메뉴 건너뛰기




Volumn 195, Issue 4, 2013, Pages 807-815

Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROTEIN HISTIDINE KINASE; UNCLASSIFIED DRUG; YHJX PROTEIN; YPDA HISTIDINE KINASE; YPDB HISTIDINE KINASE;

EID: 84873544862     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.02051-12     Document Type: Article
Times cited : (38)

References (50)
  • 2
    • 84886972478 scopus 로고    scopus 로고
    • Stimulus perception and signaling in histidine kinases
    • Krämer R, Jung K (ed), Wiley-VCH, Weinheim, Germany
    • Heermann R, Jung K. 2010. Stimulus perception and signaling in histidine kinases, p 135-161. In Krämer R, Jung K (ed), Bacterial signaling. Wiley-VCH, Weinheim, Germany.
    • (2010) Bacterial signaling , pp. 135-161
    • Heermann, R.1    Jung, K.2
  • 4
    • 12544258487 scopus 로고    scopus 로고
    • Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli
    • Yamamoto K, Hirao K, Oshima T, Aiba H, Utsumi R, Ishihama A. 2005. Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 280:1448-1456.
    • (2005) J. Biol. Chem. , vol.280 , pp. 1448-1456
    • Yamamoto, K.1    Hirao, K.2    Oshima, T.3    Aiba, H.4    Utsumi, R.5    Ishihama, A.6
  • 5
    • 0043032929 scopus 로고    scopus 로고
    • Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all twocomponent systems
    • Zhou L, Lei X-H, Bochner BR, Wanner BL. 2003. Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all twocomponent systems. J. Bacteriol. 185:4956-4972.
    • (2003) J. Bacteriol. , vol.185 , pp. 4956-4972
    • Zhou, L.1    Lei, X.-H.2    Bochner, B.R.3    Wanner, B.L.4
  • 7
    • 9144253359 scopus 로고    scopus 로고
    • Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria
    • doi:10.1186/1471-2164-4-34
    • Anantharaman V, Aravind L. 2003. Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria. BMC Genomics 4:34. doi:10.1186/1471-2164-4-34.
    • (2003) BMC Genomics , vol.4 , pp. 34
    • Anantharaman, V.1    Aravind, L.2
  • 8
    • 42949103706 scopus 로고    scopus 로고
    • Telling bacteria: do not LytTR
    • Galperin MY. 2008. Telling bacteria: do not LytTR. Structure 16:657-659.
    • (2008) Structure , vol.16 , pp. 657-659
    • Galperin, M.Y.1
  • 9
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer E. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Evol. 305:567-580.
    • (2001) J. Mol. Evol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.4
  • 10
    • 34047151404 scopus 로고    scopus 로고
    • Improving the accuracy of transmembrane protein topology prediction using evolutionary information
    • Jones DT. 2007. Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics 23: 538-544.
    • (2007) Bioinformatics , vol.23 , pp. 538-544
    • Jones, D.T.1
  • 11
    • 48249151108 scopus 로고    scopus 로고
    • OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
    • Viklund H, Elofsson A. 2008. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar. Bioinformatics 24:1662-1668.
    • (2008) Bioinformatics , vol.24 , pp. 1662-1668
    • Viklund, H.1    Elofsson, A.2
  • 12
    • 0036606155 scopus 로고    scopus 로고
    • A novel type of conserved DNAbinding domain in the transcriptional regulators of the AlgR/AgrA/LytR family
    • Nikolskaya AN, Galperin MY. 2002. A novel type of conserved DNAbinding domain in the transcriptional regulators of the AlgR/AgrA/LytR family. Nucleic Acids Res. 30:2453-2459.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2453-2459
    • Nikolskaya, A.N.1    Galperin, M.Y.2
  • 13
    • 42949179170 scopus 로고    scopus 로고
    • Structure of the Staphylococcus aureus AgrA LytTR domain bound to DNA reveals a beta fold with an unusual mode of binding
    • Sidote DJ, Barbieri CM, Wu T, Stock AM. 2008. Structure of the Staphylococcus aureus AgrA LytTR domain bound to DNA reveals a beta fold with an unusual mode of binding. Structure 16:727-735.
    • (2008) Structure , vol.16 , pp. 727-735
    • Sidote, D.J.1    Barbieri, C.M.2    Wu, T.3    Stock, A.M.4
  • 14
    • 79952780125 scopus 로고    scopus 로고
    • Enterococcus faecalis virulence regulator FsrA binding to target promoters
    • Del Papa MF, Perego M. 2011. Enterococcus faecalis virulence regulator FsrA binding to target promoters. J. Bacteriol. 193:1527.
    • (2011) J. Bacteriol. , vol.193 , pp. 1527
    • Del Papa, M.F.1    Perego, M.2
  • 15
    • 84866342658 scopus 로고    scopus 로고
    • First insights into the unexplored two-component system YehU/YehT in Escherichia coli
    • Kraxenberger T, Fried L, Behr S, Jung K. 2012. First insights into the unexplored two-component system YehU/YehT in Escherichia coli. J. Bacteriol. 194:4272-4284.
    • (2012) J. Bacteriol. , vol.194 , pp. 4272-4284
    • Kraxenberger, T.1    Fried, L.2    Behr, S.3    Jung, K.4
  • 17
    • 43149090031 scopus 로고    scopus 로고
    • Simple generation of sitedirected point mutations in the Escherichia coli chromosome using Red/ET recombination
    • doi:10.1186/1475-2859-7-14
    • Heermann R, Zeppenfeld T, Jung K. 2008. Simple generation of sitedirected point mutations in the Escherichia coli chromosome using Red/ET recombination. Microb. Cell Fact. 7:14. doi:10.1186/1475-2859-7-14.
    • (2008) Microb. Cell Fact. , vol.7 , pp. 14
    • Heermann, R.1    Zeppenfeld, T.2    Jung, K.3
  • 18
    • 0023042283 scopus 로고
    • Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
    • Studier FW, Moffatt BA. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189: 113-130.
    • (1986) J. Mol. Biol. , vol.189 , pp. 113-130
    • Studier, F.W.1    Moffatt, B.A.2
  • 19
    • 0014427164 scopus 로고
    • DNA restriction enzyme from E. coli
    • Meselson M, Yuan R. 1968. DNA restriction enzyme from E. coli. Nature 217:1110-1114.
    • (1968) Nature , vol.217 , pp. 1110-1114
    • Meselson, M.1    Yuan, R.2
  • 20
    • 0019888537 scopus 로고
    • Evidence for two functional gal promoters in intact Escherichia coli cells
    • Aiba H, Adhya S, de Crombrugghe B. 1981. Evidence for two functional gal promoters in intact Escherichia coli cells. J. Biol. Chem. 256:11905-11910.
    • (1981) J. Biol. Chem. , vol.256 , pp. 11905-11910
    • Aiba, H.1    Adhya, S.2    de Crombrugghe, B.3
  • 22
    • 0003903343 scopus 로고
    • Molecular cloning: a laboratory manual
    • 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1989)
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 24
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 25
    • 77957008400 scopus 로고
    • Preparation and assay of acetyl phosphate
    • Stadtman ER. 1957. Preparation and assay of acetyl phosphate. Methods Enzymol. 3:228-231.
    • (1957) Methods Enzymol. , vol.3 , pp. 228-231
    • Stadtman, E.R.1
  • 26
    • 0002394619 scopus 로고
    • A specific micromethod for the determination of acyl phosphates
    • Lipmann F, Tuttle LC. 1945. A specific micromethod for the determination of acyl phosphates. J. Biol. Chem. 159:21-28.
    • (1945) J. Biol. Chem. , vol.159 , pp. 21-28
    • Lipmann, F.1    Tuttle, L.C.2
  • 28
    • 37749014565 scopus 로고    scopus 로고
    • The membraneintegrated transcriptional activator CadC of Escherichia coli senses lysine indirectly via the interaction with the lysine permease LysP
    • Tetsch L, Koller C, Haneburger I, Jung K. 2008. The membraneintegrated transcriptional activator CadC of Escherichia coli senses lysine indirectly via the interaction with the lysine permease LysP. Mol. Microbiol. 67:570-583.
    • (2008) Mol. Microbiol. , vol.67 , pp. 570-583
    • Tetsch, L.1    Koller, C.2    Haneburger, I.3    Jung, K.4
  • 30
    • 54549099189 scopus 로고    scopus 로고
    • A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments
    • Shah IM, Laaberki MH, Popham DL, Dworkin J. 2008. A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments. Cell 135:486-496.
    • (2008) Cell , vol.135 , pp. 486-496
    • Shah, I.M.1    Laaberki, M.H.2    Popham, D.L.3    Dworkin, J.4
  • 32
    • 33745924114 scopus 로고    scopus 로고
    • Modulation of the ComAdependent quorum response in Bacillus subtilis by multiple Rap proteins and Phr peptides
    • Auchtung JM, Lee CA, Grossman AD. 2006. Modulation of the ComAdependent quorum response in Bacillus subtilis by multiple Rap proteins and Phr peptides. J. Bacteriol. 188:5273-5285.
    • (2006) J. Bacteriol. , vol.188 , pp. 5273-5285
    • Auchtung, J.M.1    Lee, C.A.2    Grossman, A.D.3
  • 33
    • 79956103571 scopus 로고    scopus 로고
    • Identification of ArgP and Lrp as transcriptional regulators of lysP, the gene encoding the specific lysine permease of Escherichia coli
    • Ruiz J, Haneburger I, Jung K. 2011. Identification of ArgP and Lrp as transcriptional regulators of lysP, the gene encoding the specific lysine permease of Escherichia coli. J. Bacteriol. 193:2536-2548.
    • (2011) J. Bacteriol. , vol.193 , pp. 2536-2548
    • Ruiz, J.1    Haneburger, I.2    Jung, K.3
  • 36
    • 0033989674 scopus 로고    scopus 로고
    • The VirR response regulator from Clostridium perfringens binds independently to two imperfect direct repeats located upstream of the pfoA promoter
    • Cheung JK, Rood JI. 2000. The VirR response regulator from Clostridium perfringens binds independently to two imperfect direct repeats located upstream of the pfoA promoter. J. Bacteriol. 182:57-66.
    • (2000) J. Bacteriol. , vol.182 , pp. 57-66
    • Cheung, J.K.1    Rood, J.I.2
  • 37
    • 0029772572 scopus 로고    scopus 로고
    • Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11
    • Diep DB, Havarstein LS, Nes IF. 1996. Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11. J. Bacteriol. 178:4472-4483.
    • (1996) J. Bacteriol. , vol.178 , pp. 4472-4483
    • Diep, D.B.1    Havarstein, L.S.2    Nes, I.F.3
  • 41
    • 0030049824 scopus 로고    scopus 로고
    • Identification and molecular characterization of a putative regulatory locus that affects autolysis in Staphylococcus aureus
    • Brunskill E, Bayles K. 1996. Identification and molecular characterization of a putative regulatory locus that affects autolysis in Staphylococcus aureus. J. Bacteriol. 178:611-618.
    • (1996) J. Bacteriol. , vol.178 , pp. 611-618
    • Brunskill, E.1    Bayles, K.2
  • 43
    • 0030463296 scopus 로고    scopus 로고
    • Flux analysis and control of the central metabolic pathways in Escherichia coli
    • Holms H. 1996. Flux analysis and control of the central metabolic pathways in Escherichia coli. FEMS Microbiol. Rev. 19:85-116.
    • (1996) FEMS Microbiol. Rev. , vol.19 , pp. 85-116
    • Holms, H.1
  • 44
    • 84865972260 scopus 로고    scopus 로고
    • Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms
    • doi:10.1186/1475-2859-11-122
    • Paczia N, Nilgen A, Lehmann T, Gatgens J, Wiechert W, Noack S. 2012. Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms. Microb. Cell Fact. 11:122. doi:10.1186/1475-2859-11-122.
    • (2012) Microb. Cell Fact. , vol.11 , pp. 122
    • Paczia, N.1    Nilgen, A.2    Lehmann, T.3    Gatgens, J.4    Wiechert, W.5    Noack, S.6
  • 45
    • 13244279408 scopus 로고    scopus 로고
    • Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli
    • Murray EL, Conway T. 2005. Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli. J. Bacteriol. 187: 991-1000.
    • (2005) J. Bacteriol. , vol.187 , pp. 991-1000
    • Murray, E.L.1    Conway, T.2
  • 46
    • 33646578756 scopus 로고    scopus 로고
    • Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio
    • Vemuri GN, Altman E, Sangurdekar DP, Khodursky AB, Eiteman MA. 2006. Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio. Appl. Environ. Microbiol. 72:3653-3661.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3653-3661
    • Vemuri, G.N.1    Altman, E.2    Sangurdekar, D.P.3    Khodursky, A.B.4    Eiteman, M.A.5
  • 47
    • 27744450676 scopus 로고    scopus 로고
    • Escherichia coli starvation diets: essential nutrients weigh in distinctly
    • Peterson CN, Mandel MJ, Silhavy TJ. 2005. Escherichia coli starvation diets: essential nutrients weigh in distinctly. J. Bacteriol. 187:7549-7553.
    • (2005) J. Bacteriol. , vol.187 , pp. 7549-7553
    • Peterson, C.N.1    Mandel, M.J.2    Silhavy, T.J.3
  • 48
    • 0036714331 scopus 로고    scopus 로고
    • Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
    • Hengge-Aronis R. 2002. Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66:373-395.
    • (2002) Microbiol. Mol. Biol. Rev. , vol.66 , pp. 373-395
    • Hengge-Aronis, R.1
  • 49
    • 78149328780 scopus 로고    scopus 로고
    • Impact of the Staphylococcus epidermidis LytSR two-component regulatory system on murein hydrolase activity, pyruvate utilization and global transcriptional profile
    • doi:10.1186/1471-2180-10-287
    • Zhu T, Lou Q, Wu Y, Hu J, Yu F, Qu D. 2010. Impact of the Staphylococcus epidermidis LytSR two-component regulatory system on murein hydrolase activity, pyruvate utilization and global transcriptional profile. BMC Microbiol. 10:287. doi:10.1186/1471-2180-10-287.
    • (2010) BMC Microbiol. , vol.10 , pp. 287
    • Zhu, T.1    Wu, Y.2    Hu, J.3    Yu, F.4    Qu, D.5
  • 50
    • 33745875402 scopus 로고    scopus 로고
    • Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument
    • Zianni M, Tessanne K, Merighi M, Laguna R, Tabita FR. 2006. Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument. J. Biomol. Tech. 17:103-113.
    • (2006) J. Biomol. Tech. , vol.17 , pp. 103-113
    • Zianni, M.1    Tessanne, K.2    Merighi, M.3    Laguna, R.4    Tabita, F.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.