-
1
-
-
0033954256
-
The protein data bank
-
Berman,H.M. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
2
-
-
36749081458
-
Assessment a disorder predictions in CASP7
-
Bordoli,L. et al. (2007) Assessment a disorder predictions in CASP7. Proteins, 69, 129-136.
-
(2007)
Proteins
, vol.69
, pp. 129-136
-
-
Bordoli, L.1
-
3
-
-
0030211964
-
Bagging predictors
-
Breiman,L. (1996) Bagging predictors. Mach Learn, 24, 123-140.
-
(1996)
Mach Learn
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
4
-
-
0035478854
-
Random forests
-
Breiman,L. (2001) Random forests. Mach Learn, 45, 5-32.
-
(2001)
Mach Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
5
-
-
0034853120
-
Structure prediction meta server
-
Bujnicki,J.M. et al. (2001a) Structure prediction meta server. Bioinformatics, 17, 750-751.
-
(2001)
Bioinformatics
, vol.17
, pp. 750-751
-
-
Bujnicki, J.M.1
-
6
-
-
0035698724
-
LiveBench-2: Large-scale automated evaluation of protein structure prediction servers
-
Bujnicki,J.M. et al. (2001b) LiveBench-2: Large-scale automated evaluation of protein structure prediction servers. Proteins, 45 (Suppl. 5), 184-191.
-
(2001)
Proteins
, vol.45
, Issue.SUPPL. 5
, pp. 184-191
-
-
Bujnicki, J.M.1
-
7
-
-
27944488680
-
Accurate prediction of protein disordered regions by mining protein structure data
-
Cheng,J.L. et al. (2005) Accurate prediction of protein disordered regions by mining protein structure data. Data Min Knowl Discov, 11, 213-222.
-
(2005)
Data Min Knowl Discov
, vol.11
, pp. 213-222
-
-
Cheng, J.L.1
-
8
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Doszlanyi,Z. et al. (2005a) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol., 347, 827-839.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 827-839
-
-
Doszlanyi, Z.1
-
9
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Doszlanyi,Z. et al. (2005b) IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics, 21, 3433-3434.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Doszlanyi, Z.1
-
10
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker,A.K. et al. (2001) Intrinsically disordered protein. J. Mol. Graph. Model., 19, 26-59.
-
(2001)
J. Mol. Graph. Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
-
11
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker,A.K. et al. (2002) Intrinsic disorder and protein function. Biochemistry, 41, 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
-
12
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
Dyson,H.J. and Wright,P.E. (2002) Coupling of folding and binding for unstructured proteins. Curr. Opin. Struct. Biol., 12, 54-60.
-
(2002)
Curr. Opin. Struct. Biol
, vol.12
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
13
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson,H.J. and Wright,P.E. (2005) Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol., 6, 197-208.
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
14
-
-
29144499905
-
Working set selection using second order information for training SVM
-
Fan,R.E. et al. (2005) Working set selection using second order information for training SVM. J. Machine Learning Res., 6, 1889-1918.
-
(2005)
J. Machine Learning Res
, vol.6
, pp. 1889-1918
-
-
Fan, R.E.1
-
15
-
-
33748258328
-
(20066) A practical overview of protein disorder prediction methods
-
Ferron,F. et al. (20066) A practical overview of protein disorder prediction methods. Proteins, 65, 1-14.
-
Proteins
, vol.65
, pp. 1-14
-
-
Ferron, F.1
-
16
-
-
0035698589
-
CAFASP2: The second critical assessment of fully automated structure prediction methods
-
Fischer,D. et al. (2001) CAFASP2: The second critical assessment of fully automated structure prediction methods. Proteins, 45 (Suppl. 5) 171-183.
-
(2001)
Proteins
, vol.45
, Issue.SUPPL. 5
, pp. 171-183
-
-
Fischer, D.1
-
17
-
-
0031211090
-
A decision-theoretic generalization of on-line learning and an application to boosting
-
Freund,Y. and Schapire,R.E. (1997) A decision-theoretic generalization of on-line learning and an application to boosting. J. Comput. Sys. Sci. 55, 119-139.
-
(1997)
J. Comput. Sys. Sci
, vol.55
, pp. 119-139
-
-
Freund, Y.1
Schapire, R.E.2
-
18
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
Ginalski,K. et al. (2003) 3D-Jury: A simple approach to improve protein structure predictions. Bioinformatics, 19, 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
-
19
-
-
34547588389
-
PrDOS: Prediction of disordered protein regions from amino acid sequence
-
Ishida,T. and Kinoshita, K. (2007) PrDOS: Prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res., 35, W460-W464.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ishida, T.1
Kinoshita, K.2
-
20
-
-
0242362157
-
Prediction of disordered regions in proteins from position specific score matrices
-
Jones,D.T. and Ward,I.I. (2003) Prediction of disordered regions in proteins from position specific score matrices. Proteins, 53 (Suppl. 6), 573-578.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 573-578
-
-
Jones, D.T.1
Ward, I.I.2
-
21
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding,R. et al. (2003) Protein disorder prediction: Implications for structural proteomics. Structure, 11, 1453-1459.
-
(2003)
Structure
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
-
22
-
-
0034780030
-
Pcons: A neural-network-based consensus predictor that improves fold recognition
-
Lundstrom,J. et al. (2001) Pcons: A neural-network-based consensus predictor that improves fold recognition. Protein Sci., 10, 2354-2362.
-
(2001)
Protein Sci
, vol.10
, pp. 2354-2362
-
-
Lundstrom, J.1
-
23
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews,B.W. (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta, 405, 442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
24
-
-
0242267501
-
Evaluation of disorder predictions in CASP5
-
Melamud,E. and Moult,J. (2003) Evaluation of disorder predictions in CASP5. Protein, 53 (Suppl. 6), 561-565.
-
(2003)
Protein
, vol.53
, Issue.SUPPL. 6
, pp. 561-565
-
-
Melamud, E.1
Moult, J.2
-
25
-
-
17844399803
-
Addressing the intrinsic disorder bottleneck in structural proteomics
-
Oldfield,C.J. et al. (2005) Addressing the intrinsic disorder bottleneck in structural proteomics. Proteins, 59, 444-453.
-
(2005)
Proteins
, vol.59
, pp. 444-453
-
-
Oldfield, C.J.1
-
26
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng,K. et al. (2006) Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics, 7, 208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
-
27
-
-
24044515001
-
FokdIndex: A simple tool to predict whether a given protein sequence is intrisically unfolded
-
Prilusky,J. et al. (2005) FokdIndex: A simple tool to predict whether a given protein sequence is intrisically unfolded. Bioinformatics, 21, 3435-3438.
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
-
28
-
-
33744814686
-
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
-
Romero,P.R. et al. (2006) Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. Proc. Natl Acad. Sci. U S A, 103, 8390-8395.
-
(2006)
Proc. Natl Acad. Sci. U S A
, vol.103
, pp. 8390-8395
-
-
Romero, P.R.1
-
29
-
-
20844435796
-
Meta-DP: Domain prediction meta-server
-
Saini,H.K. and Fischer,D. (2005) Meta-DP: Domain prediction meta-server. Bioinformatics, 21, 2917-2920.
-
(2005)
Bioinformatics
, vol.21
, pp. 2917-2920
-
-
Saini, H.K.1
Fischer, D.2
-
30
-
-
34548738213
-
POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix
-
Shimizu,K. et al. (2007) POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Bioinformatics, 23, 2337-2338.
-
(2007)
Bioinformatics
, vol.23
, pp. 2337-2338
-
-
Shimizu, K.1
-
31
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky,V.N. (2002) Natively unfolded proteins: A point where biology waits for physics. Protein Sci., 11, 739-756.
-
(2002)
Protein Sci
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
32
-
-
25144472591
-
Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
-
Uversky,V.N. et al. (2005) Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling. J. Mol. Recognit., 18, 343-384.
-
(2005)
J. Mol. Recognit
, vol.18
, pp. 343-384
-
-
Uversky, V.N.1
-
34
-
-
23144438711
-
PISCES: Recent improvements to a PDB sequence culling server
-
Wang,G. and Dunbrack,R.L. Jr. (2005) PISCES: Recent improvements to a PDB sequence culling server. Nucleic Acids Res., 33, W94-W98.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Wang, G.1
Dunbrack Jr., R.L.2
-
35
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward,J.J. et al. (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol., 337, 635-645.
-
(2004)
J. Mol. Biol
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
-
36
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
Wright,P.E. and Dyson,H.J. (1999) Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 293, 321-331
-
(1999)
J. Mol. Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
37
-
-
0027457620
-
Receiver-operating characteristic (ROC) plots: A fundamental evaluation tool in clinical medicine
-
Zweig,M.H. and Campbell,G. (1993) Receiver-operating characteristic (ROC) plots: A fundamental evaluation tool in clinical medicine. Clin. Chem, 39, 561-577.
-
(1993)
Clin. Chem
, vol.39
, pp. 561-577
-
-
Zweig, M.H.1
Campbell, G.2
|