메뉴 건너뛰기




Volumn 117, Issue 39, 2013, Pages 11518-11529

Familial Alzheimer's disease Osaka mutant (ΔE22) β-barrels suggest an explanation for the different Aβ1-40/42 preferred conformational states observed by experiment

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; GLYCOPROTEINS; LIPID BILAYERS; MOLECULAR DYNAMICS; NEURODEGENERATIVE DISEASES; PEPTIDES;

EID: 84885138277     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp405389n     Document Type: Article
Times cited : (31)

References (51)
  • 2
    • 62549147038 scopus 로고    scopus 로고
    • The E693Δ mutation in amyloid precursor protein increases intracellular accumulation of amyloid β oligomers and causes endoplasmic reticulum stress-induced apoptosis in cultured cells
    • Nishitsuji, K.; Tomiyama, T.; Ishibashi, K.; Ito, K.; Teraoka, R.; Lambert, M. P.; Klein, W. L.; Mori, H. The E693Δ mutation in amyloid precursor protein increases intracellular accumulation of amyloid β oligomers and causes endoplasmic reticulum stress-induced apoptosis in cultured cells Am. J. Pathol. 2009, 174, 957-969
    • (2009) Am. J. Pathol. , vol.174 , pp. 957-969
    • Nishitsuji, K.1    Tomiyama, T.2    Ishibashi, K.3    Ito, K.4    Teraoka, R.5    Lambert, M.P.6    Klein, W.L.7    Mori, H.8
  • 3
    • 77950617631 scopus 로고    scopus 로고
    • A mouse model of amyloid β oligomers: Their contribution to synaptic alteration, abnormal tau phosphorylation, glial activation, and neuronal loss in vivo
    • Tomiyama, T.; Matsuyama, S.; Iso, H.; Umeda, T.; Takuma, H.; Ohnishi, K.; Ishibashi, K.; Teraoka, R.; Sakama, N.; Yamashita, T. A mouse model of amyloid β oligomers: their contribution to synaptic alteration, abnormal tau phosphorylation, glial activation, and neuronal loss in vivo J. Neurosci. 2010, 30, 4845-4856
    • (2010) J. Neurosci. , vol.30 , pp. 4845-4856
    • Tomiyama, T.1    Matsuyama, S.2    Iso, H.3    Umeda, T.4    Takuma, H.5    Ohnishi, K.6    Ishibashi, K.7    Teraoka, R.8    Sakama, N.9    Yamashita, T.10
  • 4
    • 80052205634 scopus 로고    scopus 로고
    • Structural dynamics of the Δe22 (Osaka) familial Alzheimer's disease-linked amyloid β-protein
    • Inayathullah, M.; Teplow, D. B. Structural dynamics of the ΔE22 (Osaka) familial Alzheimer's disease-linked amyloid β-protein Amyloid 2011, 18, 98-107
    • (2011) Amyloid , vol.18 , pp. 98-107
    • Inayathullah, M.1    Teplow, D.B.2
  • 5
    • 79952938717 scopus 로고    scopus 로고
    • The Japanese mutant Aβ (ΔE22-Aβ(1-39)) forms fibrils instantaneously, with low-thioflavin T fluorescence: Seeding of wild-type Aβ(1-40) into atypical fibrils by Δe22-Aβ(1-39)
    • Cloe, A. L.; Orgel, J. P.; Sachleben, J. R.; Tycko, R.; Meredith, S. C. The Japanese mutant Aβ (ΔE22-Aβ(1-39)) forms fibrils instantaneously, with low-thioflavin T fluorescence: seeding of wild-type Aβ(1-40) into atypical fibrils by ΔE22-Aβ(1-39) Biochemistry 2011, 50, 2026-2039
    • (2011) Biochemistry , vol.50 , pp. 2026-2039
    • Cloe, A.L.1    Orgel, J.P.2    Sachleben, J.R.3    Tycko, R.4    Meredith, S.C.5
  • 6
    • 79955038897 scopus 로고    scopus 로고
    • The Osaka FAD mutation E22Δ leads to the formation of a previously unknown type of amyloid β fibrils and modulates Aβ neurotoxicity
    • Ovchinnikova, O. Y.; Finder, V. H.; Vodopivec, I.; Nitsch, R. M.; Glockshuber, R. The Osaka FAD mutation E22Δ leads to the formation of a previously unknown type of amyloid β fibrils and modulates Aβ neurotoxicity J. Mol. Biol. 2011, 408, 780-791
    • (2011) J. Mol. Biol. , vol.408 , pp. 780-791
    • Ovchinnikova, O.Y.1    Finder, V.H.2    Vodopivec, I.3    Nitsch, R.M.4    Glockshuber, R.5
  • 11
    • 0034282630 scopus 로고    scopus 로고
    • Substitutions at codon 22 of Alzheimer's Aβ peptide induce diverse conformational changes and apoptotic effects in human cerebral endothelial cells
    • Miravalle, L.; Tokuda, T.; Chiarle, R.; Giaccone, G.; Bugiani, O.; Tagliavini, F.; Frangione, B.; Ghiso, J. Substitutions at codon 22 of Alzheimer's Aβ peptide induce diverse conformational changes and apoptotic effects in human cerebral endothelial cells J. Biol. Chem. 2000, 275, 27110-27116
    • (2000) J. Biol. Chem. , vol.275 , pp. 27110-27116
    • Miravalle, L.1    Tokuda, T.2    Chiarle, R.3    Giaccone, G.4    Bugiani, O.5    Tagliavini, F.6    Frangione, B.7    Ghiso, J.8
  • 12
    • 79251539305 scopus 로고    scopus 로고
    • Point Mutations in Aβ Result in the Formation of Distinct Polymorphic Aggregates in the Presence of Lipid Bilayers
    • Pifer, P. M.; Yates, E. A.; Legleiter, J. Point Mutations in Aβ Result in the Formation of Distinct Polymorphic Aggregates in the Presence of Lipid Bilayers PLoS One 2011, 6, e16248
    • (2011) PLoS One , vol.6 , pp. 16248
    • Pifer, P.M.1    Yates, E.A.2    Legleiter, J.3
  • 13
    • 0242580170 scopus 로고    scopus 로고
    • Neurotoxicity and physicochemical properties of Aβ mutant peptides from cerebral amyloid angiopathy - Implication for the pathogenesis of cerebral amyloid angiopathy and Alzheimer's disease
    • Murakami, K.; Irie, K.; Morimoto, A.; Ohigashi, H.; Shindo, M.; Nagao, M.; Shimizu, T.; Shirasawa, T. Neurotoxicity and physicochemical properties of Aβ mutant peptides from cerebral amyloid angiopathy-Implication for the pathogenesis of cerebral amyloid angiopathy and Alzheimer's disease J. Biol. Chem. 2003, 278, 46179-46187
    • (2003) J. Biol. Chem. , vol.278 , pp. 46179-46187
    • Murakami, K.1    Irie, K.2    Morimoto, A.3    Ohigashi, H.4    Shindo, M.5    Nagao, M.6    Shimizu, T.7    Shirasawa, T.8
  • 14
    • 0037195098 scopus 로고    scopus 로고
    • Stabilities and conformations of Alzheimer's β-amyloid peptide oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence effects
    • Ma, B.; Nussinov, R. Stabilities and conformations of Alzheimer's β-amyloid peptide oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence effects Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 14126-14131
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 14126-14131
    • Ma, B.1    Nussinov, R.2
  • 16
    • 30744433878 scopus 로고    scopus 로고
    • Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils
    • Petkova, A. T.; Yau, W. M.; Tycko, R. Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils Biochemistry 2006, 45, 498-512
    • (2006) Biochemistry , vol.45 , pp. 498-512
    • Petkova, A.T.1    Yau, W.M.2    Tycko, R.3
  • 17
    • 77954892793 scopus 로고    scopus 로고
    • Polymorphism in Alzheimer Aβ amyloid organization reflects conformational selection in a rugged energy landscape
    • Miller, Y.; Ma, B.; Nussinov, R. Polymorphism in Alzheimer Aβ amyloid organization reflects conformational selection in a rugged energy landscape Chem. Rev. 2010, 110, 4820-4838
    • (2010) Chem. Rev. , vol.110 , pp. 4820-4838
    • Miller, Y.1    Ma, B.2    Nussinov, R.3
  • 18
    • 84860377014 scopus 로고    scopus 로고
    • Selective molecular recognition in amyloid growth and transmission and cross-species barriers
    • Ma, B.; Nussinov, R. Selective molecular recognition in amyloid growth and transmission and cross-species barriers J. Mol. Biol. 2012, 421, 172-184
    • (2012) J. Mol. Biol. , vol.421 , pp. 172-184
    • Ma, B.1    Nussinov, R.2
  • 20
    • 77952305367 scopus 로고    scopus 로고
    • β arcades: Recurring motifs in naturally occurring and disease-related amyloid fibrils
    • Kajava, A. V.; Baxa, U.; Steven, A. C. β arcades: recurring motifs in naturally occurring and disease-related amyloid fibrils FASEB J 2010, 24, 1311-1319
    • (2010) FASEB J , vol.24 , pp. 1311-1319
    • Kajava, A.V.1    Baxa, U.2    Steven, A.C.3
  • 21
    • 33644867988 scopus 로고    scopus 로고
    • Structural changes of region 1-16 of the Alzheimer disease amyloid β-peptide upon zinc binding and in vitro aging
    • Zirah, S.; Kozin, S. A.; Mazur, A. K.; Blond, A.; Cheminant, M.; Segalas-Milazzo, I.; Debey, P.; Rebuffat, S. Structural changes of region 1-16 of the Alzheimer disease amyloid β-peptide upon zinc binding and in vitro aging J. Biol. Chem. 2006, 281, 2151-2161
    • (2006) J. Biol. Chem. , vol.281 , pp. 2151-2161
    • Zirah, S.1    Kozin, S.A.2    Mazur, A.K.3    Blond, A.4    Cheminant, M.5    Segalas-Milazzo, I.6    Debey, P.7    Rebuffat, S.8
  • 23
    • 84856298593 scopus 로고    scopus 로고
    • Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: Relevance to the ion channel mechanism of AD pathology
    • Connelly, L.; Jang, H.; Arce, F. T.; Capone, R.; Kotler, S. A.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R. Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: relevance to the ion channel mechanism of AD pathology J. Phys. Chem. B 2012, 116, 1728-1735
    • (2012) J. Phys. Chem. B , vol.116 , pp. 1728-1735
    • Connelly, L.1    Jang, H.2    Arce, F.T.3    Capone, R.4    Kotler, S.A.5    Ramachandran, S.6    Kagan, B.L.7    Nussinov, R.8    Lal, R.9
  • 24
    • 84856262919 scopus 로고    scopus 로고
    • Probing structural features of Alzheimer's amyloid-β pores in bilayers using site-specific amino acid substitutions
    • Capone, R.; Jang, H.; Kotler, S. A.; Kagan, B. L.; Nussinov, R.; Lal, R. Probing structural features of Alzheimer's amyloid-β pores in bilayers using site-specific amino acid substitutions Biochemistry 2012, 51, 776-785
    • (2012) Biochemistry , vol.51 , pp. 776-785
    • Capone, R.1    Jang, H.2    Kotler, S.A.3    Kagan, B.L.4    Nussinov, R.5    Lal, R.6
  • 25
    • 84859622200 scopus 로고    scopus 로고
    • Effects of point substitutions on the structure of toxic Alzheimer's β-amyloid channels: Atomic force microscopy and molecular dynamics simulations
    • Connelly, L.; Jang, H.; Arce, F. T.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R. Effects of point substitutions on the structure of toxic Alzheimer's β-amyloid channels: atomic force microscopy and molecular dynamics simulations Biochemistry 2012, 51, 3031-3038
    • (2012) Biochemistry , vol.51 , pp. 3031-3038
    • Connelly, L.1    Jang, H.2    Arce, F.T.3    Ramachandran, S.4    Kagan, B.L.5    Nussinov, R.6    Lal, R.7
  • 27
    • 0037064291 scopus 로고    scopus 로고
    • The structure of bacterial outer membrane proteins
    • Schulz, G. E. The structure of bacterial outer membrane proteins Biochim. Biophys. Acta 2002, 1565, 308-317
    • (2002) Biochim. Biophys. Acta , vol.1565 , pp. 308-317
    • Schulz, G.E.1
  • 28
    • 34548788549 scopus 로고    scopus 로고
    • Models of β-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process
    • Jang, H.; Zheng, J.; Nussinov, R. Models of β-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process Biophys. J. 2007, 93, 1938-1949
    • (2007) Biophys. J. , vol.93 , pp. 1938-1949
    • Jang, H.1    Zheng, J.2    Nussinov, R.3
  • 29
    • 38949167084 scopus 로고    scopus 로고
    • New structures help the modeling of toxic amyloid β ion channels
    • Jang, H.; Zheng, J.; Lal, R.; Nussinov, R. New structures help the modeling of toxic amyloid β ion channels Trends Biochem. Sci. 2008, 33, 91-100
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 91-100
    • Jang, H.1    Zheng, J.2    Lal, R.3    Nussinov, R.4
  • 30
    • 72549099399 scopus 로고    scopus 로고
    • Misfolded amyloid ion channels present mobile β-sheet subunits in contrast to conventional ion channels
    • Jang, H.; Arce, F. T.; Capone, R.; Ramachandran, S.; Lal, R.; Nussinov, R. Misfolded amyloid ion channels present mobile β-sheet subunits in contrast to conventional ion channels Biophys. J. 2009, 97, 3029-3037
    • (2009) Biophys. J. , vol.97 , pp. 3029-3037
    • Jang, H.1    Arce, F.T.2    Capone, R.3    Ramachandran, S.4    Lal, R.5    Nussinov, R.6
  • 33
    • 70350043396 scopus 로고    scopus 로고
    • K3 fragment of amyloidogenic β2-microglobulin forms ion channels: Implication for dialysis related amyloidosis
    • Mustata, M.; Capone, R.; Jang, H.; Arce, F. T.; Ramachandran, S.; Lal, R.; Nussinov, R. K3 fragment of amyloidogenic β2-microglobulin forms ion channels: implication for dialysis related amyloidosis J. Am. Chem. Soc. 2009, 131, 14938-14945
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 14938-14945
    • Mustata, M.1    Capone, R.2    Jang, H.3    Arce, F.T.4    Ramachandran, S.5    Lal, R.6    Nussinov, R.7
  • 34
    • 77952960621 scopus 로고    scopus 로고
    • Antimicrobial protegrin-1 (PG-1) forms ion channels: MD simulation, AFM, and electrical conductance studies
    • Capone, R.; Mustata, M.; Jang, H.; Arce, F. T.; Nussinov, R.; Lal, R. Antimicrobial protegrin-1 (PG-1) forms ion channels: MD simulation, AFM, and electrical conductance studies Biophys. J. 2010, 98, 2644-2652
    • (2010) Biophys. J. , vol.98 , pp. 2644-2652
    • Capone, R.1    Mustata, M.2    Jang, H.3    Arce, F.T.4    Nussinov, R.5    Lal, R.6
  • 35
    • 58149311146 scopus 로고    scopus 로고
    • Models of toxic β-sheet channels of protegrin-1 suggest a common subunit organization motif shared with toxic Alzheimer β-amyloid ion channels
    • Jang, H.; Ma, B.; Lal, R.; Nussinov, R. Models of toxic β-sheet channels of protegrin-1 suggest a common subunit organization motif shared with toxic Alzheimer β-amyloid ion channels Biophys. J. 2008, 95, 4631-4642
    • (2008) Biophys. J. , vol.95 , pp. 4631-4642
    • Jang, H.1    Ma, B.2    Lal, R.3    Nussinov, R.4
  • 37
    • 0028020035 scopus 로고
    • Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer
    • Woolf, T. B.; Roux, B. Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 11631-11635
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 11631-11635
    • Woolf, T.B.1    Roux, B.2
  • 38
    • 0030038849 scopus 로고    scopus 로고
    • Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer
    • Woolf, T. B.; Roux, B. Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer Proteins 1996, 24, 92-114
    • (1996) Proteins , vol.24 , pp. 92-114
    • Woolf, T.B.1    Roux, B.2
  • 39
    • 33646446451 scopus 로고    scopus 로고
    • Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains
    • Kucerka, N.; Tristram-Nagle, S.; Nagle, J. F. Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains J. Membr. Biol. 2005, 208, 193-202
    • (2005) J. Membr. Biol. , vol.208 , pp. 193-202
    • Kucerka, N.1    Tristram-Nagle, S.2    Nagle, J.F.3
  • 42
    • 33751157933 scopus 로고
    • Solvent-induced forces between two hydrophilic groups
    • Durell, S. R.; Brooks, B. R.; Bennaim, A. Solvent-induced forces between two hydrophilic groups J. Phys. Chem. 1994, 98, 2198-2202
    • (1994) J. Phys. Chem. , vol.98 , pp. 2198-2202
    • Durell, S.R.1    Brooks, B.R.2    Bennaim, A.3
  • 43
    • 58549084816 scopus 로고    scopus 로고
    • Amyloid-β membrane binding and permeabilization are distinct processes influenced separately by membrane charge and fluidity
    • Wong, P. T.; Schauerte, J. A.; Wisser, K. C.; Ding, H.; Lee, E. L.; Steel, D. G.; Gafni, A. Amyloid-β membrane binding and permeabilization are distinct processes influenced separately by membrane charge and fluidity J. Mol. Biol. 2009, 386, 81-96
    • (2009) J. Mol. Biol. , vol.386 , pp. 81-96
    • Wong, P.T.1    Schauerte, J.A.2    Wisser, K.C.3    Ding, H.4    Lee, E.L.5    Steel, D.G.6    Gafni, A.7
  • 47
    • 84862889934 scopus 로고    scopus 로고
    • Molecular interactions of Alzheimer's Aβ protofilaments with lipid membranes
    • Tofoleanu, F.; Buchete, N. V. Molecular interactions of Alzheimer's Aβ protofilaments with lipid membranes J. Mol. Biol. 2012, 421, 572-586
    • (2012) J. Mol. Biol. , vol.421 , pp. 572-586
    • Tofoleanu, F.1    Buchete, N.V.2
  • 48
    • 84866563494 scopus 로고    scopus 로고
    • Alzheimer Aβ peptide interactions with lipid membranes: Fibrils, oligomers and polymorphic amyloid channels
    • Tofoleanu, F.; Buchete, N. V. Alzheimer Aβ peptide interactions with lipid membranes: fibrils, oligomers and polymorphic amyloid channels Prion 2012, 6, 339-345
    • (2012) Prion , vol.6 , pp. 339-345
    • Tofoleanu, F.1    Buchete, N.V.2
  • 51
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman, D.; Argos, P. Knowledge-based protein secondary structure assignment Proteins 1995, 23, 566-579
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.