-
1
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
C. Allmang, J. Kufel, G. Chanfreau, P. Mitchell, E. Petfalski, and D. Tollervey Functions of the exosome in rRNA, snoRNA and snRNA synthesis EMBO J. 18 1999 5399 5410
-
(1999)
EMBO J.
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
Tollervey, D.6
-
2
-
-
0000577868
-
The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
-
J.S. Anderson, and R.P. Parker The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex EMBO J. 17 1998 1497 1506
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Anderson, J.S.1
Parker, R.P.2
-
3
-
-
0035801392
-
Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast
-
Y. Araki, S. Takahashi, T. Kobayashi, H. Kajiho, S. Hoshino, and T. Katada Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast EMBO J. 20 2001 4684 4693
-
(2001)
EMBO J.
, vol.20
, pp. 4684-4693
-
-
Araki, Y.1
Takahashi, S.2
Kobayashi, T.3
Kajiho, H.4
Hoshino, S.5
Katada, T.6
-
4
-
-
1542315317
-
Antiviral protein Ski8 is a direct partner of Spo11 in meiotic DNA break formation, independent of its cytoplasmic role in RNA metabolism
-
C. Arora, K. Kee, S. Maleki, and S. Keeney Antiviral protein Ski8 is a direct partner of Spo11 in meiotic DNA break formation, independent of its cytoplasmic role in RNA metabolism Mol. Cell 13 2004 549 559
-
(2004)
Mol. Cell
, vol.13
, pp. 549-559
-
-
Arora, C.1
Kee, K.2
Maleki, S.3
Keeney, S.4
-
5
-
-
0030987132
-
An atypical topoisomerase II from Archaea with implications for meiotic recombination
-
A. Bergerat, B. de Massy, D. Gadelle, P.C. Varoutas, A. Nicolas, and P. Forterre An atypical topoisomerase II from Archaea with implications for meiotic recombination Nature 386 1997 414 417
-
(1997)
Nature
, vol.386
, pp. 414-417
-
-
Bergerat, A.1
De Massy, B.2
Gadelle, D.3
Varoutas, P.C.4
Nicolas, A.5
Forterre, P.6
-
6
-
-
78650131655
-
Unique properties of the Mtr4p-poly(A) complex suggest a role in substrate targeting
-
J. Bernstein, J.D. Ballin, D.N. Patterson, G.M. Wilson, and E.A. Toth Unique properties of the Mtr4p-poly(A) complex suggest a role in substrate targeting Biochemistry 49 2010 10357 10370
-
(2010)
Biochemistry
, vol.49
, pp. 10357-10370
-
-
Bernstein, J.1
Ballin, J.D.2
Patterson, D.N.3
Wilson, G.M.4
Toth, E.A.5
-
7
-
-
70350336247
-
The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
F. Bonneau, J. Basquin, J. Ebert, E. Lorentzen, and E. Conti The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation Cell 139 2009 547 559
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
8
-
-
84862981060
-
Analyzing ATP utilization by DEAD-Box RNA helicases using kinetic and equilibrium methods
-
M.J. Bradley, and E.M. De La Cruz Analyzing ATP utilization by DEAD-Box RNA helicases using kinetic and equilibrium methods Methods Enzymol. 511 2012 29 63
-
(2012)
Methods Enzymol.
, vol.511
, pp. 29-63
-
-
Bradley, M.J.1
De La Cruz, E.M.2
-
9
-
-
0034118002
-
The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo
-
J.T. Brown, X. Bai, and A.W. Johnson The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo RNA 6 2000 449 457
-
(2000)
RNA
, vol.6
, pp. 449-457
-
-
Brown, J.T.1
Bai, X.2
Johnson, A.W.3
-
10
-
-
34447132375
-
Structural basis for DNA duplex separation by a superfamily-2 helicase
-
K. Büttner, S. Nehring, and K.P. Hopfner Structural basis for DNA duplex separation by a superfamily-2 helicase Nat. Struct. Mol. Biol. 14 2007 647 652
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 647-652
-
-
Büttner, K.1
Nehring, S.2
Hopfner, K.P.3
-
11
-
-
79952686670
-
Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
-
S. Chakrabarti, U. Jayachandran, F. Bonneau, F. Fiorini, C. Basquin, S. Domcke, H. Le Hir, and E. Conti Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2 Mol. Cell 41 2011 693 703
-
(2011)
Mol. Cell
, vol.41
, pp. 693-703
-
-
Chakrabarti, S.1
Jayachandran, U.2
Bonneau, F.3
Fiorini, F.4
Basquin, C.5
Domcke, S.6
Le Hir, H.7
Conti, E.8
-
12
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
V.B. Chen, W.B. Arendall 3rd, J.J. Headd, D.A. Keedy, R.M. Immormino, G.J. Kapral, L.W. Murray, J.S. Richardson, and D.C. Richardson MolProbity: all-atom structure validation for macromolecular crystallography Acta Crystallogr. D Biol. Crystallogr. 66 2010 12 21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
13
-
-
4644355036
-
Crystal structure of Ski8p, a WD-repeat protein with dual roles in mRNA metabolism and meiotic recombination
-
Z. Cheng, Y. Liu, C. Wang, R. Parker, and H. Song Crystal structure of Ski8p, a WD-repeat protein with dual roles in mRNA metabolism and meiotic recombination Protein Sci. 13 2004 2673 2684
-
(2004)
Protein Sci.
, vol.13
, pp. 2673-2684
-
-
Cheng, Z.1
Liu, Y.2
Wang, C.3
Parker, R.4
Song, H.5
-
15
-
-
0032473425
-
The structure of the tetratricopeptide repeats of protein phosphatase 5: Implications for TPR-mediated protein-protein interactions
-
A.K. Das, P.W. Cohen, and D. Barford The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions EMBO J. 17 1998 1192 1199
-
(1998)
EMBO J.
, vol.17
, pp. 1192-1199
-
-
Das, A.K.1
Cohen, P.W.2
Barford, D.3
-
16
-
-
33746414364
-
Considerations for the refinement of low-resolution crystal structures
-
B. DeLaBarre, and A.T. Brunger Considerations for the refinement of low-resolution crystal structures Acta Crystallogr. D Biol. Crystallogr. 62 2006 923 932
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 923-932
-
-
Delabarre, B.1
Brunger, A.T.2
-
17
-
-
0032481316
-
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae
-
J. de la Cruz, D. Kressler, D. Tollervey, and P. Linder Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae EMBO J. 17 1998 1128 1140
-
(1998)
EMBO J.
, vol.17
, pp. 1128-1140
-
-
De La Cruz, J.1
Kressler, D.2
Tollervey, D.3
Linder, P.4
-
18
-
-
33846068920
-
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
-
A. Dziembowski, E. Lorentzen, E. Conti, and B. Séraphin A single subunit, Dis3, is essentially responsible for yeast exosome core activity Nat. Struct. Mol. Biol. 14 2007 15 22
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 15-22
-
-
Dziembowski, A.1
Lorentzen, E.2
Conti, E.3
Séraphin, B.4
-
20
-
-
84055217962
-
The crystal structure of S cerevisiae Ski2, a DExH helicase associated with the cytoplasmic functions of the exosome
-
F. Halbach, M. Rode, and E. Conti The crystal structure of S. cerevisiae Ski2, a DExH helicase associated with the cytoplasmic functions of the exosome RNA 18 2012 124 134
-
(2012)
RNA
, vol.18
, pp. 124-134
-
-
Halbach, F.1
Rode, M.2
Conti, E.3
-
21
-
-
0025034814
-
Snap helix with knob and hole: Essential repeats in S. pombe nuclear protein nuc2+
-
T. Hirano, N. Kinoshita, K. Morikawa, and M. Yanagida Snap helix with knob and hole: essential repeats in S. pombe nuclear protein nuc2+ Cell 60 1990 319 328
-
(1990)
Cell
, vol.60
, pp. 319-328
-
-
Hirano, T.1
Kinoshita, N.2
Morikawa, K.3
Yanagida, M.4
-
22
-
-
60149090021
-
The many pathways of RNA degradation
-
J. Houseley, and D. Tollervey The many pathways of RNA degradation Cell 136 2009 763 776
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
24
-
-
77954952539
-
The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing
-
R.N. Jackson, A.A. Klauer, B.J. Hintze, H. Robinson, A. van Hoof, and S.J. Johnson The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing EMBO J. 29 2010 2205 2216
-
(2010)
EMBO J.
, vol.29
, pp. 2205-2216
-
-
Jackson, R.N.1
Klauer, A.A.2
Hintze, B.J.3
Robinson, H.4
Van Hoof, A.5
Johnson, S.J.6
-
25
-
-
0028922919
-
Synthetic lethality of sep1 (xrn1) ski2 and sep1 (xrn1) ski3 mutants of Saccharomyces cerevisiae is independent of killer virus and suggests a general role for these genes in translation control
-
A.W. Johnson, and R.D. Kolodner Synthetic lethality of sep1 (xrn1) ski2 and sep1 (xrn1) ski3 mutants of Saccharomyces cerevisiae is independent of killer virus and suggests a general role for these genes in translation control Mol. Cell. Biol. 15 1995 2719 2727
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 2719-2727
-
-
Johnson, A.W.1
Kolodner, R.D.2
-
26
-
-
33846611978
-
TPRpred: A tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences
-
M.R. Karpenahalli, A.N. Lupas, and J. Söding TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences BMC Bioinformatics 8 2007 2
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 2
-
-
Karpenahalli, M.R.1
Lupas, A.N.2
Söding, J.3
-
28
-
-
84871736707
-
Genetic interactions suggest multiple distinct roles of the arch and core helicase domains of Mtr4 in Rrp6 and exosome function
-
A.A. Klauer, and A. van Hoof Genetic interactions suggest multiple distinct roles of the arch and core helicase domains of Mtr4 in Rrp6 and exosome function Nucleic Acids Res. 41 2013 533 541
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 533-541
-
-
Klauer, A.A.1
Van Hoof, A.2
-
29
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
J. LaCava, J. Houseley, C. Saveanu, E. Petfalski, E. Thompson, A. Jacquier, and D. Tollervey RNA degradation by the exosome is promoted by a nuclear polyadenylation complex Cell 121 2005 713 724
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
Lacava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
30
-
-
0025252545
-
Disruption of the gene XRN1, coding for a 5′ - - 3′ exoribonuclease, restricts yeast cell growth
-
F.W. Larimer, and A. Stevens Disruption of the gene XRN1, coding for a 5′ - - 3′ exoribonuclease, restricts yeast cell growth Gene 95 1990 85 90
-
(1990)
Gene
, vol.95
, pp. 85-90
-
-
Larimer, F.W.1
Stevens, A.2
-
31
-
-
50849118813
-
Exosome-mediated quality control: Substrate recruitment and molecular activity
-
A. Lebreton, and B. Séraphin Exosome-mediated quality control: substrate recruitment and molecular activity Biochim. Biophys. Acta 1779 2008 558 565
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 558-565
-
-
Lebreton, A.1
Séraphin, B.2
-
32
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
Q. Liu, J.C. Greimann, and C.D. Lima Reconstitution, activities, and structure of the eukaryotic RNA exosome Cell 127 2006 1223 1237
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
33
-
-
33646523370
-
The exosome and the proteasome: Nano-compartments for degradation
-
E. Lorentzen, and E. Conti The exosome and the proteasome: nano-compartments for degradation Cell 125 2006 651 654
-
(2006)
Cell
, vol.125
, pp. 651-654
-
-
Lorentzen, E.1
Conti, E.2
-
34
-
-
0141865611
-
General methods for analysis of sequential "n-step" kinetic mechanisms: Application to single turnover kinetics of helicase-catalyzed DNA unwinding
-
A.L. Lucius, N.K. Maluf, C.J. Fischer, and T.M. Lohman General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding Biophys. J. 85 2003 2224 2239
-
(2003)
Biophys. J.
, vol.85
, pp. 2224-2239
-
-
Lucius, A.L.1
Maluf, N.K.2
Fischer, C.J.3
Lohman, T.M.4
-
36
-
-
2442701467
-
The structure of Ski8p, a protein regulating mRNA degradation: Implications for WD protein structure
-
A.Y. Madrona, and D.K. Wilson The structure of Ski8p, a protein regulating mRNA degradation: implications for WD protein structure Protein Sci. 13 2004 1557 1565
-
(2004)
Protein Sci.
, vol.13
, pp. 1557-1565
-
-
Madrona, A.Y.1
Wilson, D.K.2
-
37
-
-
84874742223
-
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
-
D.L. Makino, M. Baumgärtner, and E. Conti Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex Nature 495 2013 70 75
-
(2013)
Nature
, vol.495
, pp. 70-75
-
-
Makino, D.L.1
Baumgärtner, M.2
Conti, E.3
-
38
-
-
0037762554
-
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′ - >5′ degradation
-
P. Mitchell, and D. Tollervey An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′ - >5′ degradation Mol. Cell 11 2003 1405 1413
-
(2003)
Mol. Cell
, vol.11
, pp. 1405-1413
-
-
Mitchell, P.1
Tollervey, D.2
-
39
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ - >5′ exoribonucleases
-
P. Mitchell, E. Petfalski, A. Shevchenko, M. Mann, and D. Tollervey The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′ - >5′ exoribonucleases Cell 91 1997 457 466
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
40
-
-
0033229826
-
Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11
-
M.D. Nichols, K. DeAngelis, J.L. Keck, and J.M. Berger Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11 EMBO J. 18 1999 6177 6188
-
(1999)
EMBO J.
, vol.18
, pp. 6177-6188
-
-
Nichols, M.D.1
Deangelis, K.2
Keck, J.L.3
Berger, J.M.4
-
41
-
-
15444368560
-
Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
-
T.I. Orban, and E. Izaurralde Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome RNA 11 2005 459 469
-
(2005)
RNA
, vol.11
, pp. 459-469
-
-
Orban, T.I.1
Izaurralde, E.2
-
42
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
A.M. Pyle Translocation and unwinding mechanisms of RNA and DNA helicases Annu. Rev. Biophys. 37 2008 317 336
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
43
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
D. Schaeffer, B. Tsanova, A. Barbas, F.P. Reis, E.G. Dastidar, M. Sanchez-Rotunno, C.M. Arraiano, and A. van Hoof The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities Nat. Struct. Mol. Biol. 16 2009 56 62
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
Van Hoof, A.8
-
44
-
-
79955574923
-
-
Schrödinger Version 1.5.0.4 Schrödinger, LLC
-
Schrödinger The PyMOL Molecular Graphics System Version 1.5.0.4 2010 Schrödinger, LLC
-
(2010)
The PyMOL Molecular Graphics System
-
-
-
45
-
-
0025159176
-
A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis
-
R.S. Sikorski, M.S. Boguski, M. Goebl, and P. Hieter A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis Cell 60 1990 307 317
-
(1990)
Cell
, vol.60
, pp. 307-317
-
-
Sikorski, R.S.1
Boguski, M.S.2
Goebl, M.3
Hieter, P.4
-
47
-
-
37549048557
-
The yeast Ski complex is a hetero-tetramer
-
S.A. Synowsky, and A.J. Heck The yeast Ski complex is a hetero-tetramer Protein Sci. 17 2008 119 125
-
(2008)
Protein Sci.
, vol.17
, pp. 119-125
-
-
Synowsky, S.A.1
Heck, A.J.2
-
48
-
-
34447119616
-
The exosome and RNA quality control in the nucleus
-
S. Vanacova, and R. Stefl The exosome and RNA quality control in the nucleus EMBO Rep. 8 2007 651 657
-
(2007)
EMBO Rep.
, vol.8
, pp. 651-657
-
-
Vanacova, S.1
Stefl, R.2
-
49
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
S. Vanácová, J. Wolf, G. Martin, D. Blank, S. Dettwiler, A. Friedlein, H. Langen, G. Keith, and W. Keller A new yeast poly(A) polymerase complex involved in RNA quality control PLoS Biol. 3 2005 e189
-
(2005)
PLoS Biol.
, vol.3
, pp. 189
-
-
Vanácová, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
50
-
-
0032727868
-
The exosome: A proteasome for RNA?
-
A. van Hoof, and R. Parker The exosome: a proteasome for RNA? Cell 99 1999 347 350
-
(1999)
Cell
, vol.99
, pp. 347-350
-
-
Van Hoof, A.1
Parker, R.2
-
51
-
-
0033981301
-
Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
-
A. van Hoof, P. Lennertz, and R. Parker Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs Mol. Cell. Biol. 20 2000 441 452
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 441-452
-
-
Van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
52
-
-
0033777266
-
Function of the ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA
-
A. van Hoof, R.R. Staples, R.E. Baker, and R. Parker Function of the ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA Mol. Cell. Biol. 20 2000 8230 8243
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 8230-8243
-
-
Van Hoof, A.1
Staples, R.R.2
Baker, R.E.3
Parker, R.4
-
53
-
-
0037155584
-
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
-
A. van Hoof, P.A. Frischmeyer, H.C. Dietz, and R. Parker Exosome-mediated recognition and degradation of mRNAs lacking a termination codon Science 295 2002 2262 2264
-
(2002)
Science
, vol.295
, pp. 2262-2264
-
-
Van Hoof, A.1
Frischmeyer, P.A.2
Dietz, H.C.3
Parker, R.4
-
54
-
-
23644443992
-
Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p
-
L. Wang, M.S. Lewis, and A.W. Johnson Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p RNA 11 2005 1291 1302
-
(2005)
RNA
, vol.11
, pp. 1291-1302
-
-
Wang, L.1
Lewis, M.S.2
Johnson, A.W.3
-
55
-
-
84867395423
-
Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel
-
E.V. Wasmuth, and C.D. Lima Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel Mol. Cell 48 2012 133 144
-
(2012)
Mol. Cell
, vol.48
, pp. 133-144
-
-
Wasmuth, E.V.1
Lima, C.D.2
-
56
-
-
77955453339
-
Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance
-
J.R. Weir, F. Bonneau, J. Hentschel, and E. Conti Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance Proc. Natl. Acad. Sci. USA 107 2010 12139 12144
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 12139-12144
-
-
Weir, J.R.1
Bonneau, F.2
Hentschel, J.3
Conti, E.4
-
57
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
F. Wyers, M. Rougemaille, G. Badis, J.C. Rousselle, M.E. Dufour, J. Boulay, B. Régnault, F. Devaux, A. Namane, and B. Séraphin Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase Cell 121 2005 725 737
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.C.4
Dufour, M.E.5
Boulay, J.6
Régnault, B.7
Devaux, F.8
Namane, A.9
Séraphin, B.10
-
58
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
P.D. Adams, P.V. Afonine, G. Bunkóczi, V.B. Chen, I.W. Davis, N. Echols, J.J. Headd, L.W. Hung, G.J. Kapral, and R.W. Grosse-Kunstleve PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
59
-
-
84882785474
-
"quick and dirty" plasmid transformation of yeast colonies
-
pdb.prot4146
-
D.C. Amberg, D.J. Burke, and J.N. Strathern "Quick and dirty" plasmid transformation of yeast colonies CSH Protoc. 2006 2006 pdb.prot4146
-
(2006)
CSH Protoc.
, vol.2006
-
-
Amberg, D.C.1
Burke, D.J.2
Strathern, J.N.3
-
63
-
-
33751247668
-
Protein complex expression by using multigene baculoviral vectors
-
D.J. Fitzgerald, P. Berger, C. Schaffitzel, K. Yamada, T.J. Richmond, and I. Berger Protein complex expression by using multigene baculoviral vectors Nat. Methods 3 2006 1021 1032
-
(2006)
Nat. Methods
, vol.3
, pp. 1021-1032
-
-
Fitzgerald, D.J.1
Berger, P.2
Schaffitzel, C.3
Yamada, K.4
Richmond, T.J.5
Berger, I.6
-
64
-
-
34347206860
-
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
R.D. Gietz, and R.H. Schiestl High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method Nat. Protoc. 2 2007 31 34
-
(2007)
Nat. Protoc.
, vol.2
, pp. 31-34
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
65
-
-
0037088811
-
A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast
-
U. Gueldener, J. Heinisch, G.J. Koehler, D. Voss, and J.H. Hegemann A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast Nucleic Acids Res. 30 2002 e23
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 23
-
-
Gueldener, U.1
Heinisch, J.2
Koehler, G.J.3
Voss, D.4
Hegemann, J.H.5
-
66
-
-
4444271170
-
A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
-
C. Janke, M.M. Magiera, N. Rathfelder, C. Taxis, S. Reber, H. Maekawa, A. Moreno-Borchart, G. Doenges, E. Schwob, E. Schiebel, and M. Knop A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes Yeast 21 2004 947 962
-
(2004)
Yeast
, vol.21
, pp. 947-962
-
-
Janke, C.1
Magiera, M.M.2
Rathfelder, N.3
Taxis, C.4
Reber, S.5
Maekawa, H.6
Moreno-Borchart, A.7
Doenges, G.8
Schwob, E.9
Schiebel, E.10
Knop, M.11
-
68
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
W. Kabsch, and C. Sander Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
69
-
-
84861425552
-
Linking crystallographic model and data quality
-
P.A. Karplus, and K. Diederichs Linking crystallographic model and data quality Science 336 2012 1030 1033
-
(2012)
Science
, vol.336
, pp. 1030-1033
-
-
Karplus, P.A.1
Diederichs, K.2
-
70
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
L.A. Kelley, and M.J. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4 2009 363 371
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
71
-
-
34447508216
-
Phaser crystallographic software
-
A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read Phaser crystallographic software J. Appl. Cryst. 40 2007 658 674
-
(2007)
J. Appl. Cryst.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
72
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
J. Painter, and E.A. Merritt Optimal description of a protein structure in terms of multiple groups undergoing TLS motion Acta Crystallogr. D Biol. Crystallogr. 62 2006 439 450
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
73
-
-
33749536748
-
Co-expression of protein complexes in prokaryotic and eukaryotic hosts: Experimental procedures, database tracking and case studies
-
C. Romier, M. Ben Jelloul, S. Albeck, G. Buchwald, D. Busso, P.H. Celie, E. Christodoulou, V. De Marco, S. van Gerwen, and P. Knipscheer Co-expression of protein complexes in prokaryotic and eukaryotic hosts: experimental procedures, database tracking and case studies Acta Crystallogr. D Biol. Crystallogr. 62 2006 1232 1242
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1232-1242
-
-
Romier, C.1
Ben Jelloul, M.2
Albeck, S.3
Buchwald, G.4
Busso, D.5
Celie, P.H.6
Christodoulou, E.7
De Marco, V.8
Van Gerwen, S.9
Knipscheer, P.10
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