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Volumn 1, Issue 3, 2010, Pages

Frequency analysis techniques for identification of viral genetic data

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; SINGLE STRANDED RNA;

EID: 79952175841     PISSN: None     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00156-10     Document Type: Article
Times cited : (19)

References (20)
  • 1
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardi, E. 2008. The impact of next-generation sequencing technology on genetics. Trends Genet. 24:133-141.
    • (2008) Trends Genet. , vol.24 , pp. 133-141
    • Mardi, E.1
  • 6
    • 39649084637 scopus 로고    scopus 로고
    • Bioinformatics challenges of new sequencing technology
    • Pop, M., and S. Salzberg. 2008. Bioinformatics challenges of new sequencing technology. Trends Genet. 24:142-149.
    • (2008) Trends Genet. , vol.24 , pp. 142-149
    • Pop, M.1    Salzberg, S.2
  • 8
    • 33749443207 scopus 로고    scopus 로고
    • Towards a unifying approach to diversity measures: Bridging the gap between the Shannon entropy and Rao's quadratic index
    • Ricotta, C., and L. Szeidl. 2006. Towards a unifying approach to diversity measures: bridging the gap between the Shannon entropy and Rao's quadratic index. Theor. Popul. Biol. 70:237-243.
    • (2006) Theor. Popul. Biol. , vol.70 , pp. 237-243
    • Ricotta, C.1    Szeidl, L.2
  • 9
    • 0034992826 scopus 로고    scopus 로고
    • The closest BLAST hit is often not the nearest neighbor
    • Koski, L., and G. Golding. 2001. The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol. 52:540-542
    • (2001) J. Mol. Evol. , vol.52 , pp. 540-542
    • Koski, L.1    Golding, G.2
  • 10
    • 4344670204 scopus 로고    scopus 로고
    • Application of tetranucleotide frequencies for the assignment of genomic fragments
    • Teeling, H., A. Meyerdierks, M. Bauer, R. Amann, and F. Glöckner. 2004. Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ. Microbiol. 6:938-947.
    • (2004) Environ. Microbiol. , vol.6 , pp. 938-947
    • Teeling, H.1    Meyerdierks, A.2    Bauer, M.3    Amann, R.4    Glöckner, F.5
  • 13
    • 0022743812 scopus 로고
    • A measure of the similarity of sets of sequences not requiring sequence alignment
    • Blaisdell, B. 1986. A measure of the similarity of sets of sequences not requiring sequence alignment. Proc. Natl. Acad. Sci. U. S. A. 83: 5155-5159.
    • (1986) Proc. Natl. Acad. Sci. U. S. A. , vol.83 , pp. 5155-5159
    • Blaisdell, B.1
  • 14
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison: A review
    • Vinga, S., and J. Almeida. 2003. Alignment-free sequence comparison: a review. Bioinformatics 19:513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 15
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin, S., and C. Burge. 1995. Dinucleotide relative abundance extremes: a genomic signature. Trends Genet. 11:283-290.
    • (1995) Trends Genet. , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 16
    • 62449130191 scopus 로고    scopus 로고
    • Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
    • Sims, G., S.-R. Jun, G. Wu, and S.-H. Kim. 2009. Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proc. Natl. Acad. Sci. U. S. A. 106:2677-2682.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 2677-2682
    • Sims, G.1    Jun, S.-R.2    Wu, G.3    Kim, S.-H.4
  • 17
    • 0035013276 scopus 로고    scopus 로고
    • Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
    • Wu, T., Y. Hsieh, and L. Li. 2001. Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition. Biometrics 57:441-443.
    • (2001) Biometrics , vol.57 , pp. 441-443
    • Wu, T.1    Hsieh, Y.2    Li, L.3
  • 18
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S., and S. Altschul. 1990. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. U. S. A. 87:2264-2268.
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.2
  • 19
    • 46449083518 scopus 로고    scopus 로고
    • Patterns of evolution and host gene mimicry in influenza and other RNA viruses
    • Greenbaum, B., A. Levine, G. Bhanot, and R. Rabadan. 2008. Patterns of evolution and host gene mimicry in influenza and other RNA viruses. PLoS Pathog. 4(6):e1000079.
    • (2008) PLoS Pathog. , vol.4 , Issue.6
    • Greenbaum, B.1    Levine, A.2    Bhanot, G.3    Rabadan, R.4
  • 20
    • 67650169079 scopus 로고    scopus 로고
    • Patterns of oligonucleotide sequences in viral and host cellRNAidentify mediators of the host innate immune system
    • Greenbaum, B., R. Rabadan, and A. Levine. 2009. Patterns of oligonucleotide sequences in viral and host cellRNAidentify mediators of the host innate immune system. PLoS One 4(6):e5969.
    • (2009) PLoS One , vol.4 , Issue.6
    • Greenbaum, B.1    Rabadan, R.2    Levine, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.