley, S.8
Krummenacker, M.9
Altman, T.10
Kaipa, P.11
Spaulding, A.12
Pacheco, J.13
Latendresse, M.14
Fulcher, C.15
Sarker, M.16
Shearer, A.G.17
Mackie, A.18
Paulsen, I.19
Gunsalus, R.P.20
Karp, P.D.21
more..
-
21
-
-
77951278557
-
Site-specific chromosomal integration of large synthetic constructs
-
Kuhlman T.E., Cox E.C. Site-specific chromosomal integration of large synthetic constructs. Nucleic Acids Res. 2010, 38:e92.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kuhlman, T.E.1
Cox, E.C.2
-
22
-
-
80053175916
-
BglBrick vectors and datasheets: a synthetic biology platform for gene expression
-
Lee T.S., Krupa R.A., Zhang F., Hajimorad M., Holtz W.J., Prasad N., Lee S.K., Keasling J.D. BglBrick vectors and datasheets: a synthetic biology platform for gene expression. J. Biol. Eng. 2011, 5:12.
-
(2011)
J. Biol. Eng.
, vol.5
, pp. 12
-
-
Lee, T.S.1
Krupa, R.A.2
Zhang, F.3
Hajimorad, M.4
Holtz, W.J.5
Prasad, N.6
Lee, S.K.7
Keasling, J.D.8
-
23
-
-
80052027792
-
Styrene biosynthesis from glucose by engineered E. coli
-
McKenna R., Nielsen D.R. Styrene biosynthesis from glucose by engineered E. coli. Metab. Eng. 2011, 13:544-554.
-
(2011)
Metab. Eng.
, vol.13
, pp. 544-554
-
-
McKenna, R.1
Nielsen, D.R.2
-
24
-
-
77950863739
-
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
-
Moon T.S., Dueber J.E., Shiue E., Prather K.L. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab. Eng. 2010, 12:298-305.
-
(2010)
Metab. Eng.
, vol.12
, pp. 298-305
-
-
Moon, T.S.1
Dueber, J.E.2
Shiue, E.3
Prather, K.L.4
-
26
-
-
80053412686
-
Identification and microbial production of a terpene-based advanced biofuel
-
Peralta-Yahya P.P., Ouellet M., Chan R., Mukhopadhyay A., Keasling J.D., Lee T.S. Identification and microbial production of a terpene-based advanced biofuel. Nat. Commun. 2011, 2:483.
-
(2011)
Nat. Commun.
, vol.2
, pp. 483
-
-
Peralta-Yahya, P.P.1
Ouellet, M.2
Chan, R.3
Mukhopadhyay, A.4
Keasling, J.D.5
Lee, T.S.6
-
27
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Pfaffl, M.W.1
-
28
-
-
33845624857
-
Microbial sensors for small molecules: development of a mevalonate biosensor
-
Pfleger B.F., Pitera D.J., Newman J.D., Martin V.J., Keasling J.D. Microbial sensors for small molecules: development of a mevalonate biosensor. Metab. Eng. 2007, 9:30-38.
-
(2007)
Metab. Eng.
, vol.9
, pp. 30-38
-
-
Pfleger, B.F.1
Pitera, D.J.2
Newman, J.D.3
Martin, V.J.4
Keasling, J.D.5
-
29
-
-
84942048668
-
Octanol-Water partition-coefficients of simple organic-compounds
-
Sangster J. Octanol-Water partition-coefficients of simple organic-compounds. J. Phys. Chem. Ref. Data 1989, 18:1111-1229.
-
(1989)
J. Phys. Chem. Ref. Data
, vol.18
, pp. 1111-1229
-
-
Sangster, J.1
-
30
-
-
14644394932
-
Time-course data analysis of gene expression profiles reveals purR regulon concerns in organic solvent tolerance in Escherichia coli
-
Shimizu K., Hayashi S., Doukyu N., Kobayashi T., Honda H. Time-course data analysis of gene expression profiles reveals purR regulon concerns in organic solvent tolerance in Escherichia coli. J. Biosci. Bioeng. 2005, 99:72-74.
-
(2005)
J. Biosci. Bioeng.
, vol.99
, pp. 72-74
-
-
Shimizu, K.1
Hayashi, S.2
Doukyu, N.3
Kobayashi, T.4
Honda, H.5
-
31
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
Steen E.J., Kang Y., Bokinsky G., Hu Z., Schirmer A., McClure A., Del Cardayre S.B., Keasling J.D. Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 2010, 463:559-562.
-
(2010)
Nature
, vol.463
, pp. 559-562
-
-
Steen, E.J.1
Kang, Y.2
Bokinsky, G.3
Hu, Z.4
Schirmer, A.5
McClure, A.6
Del Cardayre, S.B.7
Keasling, J.D.8
-
32
-
-
77950858848
-
Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli
-
Tsao C.Y., Hooshangi S., Wu H.C., Valdes J.J., Bentley W.E. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metab. Eng. 2010, 12:291-297.
-
(2010)
Metab. Eng.
, vol.12
, pp. 291-297
-
-
Tsao, C.Y.1
Hooshangi, S.2
Wu, H.C.3
Valdes, J.J.4
Bentley, W.E.5
-
33
-
-
34848823739
-
Consequences of membrane protein overexpression in Escherichia coli
-
Wagner S., Baars L., Ytterberg A.J., Klussmeier A., Wagner C.S., Nord O., Nygren P.A., van Wijk K.J., de Gier J.W. Consequences of membrane protein overexpression in Escherichia coli. Mol. Cell. Proteomics 2007, 6:1527-1550.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1527-1550
-
-
Wagner, S.1
Baars, L.2
Ytterberg, A.J.3
Klussmeier, A.4
Wagner, C.S.5
Nord, O.6
Nygren, P.A.7
van Wijk, K.J.8
de Gier, J.W.9
-
34
-
-
79959374585
-
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
-
Yim H., Haselbeck R., Niu W., Pujol-Baxley C., Burgard A., Boldt J., Khandurina J., Trawick J.D., Osterhout R.E., Stephen R., Estadilla J., Teisan S., Schreyer H.B., Andrae S., Yang T.H., Lee S.Y., Burk M.J., Van Dien S. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat. Chem. Biol. 2011, 7:445-452.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 445-452
-
-
Yim, H.1
Haselbeck, R.2
Niu, W.3
Pujol-Baxley, C.4
Burgard, A.5
Boldt, J.6
Khandurina, J.7
Trawick, J.D.8
Osterhout, R.E.9
Stephen, R.10
Estadilla, J.11
Teisan, S.12
Schreyer, H.B.13
Andrae, S.14
Yang, T.H.15
Lee, S.Y.16
Burk, M.J.17
Van Dien, S.18
-
35
-
-
33746415885
-
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
-
Zaslaver A., Bren A., Ronen M., Itzkovitz S., Kikoin I., Shavit S., Liebermeister W., Surette M.G., Alon U. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 2006, 3:623-628.
-
(2006)
Nat. Methods
, vol.3
, pp. 623-628
-
-
Zaslaver, A.1
Bren, A.2
Ronen, M.3
Itzkovitz, S.4
Kikoin, I.5
Shavit, S.6
Liebermeister, W.7
Surette, M.G.8
Alon, U.9
-
36
-
-
84859633048
-
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
-
Zhang F., Carothers J.M., Keasling J.D. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat. Biotechnol. 2012, 30:354-359.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 354-359
-
-
Zhang, F.1
Carothers, J.M.2
Keasling, J.D.3
-
37
-
-
84869039746
-
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
-
Zhang F., Ouellet M., Batth T.S., Adams P.D., Petzold C.J., Mukhopadhyay A., Keasling J.D. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metab. Eng. 2012, 14:653-660.
-
(2012)
Metab. Eng.
, vol.14
, pp. 653-660
-
-
Zhang, F.1
Ouellet, M.2
Batth, T.S.3
Adams, P.D.4
Petzold, C.J.5
Mukhopadhyay, A.6
Keasling, J.D.7
|