Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the "Gene Nursery" of Deltaretroviruses

PLoS Computational Biology

Volumn 9, Issue 8, 2013, Pages

  Pavesi, Angelo ^a   Magiorkinis, Gkikas ^b   Karlin, David G ^b  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINS; VIRUSES;

CODON USAGE; FRAME-BASED; GENOMIC REGIONS; HORIZONTAL TRANSFER; NEW APPROACHES; OVERLAPPING GENES; PROTEIN-CODING GENES; REFERENCE SET; VIRAL GENOME; VIRAL PROTEINS;

GENES;

VIRUS PROTEIN;

ARTICLE; CODON USAGE; DNA BASE COMPOSITION; GENE FUNCTION; GENE IDENTIFICATION; GENETIC DATABASE; GENOME ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTIVE VALUE; PROTEIN ANALYSIS; QUALITY CONTROL; RETROVIRUS; REX GENE; RNA TRANSLATION; SENSITIVITY ANALYSIS; SEQUENCE HOMOLOGY; TAX GENE; VIRUS GENE; VIRUS GENOME; VIRUS VIRULENCE;

EID: 84883429374     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003162     Document Type: Article

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