-
1
-
-
0142028990
-
An evolutionary analysis of orphan genes in Drosophila
-
10.1101/gr.1311003, 403679, 14525923
-
Domazet- Lošo T, Tautz D. An evolutionary analysis of orphan genes in Drosophila. Genome Res 2003, 13:2213-2219. 10.1101/gr.1311003, 403679, 14525923.
-
(2003)
Genome Res
, vol.13
, pp. 2213-2219
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
2
-
-
69449089723
-
More than just orphans: are taxonomically-restricted genes important in evolution
-
10.1016/j.tig.2009.07.006, 19716618
-
Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TCG. More than just orphans: are taxonomically-restricted genes important in evolution. Trends Genet 2009, 25:404-413. 10.1016/j.tig.2009.07.006, 19716618.
-
(2009)
Trends Genet
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
Hemmrich, G.2
Fraune, S.3
Augustin, R.4
Bosch, T.C.G.5
-
3
-
-
80052969570
-
The evolutionary origin of orphan genes
-
Tautz D, Domazet- Lošo T. The evolutionary origin of orphan genes. Nat Rev Genet 2011, 12:692-702.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 692-702
-
-
Tautz, D.1
Domazet-Lošo, T.2
-
4
-
-
0037500141
-
Evolution by gene duplication: an update
-
Zhang JZ. Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18:292-298.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.Z.1
-
5
-
-
78649231644
-
Origins, evolution, and phenotypic impact of new genes
-
10.1101/gr.101386.109, 2945180, 20651121
-
Kaessmann H. Origins, evolution, and phenotypic impact of new genes. Genome Res 2010, 20:1313-1326. 10.1101/gr.101386.109, 2945180, 20651121.
-
(2010)
Genome Res
, vol.20
, pp. 1313-1326
-
-
Kaessmann, H.1
-
6
-
-
77958497573
-
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
-
10.1093/gbe/evq019, 2997544, 20624743
-
Cai JJ, Petrov DA. Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol Evol 2010, 2:393-409. 10.1093/gbe/evq019, 2997544, 20624743.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 393-409
-
-
Cai, J.J.1
Petrov, D.A.2
-
7
-
-
70349637633
-
Darwinian alchemy: Human genes from noncoding DNA
-
10.1101/gr.098376.109, 2765273, 19797681
-
Siepel A. Darwinian alchemy: Human genes from noncoding DNA. Genome Res 2009, 19:1693-1695. 10.1101/gr.098376.109, 2765273, 19797681.
-
(2009)
Genome Res
, vol.19
, pp. 1693-1695
-
-
Siepel, A.1
-
8
-
-
33745585334
-
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
-
10.1073/pnas.0509809103, 1502557, 16777968
-
Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci USA 2006, 103:9935-9939. 10.1073/pnas.0509809103, 1502557, 16777968.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 9935-9939
-
-
Levine, M.T.1
Jones, C.D.2
Kern, A.D.3
Lindfors, H.A.4
Begun, D.J.5
-
9
-
-
34250748633
-
Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba Drosophila erecta clade
-
1894579, 17435230
-
Begun DJ, Lindfors HA, Kern AD, Jones CD. Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba Drosophila erecta clade. Genetics 2007, 176:1131-1137. 1894579, 17435230.
-
(2007)
Genetics
, vol.176
, pp. 1131-1137
-
-
Begun, D.J.1
Lindfors, H.A.2
Kern, A.D.3
Jones, C.D.4
-
10
-
-
50649097020
-
On the origin of new genes in Drosophila
-
10.1101/gr.076588.108, 2527705, 18550802
-
Zhou Q, Zhang GJ, Zhang Y, Xu SY, Zhao RP. On the origin of new genes in Drosophila. Genome Res 2008, 18:1446-1455. 10.1101/gr.076588.108, 2527705, 18550802.
-
(2008)
Genome Res
, vol.18
, pp. 1446-1455
-
-
Zhou, Q.1
Zhang, G.J.2
Zhang, Y.3
Xu, S.Y.4
Zhao, R.P.5
-
11
-
-
50649090652
-
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
-
10.1534/genetics.107.084491, 2390625, 18493065
-
Cai J, Zhao RP, Jiang HF, Wang W. De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 2008, 179:487-496. 10.1534/genetics.107.084491, 2390625, 18493065.
-
(2008)
Genetics
, vol.179
, pp. 487-496
-
-
Cai, J.1
Zhao, R.P.2
Jiang, H.F.3
Wang, W.4
-
12
-
-
77950801106
-
A human-specific De novo protein-coding gene associated with human brain functions
-
10.1371/journal.pcbi.1000734, 2845654, 20376170
-
Li C-Y, Zhang Y, Wang Zhang Y, Cao C, Zhang PW. A human-specific De novo protein-coding gene associated with human brain functions. PLoS Comput Biol 2010, 6(3):e1000734. 10.1371/journal.pcbi.1000734, 2845654, 20376170.
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.3
-
-
Li, C.-Y.1
Zhang, Y.2
Wang Zhang, Y.3
Cao, C.4
Zhang, P.W.5
-
13
-
-
70349270547
-
Emergence of a New gene from an intergenic region
-
10.1016/j.cub.2009.07.049, 19733073
-
Heinen T, Staubach F, Haming D, Tautz D. Emergence of a New gene from an intergenic region. Curr Biol 2009, 19:1527-1531. 10.1016/j.cub.2009.07.049, 19733073.
-
(2009)
Curr Biol
, vol.19
, pp. 1527-1531
-
-
Heinen, T.1
Staubach, F.2
Haming, D.3
Tautz, D.4
-
14
-
-
79951580190
-
De novo origin of new genes with introns in Plasmodium vivax
-
10.1016/j.febslet.2011.01.017, 21241695
-
Yang ZF, Huang JL. De novo origin of new genes with introns in Plasmodium vivax. FEBS Lett 2011, 585:641-644. 10.1016/j.febslet.2011.01.017, 21241695.
-
(2011)
FEBS Lett
, vol.585
, pp. 641-644
-
-
Yang, Z.F.1
Huang, J.L.2
-
15
-
-
79951566081
-
Evolutionary origins of brassicaceae specific genes in Arabidopsis thaliana
-
10.1186/1471-2148-11-47, 3049755, 21332978
-
Donoghue MT, Keshavaiah C, Swamidatta SH, Spillane C. Evolutionary origins of brassicaceae specific genes in Arabidopsis thaliana. BMC Evol Biol 2011, 11:47. 10.1186/1471-2148-11-47, 3049755, 21332978.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 47
-
-
Donoghue, M.T.1
Keshavaiah, C.2
Swamidatta, S.H.3
Spillane, C.4
-
16
-
-
70349645640
-
Recent de novo origin of human protein-coding genes
-
10.1101/gr.095026.109, 2765279, 19726446
-
Knowles DG, McLysaght A. Recent de novo origin of human protein-coding genes. Genome Res 2009, 19:1752-1759. 10.1101/gr.095026.109, 2765279, 19726446.
-
(2009)
Genome Res
, vol.19
, pp. 1752-1759
-
-
Knowles, D.G.1
McLysaght, A.2
-
17
-
-
77950521826
-
A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand
-
10.1038/cr.2010.31, 20195295
-
Li D, Dong Y, Jiang Y, Jiang HF, Cai J. A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand. Cell Res 2010, 20:408-420. 10.1038/cr.2010.31, 20195295.
-
(2010)
Cell Res
, vol.20
, pp. 408-420
-
-
Li, D.1
Dong, Y.2
Jiang, Y.3
Jiang, H.F.4
Cai, J.5
-
18
-
-
81755187310
-
De novo origin of human protein-coding genes
-
10.1371/journal.pgen.1002379, 3213175, 22102831
-
Wu DD, Irwin DM, Zhang YP. De novo origin of human protein-coding genes. PLoS Genet 2011, 7(11):e1002379. 10.1371/journal.pgen.1002379, 3213175, 22102831.
-
(2011)
PLoS Genet
, vol.7
, Issue.11
-
-
Wu, D.D.1
Irwin, D.M.2
Zhang, Y.P.3
-
19
-
-
84857384562
-
Putatively Noncoding transcripts show extensive association with ribosomes
-
10.1093/gbe/evr099, 3209793, 21948395
-
Wilson BA, Masel J. Putatively Noncoding transcripts show extensive association with ribosomes. Genome Biol Evol 2011, 3:1245-1252. 10.1093/gbe/evr099, 3209793, 21948395.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1245-1252
-
-
Wilson, B.A.1
Masel, J.2
-
20
-
-
84863988094
-
Proto-genes and de novo gene birth
-
10.1038/nature11184, 3401362, 22722833
-
Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA. Proto-genes and de novo gene birth. Nature 2012, 487:370-374. 10.1038/nature11184, 3401362, 22722833.
-
(2012)
Nature
, vol.487
, pp. 370-374
-
-
Carvunis, A.R.1
Rolland, T.2
Wapinski, I.3
Calderwood, M.A.4
Yildirim, M.A.5
-
21
-
-
35748936426
-
A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages
-
10.1016/j.tig.2007.08.014, 18029048
-
Domazet- Lošo T, Brajkovic J, Tautz D. A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends Genet 2007, 23:533-539. 10.1016/j.tig.2007.08.014, 18029048.
-
(2007)
Trends Genet
, vol.23
, pp. 533-539
-
-
Domazet-Lošo, T.1
Brajkovic, J.2
Tautz, D.3
-
22
-
-
56449113261
-
An ancient evolutionary origin of genes associated with human genetic diseases
-
10.1093/molbev/msn214, 2582983, 18820252
-
Domazet- Lošo T, Tautz D. An ancient evolutionary origin of genes associated with human genetic diseases. Mol Biol Evol 2008, 25:2699-2707. 10.1093/molbev/msn214, 2582983, 18820252.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2699-2707
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
23
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
10.1186/1741-7007-8-66, 2880965, 20492640
-
Domazet- Lošo T, Tautz D. Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol 2010, 8:66. 10.1186/1741-7007-8-66, 2880965, 20492640.
-
(2010)
BMC Biol
, vol.8
, pp. 66
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
24
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
10.1038/nature09632, 21150997
-
Domazet- Lošo T, Tautz D. A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 2010, 468:815-818. 10.1038/nature09632, 21150997.
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
25
-
-
84867068639
-
A transcriptomic hourglass in plant embryogenesis
-
10.1038/nature11394, 22951968
-
Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. A transcriptomic hourglass in plant embryogenesis. Nature 2012, 490:98-101. 10.1038/nature11394, 22951968.
-
(2012)
Nature
, vol.490
, pp. 98-101
-
-
Quint, M.1
Drost, H.G.2
Gabel, A.3
Ullrich, K.K.4
Bönn, M.5
Grosse, I.6
-
27
-
-
0026722407
-
Origins of genes - big-bang or continuous creation
-
10.1073/pnas.89.20.9489, 50157, 1329098
-
Keese PK, Gibbs A. Origins of genes - big-bang or continuous creation. Proc Natl Acad Sci USA 1992, 89:9489-9493. 10.1073/pnas.89.20.9489, 50157, 1329098.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 9489-9493
-
-
Keese, P.K.1
Gibbs, A.2
-
28
-
-
70349737853
-
Overlapping genes produce proteins with unusual sequence properties and offer insight into De novo protein creation
-
10.1128/JVI.00595-09, 2753099, 19640978
-
Rancurel C, Khosravi M, Dunker AK, Romero PR, Karlin D. Overlapping genes produce proteins with unusual sequence properties and offer insight into De novo protein creation. J Virol 2009, 83:10719-10736. 10.1128/JVI.00595-09, 2753099, 19640978.
-
(2009)
J Virol
, vol.83
, pp. 10719-10736
-
-
Rancurel, C.1
Khosravi, M.2
Dunker, A.K.3
Romero, P.R.4
Karlin, D.5
-
29
-
-
84869060468
-
Evolution of viral proteins originated De novo by overprinting
-
10.1093/molbev/mss179, 3494269, 22821011
-
Sabath N, Wagner A, Karlin D. Evolution of viral proteins originated De novo by overprinting. Mol Biol Evol 2012, 29:3767-3780. 10.1093/molbev/mss179, 3494269, 22821011.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3767-3780
-
-
Sabath, N.1
Wagner, A.2
Karlin, D.3
-
30
-
-
0035898609
-
Two overlapping reading frames in a single exon encode interacting proteins - a novel way of gene usage
-
10.1093/emboj/20.14.3849, 125537, 11447126
-
Klemke M, Kehlenbach RH, Huttner WB. Two overlapping reading frames in a single exon encode interacting proteins - a novel way of gene usage. EMBO J 2001, 20:3849-3860. 10.1093/emboj/20.14.3849, 125537, 11447126.
-
(2001)
EMBO J
, vol.20
, pp. 3849-3860
-
-
Klemke, M.1
Kehlenbach, R.H.2
Huttner, W.B.3
-
31
-
-
55449135271
-
Oscillating evolution of a mammalian locus with overlapping reading frames: An XL alpha s/ALEX relay
-
Nekrutenko A, Wadhawan S, Goetting-Minesky P, Makova KD. Oscillating evolution of a mammalian locus with overlapping reading frames: An XL alpha s/ALEX relay. PLoS Genet 2005, 1:197-204.
-
(2005)
PLoS Genet
, vol.1
, pp. 197-204
-
-
Nekrutenko, A.1
Wadhawan, S.2
Goetting-Minesky, P.3
Makova, K.D.4
-
32
-
-
33747819484
-
Divorcing ARF and p53: an unsettled case
-
10.1038/nrc1954, 16915296
-
Sherr CJ. Divorcing ARF and p53: an unsettled case. Nat Rev Cancer 2006, 6:663-673. 10.1038/nrc1954, 16915296.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 663-673
-
-
Sherr, C.J.1
-
33
-
-
34249719998
-
A first look at ARFome: Dual-coding genes in mammalian Genomes
-
Chung WY, Wadhawan S, Szklarczyk R, Pond SK, Nekrutenko A. A first look at ARFome: Dual-coding genes in mammalian Genomes. PLoS Comp Biol 2007, 3:855-861.
-
(2007)
PLoS Comp Biol
, vol.3
, pp. 855-861
-
-
Chung, W.Y.1
Wadhawan, S.2
Szklarczyk, R.3
Pond, S.K.4
Nekrutenko, A.5
-
34
-
-
34247488321
-
On homology searches by protein Blast and the characterization of the age of genes
-
10.1186/1471-2148-7-53, 1855329, 17408474
-
Alba MM, Castresana J. On homology searches by protein Blast and the characterization of the age of genes. BMC Evol Biol 2007, 7:53. 10.1186/1471-2148-7-53, 1855329, 17408474.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 53
-
-
Alba, M.M.1
Castresana, J.2
-
35
-
-
0347568598
-
The relationship of protein conservation and sequence length
-
10.1186/1471-2148-2-20, 137605, 12410938
-
Lipman DJ, Souvorov A, Koonin EV, Panchenko AR, Tatusova TA. The relationship of protein conservation and sequence length. BMC Evol Biol 2002, 2:20. 10.1186/1471-2148-2-20, 137605, 12410938.
-
(2002)
BMC Evol Biol
, vol.2
, pp. 20
-
-
Lipman, D.J.1
Souvorov, A.2
Koonin, E.V.3
Panchenko, A.R.4
Tatusova, T.A.5
-
36
-
-
66149123308
-
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
-
10.1073/pnas.0901808106, 2666616, 19351897
-
Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ. The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc Natl Acad Sci USA 2009, 106:7273-7280. 10.1073/pnas.0901808106, 2666616, 19351897.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7273-7280
-
-
Wolf, Y.I.1
Novichkov, P.S.2
Karev, G.P.3
Koonin, E.V.4
Lipman, D.J.5
-
37
-
-
62749097935
-
Genomic and structural aspects of protein evolution
-
10.1042/BJ20090122, 19272021
-
Chothia C, Gough J. Genomic and structural aspects of protein evolution. Biochem J 2009, 419:15-28. 10.1042/BJ20090122, 19272021.
-
(2009)
Biochem J
, vol.419
, pp. 15-28
-
-
Chothia, C.1
Gough, J.2
-
38
-
-
84155175837
-
Bateman A (2010) Quantifying the mechanisms of domain gain in animal proteins
-
10.1186/gb-2010-11-7-r74, 2926785, 20633280
-
Buljan M, Frankish A. Bateman A (2010) Quantifying the mechanisms of domain gain in animal proteins. Genome Biol 2010, 11:R74. 10.1186/gb-2010-11-7-r74, 2926785, 20633280.
-
(2010)
Genome Biol
, vol.11
-
-
Buljan, M.1
Frankish, A.2
-
39
-
-
34250867288
-
Takusan: A large gene family that regulates synaptic activity
-
10.1016/j.neuron.2007.06.021, 2902460, 17610818
-
Tu SC, Shin Y, Zago WM, States BA, Eroshkin A. Takusan: A large gene family that regulates synaptic activity. Neuron 2007, 55:69-85. 10.1016/j.neuron.2007.06.021, 2902460, 17610818.
-
(2007)
Neuron
, vol.55
, pp. 69-85
-
-
Tu, S.C.1
Shin, Y.2
Zago, W.M.3
States, B.A.4
Eroshkin, A.5
-
40
-
-
0842344465
-
A conserved non-homeodomain Hoxa9 isoform interacting with CBP is co-expressed with the 'typical' Hoxa9 protein during embryogenesis
-
10.1016/j.modgep.2003.08.006, 15161102
-
Dintilhac A, Bihan R, Guerrier D, Deschamps S, Pellerin I. A conserved non-homeodomain Hoxa9 isoform interacting with CBP is co-expressed with the 'typical' Hoxa9 protein during embryogenesis. Gene Expr Patterns 2004, 4:215-222. 10.1016/j.modgep.2003.08.006, 15161102.
-
(2004)
Gene Expr Patterns
, vol.4
, pp. 215-222
-
-
Dintilhac, A.1
Bihan, R.2
Guerrier, D.3
Deschamps, S.4
Pellerin, I.5
-
41
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
3245097, 22096229
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 2011, 40:D306-D312. 3245097, 22096229.
-
(2011)
Nucleic Acids Res
, vol.40
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
-
42
-
-
33751204154
-
Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level
-
10.1186/1471-2148-6-91, 1654190, 17090320
-
Pal LR, Guda C. Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level. BMC Evol Biol 2006, 6:91. 10.1186/1471-2148-6-91, 1654190, 17090320.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 91
-
-
Pal, L.R.1
Guda, C.2
-
43
-
-
84855873427
-
The dynamics and evolutionary potential of domain loss and emergence
-
10.1093/molbev/msr250, 3258042, 22016574
-
Moore AD, Bornberg-Bauer E. The dynamics and evolutionary potential of domain loss and emergence. Mol Biol Evol 2012, 29:787-796. 10.1093/molbev/msr250, 3258042, 22016574.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 787-796
-
-
Moore, A.D.1
Bornberg-Bauer, E.2
-
44
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
10.1038/nrm1589, 15738986
-
Dyson HJ, Wright PE. Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 2005, 6:197-208. 10.1038/nrm1589, 15738986.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
46
-
-
79958059909
-
Protein disorder - a breakthrough invention of evolution
-
10.1016/j.sbi.2011.03.014, 21514145
-
Schlessinger A, Schaefer C, Vicedo E, Schmidberger M, Punta M. Protein disorder - a breakthrough invention of evolution. Curr Opin Struct Biol 2011, 21:412-418. 10.1016/j.sbi.2011.03.014, 21514145.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 412-418
-
-
Schlessinger, A.1
Schaefer, C.2
Vicedo, E.3
Schmidberger, M.4
Punta, M.5
-
47
-
-
77951115595
-
RNA dust: where are the genes
-
10.1093/dnares/dsq006, 2853385, 20211845
-
Carninci P. RNA dust: where are the genes. DNA Res 2010, 17:51-59. 10.1093/dnares/dsq006, 2853385, 20211845.
-
(2010)
DNA Res
, vol.17
, pp. 51-59
-
-
Carninci, P.1
-
48
-
-
79960911703
-
The reality of pervasive transcription
-
10.1371/journal.pbio.1000625, 3134446, 21765801
-
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ. The reality of pervasive transcription. PLoS Biol 2011, 9:e1000625. 10.1371/journal.pbio.1000625, 3134446, 21765801.
-
(2011)
PLoS Biol
, vol.9
-
-
Clark, M.B.1
Amaral, P.P.2
Schlesinger, F.J.3
Dinger, M.E.4
Taft, R.J.5
-
49
-
-
57849140661
-
Divergent transcription from active promotors
-
10.1126/science.1162253, 2692996, 19056940
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA. Divergent transcription from active promotors. Science 2008, 322:1849-1851. 10.1126/science.1162253, 2692996, 19056940.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
50
-
-
69249215400
-
Divergent transcription: a new feature of active promotors
-
10.4161/cc.8.16.9305, 19597342
-
Seila AC, Core LJ, Lis JT, Sharp PA. Divergent transcription: a new feature of active promotors. Cell Cycle 2009, 8:2557-2564. 10.4161/cc.8.16.9305, 19597342.
-
(2009)
Cell Cycle
, vol.8
, pp. 2557-2564
-
-
Seila, A.C.1
Core, L.J.2
Lis, J.T.3
Sharp, P.A.4
-
51
-
-
63849172766
-
Polycistronic peptide coding genes in eukaryotes - how widespread are they?
-
Tautz D. Polycistronic peptide coding genes in eukaryotes - how widespread are they?. Brief Funct Gen Proteom 2008, 8:68-74.
-
(2008)
Brief Funct Gen Proteom
, vol.8
, pp. 68-74
-
-
Tautz, D.1
-
52
-
-
79953176250
-
Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
-
10.1038/ng.790, 21423180
-
Ruf S, Symmons O, Uslu VV, Dolle D, Hot C. Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor. Nat Genet 2011, 43:379-341. 10.1038/ng.790, 21423180.
-
(2011)
Nat Genet
, vol.43
, pp. 379-1341
-
-
Ruf, S.1
Symmons, O.2
Uslu, V.V.3
Dolle, D.4
Hot, C.5
-
53
-
-
60149097110
-
Origin of primate orphan genes: a comparative genomics approach
-
Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L. Origin of primate orphan genes: a comparative genomics approach. Mol Biol Evol 2009, 26:603-612.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 603-612
-
-
Toll-Riera, M.1
Bosch, N.2
Bellora, N.3
Castelo, R.4
Armengol, L.5
-
54
-
-
77449140452
-
Identifying and quantifying orphan protein sequences in fungi
-
10.1016/j.jmb.2009.11.053, 19944701
-
Ekman D, Elofsson A. Identifying and quantifying orphan protein sequences in fungi. J Mol Biol 2010, 396:396-405. 10.1016/j.jmb.2009.11.053, 19944701.
-
(2010)
J Mol Biol
, vol.396
, pp. 396-405
-
-
Ekman, D.1
Elofsson, A.2
-
55
-
-
78651289449
-
Ensembl 2011
-
10.1093/nar/gkq1064, 3013672, 21045057
-
Flicek P, Amode MR, Barrell D, Beal K, Brent S. Ensembl 2011. Nucleic Acids Res 2011, 39:D800-D806. 10.1093/nar/gkq1064, 3013672, 21045057.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
-
56
-
-
84855731050
-
Ensembl BioMarts: a hub for data retrieval across taxonomic space
-
bar030
-
Kinsella RJ, Kahari A, Haider S, Zamora J, Proctor G. Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database 2011, bar030.
-
(2011)
Database
-
-
Kinsella, R.J.1
Kahari, A.2
Haider, S.3
Zamora, J.4
Proctor, G.5
-
57
-
-
84863304598
-
-
Vienna, Austria: R Foundation for Statistical Computing, R Core Team
-
R Core Team R: A language and environment for statistical computing 2012, Vienna, Austria: R Foundation for Statistical Computing, R Core Team.
-
(2012)
R: A language and environment for statistical computing
-
-
-
59
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
10.1101/gr.092759.109, 2752132, 19541911
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R. Circos: An information aesthetic for comparative genomics. Genome Res 2009, 19:1639-1645. 10.1101/gr.092759.109, 2752132, 19541911.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
-
60
-
-
0036079158
-
The human genome browser at UCSC
-
186604, 12045153
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH. The human genome browser at UCSC. Genome Res 2002, 12:996-1006. 186604, 12045153.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
61
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
10.1093/nar/gkq963, 3242726, 20959295
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D. The UCSC Genome Browser database: update 2011. Nucleic Acids Res 2011, 39:D876-D882. 10.1093/nar/gkq963, 3242726, 20959295.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
-
62
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
10.1093/nar/gkh103, 308837, 14681465
-
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW. The UCSC Table Browser data retrieval tool. Nucleic Acids Res 2004, 32:D493-D496. 10.1093/nar/gkh103, 308837, 14681465.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
-
63
-
-
84865121188
-
An encyclopedia of mouse DNA elements (Mouse ENCODE)
-
3491367, 22889292, Mouse ENCODE Consortium, Stamatoyannopoulos, J
-
Snyder M, Hardison R, Ren B, Gingeras T, Gilbert D, Groudine M, Bender M, Kaul R, Mouse ENCODE Consortium, Stamatoyannopoulos, J An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol 2012, 13:418. 3491367, 22889292, Mouse ENCODE Consortium, Stamatoyannopoulos, J.
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
Snyder, M.1
Hardison, R.2
Ren, B.3
Gingeras, T.4
Gilbert, D.5
Groudine, M.6
Bender, M.7
Kaul, R.8
-
64
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
10.1093/bioinformatics/btq033, 2832824, 20110278
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26:841-842. 10.1093/bioinformatics/btq033, 2832824, 20110278.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
65
-
-
33947219859
-
The functional landscape of mouse gene expression
-
10.1186/jbiol16, 549719, 15588312
-
Zhang W, Morris Q, Chang R, Shai O, Bakowski M, Mitsakakis N, Mohammad N, Robinson M, Zirngibl R, Somogyi E. The functional landscape of mouse gene expression. J Biol 2004, 3:21. 10.1186/jbiol16, 549719, 15588312.
-
(2004)
J Biol
, vol.3
, pp. 21
-
-
Zhang, W.1
Morris, Q.2
Chang, R.3
Shai, O.4
Bakowski, M.5
Mitsakakis, N.6
Mohammad, N.7
Robinson, M.8
Zirngibl, R.9
Somogyi, E.10
-
66
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
187518, 11932250
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
67
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
10.1016/S0168-9525(00)02024-2, 10827456
-
Rice P, Longden I, Bleasby A. EMBOSS: The European molecular biology open software suite. Trends Genet 2000, 16:276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
68
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
-
69
-
-
59949096873
-
EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates
-
2652215, 19029536
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 2009, 19:327-335. 2652215, 19029536.
-
(2009)
Genome Res
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
|