메뉴 건너뛰기




Volumn 21, Issue 3, 2005, Pages 282-292

Detecting overlapping coding sequences with pairwise alignments

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANALYTIC METHOD; ARTICLE; COMPUTER SIMULATION; CONTROLLED STUDY; ESCHERICHIA COLI; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CODE; GENETIC VARIABILITY; HEPATITIS B VIRUS; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EVOLUTION; MOLECULAR SIZE; MONTE CARLO METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; SALMONELLA TYPHIMURIUM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; STATISTICAL DISTRIBUTION; STATISTICAL MODEL;

EID: 13844294363     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti007     Document Type: Article
Times cited : (39)

References (18)
  • 1
    • 0025292004 scopus 로고
    • Phosphoprotein and nucleocapsid protein evolution of vesicular stomatitis virus New Jersey
    • Bilsel,P.A., Rowe,J.E., Fitch,W.M. and Nichol,S.T. (1990) Phosphoprotein and nucleocapsid protein evolution of vesicular stomatitis virus New Jersey. J. Virol., 64, 2498-2504.
    • (1990) J. Virol. , vol.64 , pp. 2498-2504
    • Bilsel, P.A.1    Rowe, J.E.2    Fitch, W.M.3    Nichol, S.T.4
  • 2
    • 0030457112 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh,P.J. (1996) Programmed translational frameshifting. Annu. Rev. Genet., 30, 507-528.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 507-528
    • Farabaugh, P.J.1
  • 3
    • 0345490693 scopus 로고    scopus 로고
    • On dynamics of overlapping genes in bacterial genomes
    • Fukuda,Y., Nakayama,Y. and Tomita,M. (2003) On dynamics of overlapping genes in bacterial genomes. Gene, 323, 181-187.
    • (2003) Gene , vol.323 , pp. 181-187
    • Fukuda, Y.1    Nakayama, Y.2    Tomita, M.3
  • 4
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman,N. and Yang,Z. (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol., 11, 725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 5
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad Sci. USA, 89, 10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 6
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins,D., Thompson,J. and Gibson,T. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3
  • 8
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura,M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 11
    • 0033921799 scopus 로고    scopus 로고
    • Detection of signature sequences in overlapping genes and prediction of a novel overlapping gene in hepatitis G virus
    • Pavesi,A. (2000) Detection of signature sequences in overlapping genes and prediction of a novel overlapping gene in hepatitis G virus. J. Mol. Evol., 50, 284-295.
    • (2000) J. Mol. Evol. , vol.50 , pp. 284-295
    • Pavesi, A.1
  • 12
    • 0030976687 scopus 로고    scopus 로고
    • On the informational content of overlapping genes in prokaryotic and eukaryotic viruses
    • Pavesi,A., Iaco,B., Granero,M.I. and Porati,A. (1997) On the informational content of overlapping genes in prokaryotic and eukaryotic viruses. J. Mol. Evol., 44, 625-631.
    • (1997) J. Mol. Evol. , vol.44 , pp. 625-631
    • Pavesi, A.1    Iaco, B.2    Granero, M.I.3    Porati, A.4
  • 13
    • 0346732315 scopus 로고    scopus 로고
    • Gene fusion and overlapping reading frames in the mammalian genes for 4E-BP3 and MASK
    • Poulin,F., Brueschke,A. and Sonenberg,N. (2003) Gene fusion and overlapping reading frames in the mammalian genes for 4E-BP3 and MASK. J. Biol. Chem., 278, 52290-52297.
    • (2003) J. Biol. Chem. , vol.278 , pp. 52290-52297
    • Poulin, F.1    Brueschke, A.2    Sonenberg, N.3
  • 14
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice,P., Longden,I. and Bleasby,A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 16
  • 17
    • 0037432747 scopus 로고    scopus 로고
    • Defining genes in the genomics era
    • Snyder,M. and Gerstein,M. (2003) Defining genes in the genomics era. Science, 300, 258-260.
    • (2003) Science , vol.300 , pp. 258-260
    • Snyder, M.1    Gerstein, M.2
  • 18
    • 0034069452 scopus 로고    scopus 로고
    • Gene-finding approaches for eukaryotes
    • Stormo,G.D. (2000) Gene-finding approaches for eukaryotes. Genome Res., 10, 394-397.
    • (2000) Genome Res. , vol.10 , pp. 394-397
    • Stormo, G.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.