-
2
-
-
36149000117
-
Characterization, polymorphism, and evolution of MHC class IIB genes in birds of prey
-
17925996 10.1007/s00239-007-9033-9 1:CAS:528:DC%2BD2sXhtlSlsLfI
-
Alcaide M, Edwards SV, Negro JJ (2007) Characterization, polymorphism, and evolution of MHC class IIB genes in birds of prey. J Mol Evol 65:541-554
-
(2007)
J Mol Evol
, vol.65
, pp. 541-554
-
-
Alcaide, M.1
Edwards, S.V.2
Negro, J.J.3
-
3
-
-
77957332461
-
Concurrent avian malaria and avipox virus infection in translocated South Island saddlebacks (Philesturnus carunculatus carunculatus)
-
20676161 10.1080/00480169.2010.68868 1:STN:280:DC%2BC3cjhslGltw%3D%3D
-
Alley M, Hale K, Cash W, Ha H, Howe L (2010) Concurrent avian malaria and avipox virus infection in translocated South Island saddlebacks (Philesturnus carunculatus carunculatus). N Z Vet J 58:218-223
-
(2010)
N Z Vet J
, vol.58
, pp. 218-223
-
-
Alley, M.1
Hale, K.2
Cash, W.3
Ha, H.4
Howe, L.5
-
4
-
-
0141906788
-
Rapid evolutionary dynamics and disease threats to biodiversity
-
10.1016/j.tree.2003.08.013
-
Altizer S, Harvell D, Friedle E (2003) Rapid evolutionary dynamics and disease threats to biodiversity. Trends Ecol Evol 18:589-596
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 589-596
-
-
Altizer, S.1
Harvell, D.2
Friedle, E.3
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
9254694 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
6
-
-
77954057688
-
Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes
-
20456568 10.1111/j.1420-9101.2010.01999.x 1:CAS:528:DC%2BC3cXot1Kitrs%3D
-
Anmarkrud J, Johnsen A, Bachmann L, Lifjeld J (2010) Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes. J Evol Biol 23:1206-1217
-
(2010)
J Evol Biol
, vol.23
, pp. 1206-1217
-
-
Anmarkrud, J.1
Johnsen, A.2
Bachmann, L.3
Lifjeld, J.4
-
7
-
-
65249087333
-
New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system
-
10.1111/j.1755-0998.2009.02622.x 1:CAS:528:DC%2BD1MXls1Ggtbw%3D
-
Babik W, Taberlet P, Ejsmond M, Radwan J (2009) New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system. Mol Ecol Res 9:713-719
-
(2009)
Mol Ecol Res
, vol.9
, pp. 713-719
-
-
Babik, W.1
Taberlet, P.2
Ejsmond, M.3
Radwan, J.4
-
8
-
-
3342978151
-
Phylogeny and diversification of the largest avian radiation
-
15263073 10.1073/pnas.0401892101 1:CAS:528:DC%2BD2cXmsVCmt7k%3D
-
Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J (2004) Phylogeny and diversification of the largest avian radiation. Proc Natl Acad Sci U S A 101:11040-11045
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11040-11045
-
-
Barker, F.K.1
Cibois, A.2
Schikler, P.3
Feinstein, J.4
Cracraft, J.5
-
9
-
-
0037884727
-
MHC studies in nonmodel vertebrates: What have we learned about natural selection in 15 years?
-
14635837 10.1046/j.1420-9101.2003.00531.x 1:CAS:528:DC%2BD3sXkt1Gqtbo%3D
-
Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J Evol Biol 16:363-377
-
(2003)
J Evol Biol
, vol.16
, pp. 363-377
-
-
Bernatchez, L.1
Landry, C.2
-
10
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
17299583 10.1371/journal.pone.0000197
-
Binladen J, Gilbert M, Bollback J, Panitz F, Bendixen C, Nielsen R, Willerslev E (2007) The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One 2:e197
-
(2007)
PLoS One
, vol.2
, pp. 197
-
-
Binladen, J.1
Gilbert, M.2
Bollback, J.3
Panitz, F.4
Bendixen, C.5
Nielsen, R.6
Willerslev, E.7
-
11
-
-
77954489376
-
Manipulation of FASTQ data with Galaxy
-
20562416 10.1093/bioinformatics/btq281 1:CAS:528:DC%2BC3cXotleqsL0%3D
-
Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A (2010) Manipulation of FASTQ data with Galaxy. Bioinformatics 26:1783-1785
-
(2010)
Bioinformatics
, vol.26
, pp. 1783-1785
-
-
Blankenberg, D.1
Gordon, A.2
Von Kuster, G.3
Coraor, N.4
Taylor, J.5
Nekrutenko, A.6
-
12
-
-
77953858387
-
Extensive MHC class II B gene duplication in a passerine, the common yellowthroat (Geothlypis trichas)
-
20200139 10.1093/jhered/esq018 1:CAS:528:DC%2BC3cXnvVOls7c%3D
-
Bollmer JL, Dunn PO, Whittingham LA, Wimpee C (2010) Extensive MHC class II B gene duplication in a passerine, the common yellowthroat (Geothlypis trichas). J Hered 101:448-460
-
(2010)
J Hered
, vol.101
, pp. 448-460
-
-
Bollmer, J.L.1
Dunn, P.O.2
Whittingham, L.A.3
Wimpee, C.4
-
13
-
-
84872608867
-
Variation in MHC genotypes in two populations of house sparrow (Passer domesticus) with different population histories
-
22393491 10.1002/ece3.13
-
Borg ÅA, Pedersen SA, Jensen H, Westerdahl H (2011) Variation in MHC genotypes in two populations of house sparrow (Passer domesticus) with different population histories. Ecol Evol 1:145-159
-
(2011)
Ecol Evol
, vol.1
, pp. 145-159
-
-
Borg, Å.1
Pedersen, S.A.2
Jensen, H.3
Westerdahl, H.4
-
14
-
-
0027217789
-
3-Dimensional structure of the human class-II histocompatibility antigen HLA-DR1
-
8316295 10.1038/364033a0 1:CAS:528:DyaK3sXkslSjsrc%3D
-
Brown J, Jardetzky T, Gorga J, Stern L, Urban R, Strominger J, Wiley D (1993) 3-Dimensional structure of the human class-II histocompatibility antigen HLA-DR1. Nature 364:33-39
-
(1993)
Nature
, vol.364
, pp. 33-39
-
-
Brown, J.1
Jardetzky, T.2
Gorga, J.3
Stern, L.4
Urban, R.5
Strominger, J.6
Wiley, D.7
-
15
-
-
44649104548
-
Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution
-
18359775 10.1093/molbev/msn065 1:CAS:528:DC%2BD1cXntlWltLw%3D
-
Burri R, Hirzel HN, Salamin N, Roulin A, Fumagalli L (2008) Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Mol Biol Evol 25:1180-1191
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1180-1191
-
-
Burri, R.1
Hirzel, H.N.2
Salamin, N.3
Roulin, A.4
Fumagalli, L.5
-
16
-
-
77957224454
-
Adaptive divergence of ancient gene duplicates in the avian MHC class II β
-
20463048 10.1093/molbev/msq120 1:CAS:528:DC%2BC3cXht1WhtL7E
-
Burri R, Salamin N, Studer RA, Roulin A, Fumagalli L (2010) Adaptive divergence of ancient gene duplicates in the avian MHC class II β. Mol Biol Evol 27:2360-2374
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2360-2374
-
-
Burri, R.1
Salamin, N.2
Studer, R.A.3
Roulin, A.4
Fumagalli, L.5
-
17
-
-
77957033334
-
Towards the simplification of MHC typing protocols: Targeting classical MHC class II genes in a passerine, the pied flycatcher Ficedula hypoleuca
-
20815923 10.1186/1756-0500-3-236
-
Canal D, Alcaide M, Anmarkrud J, Potti J (2010) Towards the simplification of MHC typing protocols: targeting classical MHC class II genes in a passerine, the pied flycatcher Ficedula hypoleuca. BMC Res Notes 3:236
-
(2010)
BMC Res Notes
, vol.3
, pp. 236
-
-
Canal, D.1
Alcaide, M.2
Anmarkrud, J.3
Potti, J.4
-
18
-
-
83955165908
-
Chelex without boiling, a rapid and easy technique to obtain stable amplifiable DNA from small amounts of ethanol-stored spiders
-
21943065 10.1111/j.1755-0998.2011.03073.x 1:CAS:528:DC%2BC38XhvVChs78%3D
-
Casquet J, Thebaud C, Gillespie RG (2012) Chelex without boiling, a rapid and easy technique to obtain stable amplifiable DNA from small amounts of ethanol-stored spiders. Mol Ecol Resour 12:136-141
-
(2012)
Mol Ecol Resour
, vol.12
, pp. 136-141
-
-
Casquet, J.1
Thebaud, C.2
Gillespie, R.G.3
-
19
-
-
0034682945
-
Ancient DNA: Do it right or not at all
-
10970224 10.1126/science.289.5482.1139b 1:CAS:528:DC%2BD3cXmt1Sqtbo%3D
-
Cooper A, Poinar HN (2000) Ancient DNA: do it right or not at all. Science 289:1139-1139
-
(2000)
Science
, vol.289
, pp. 1139-1139
-
-
Cooper, A.1
Poinar, H.N.2
-
20
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
20671151 10.1093/bioinformatics/btq429 1:CAS:528:DC%2BC3cXht1Whtb7F
-
Delport W, Poon AFY, Frost SDW, Pond SLK (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26:2455-2457
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Pond, S.L.K.4
-
21
-
-
84866291819
-
-
Drummond A, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2012) Geneious v5.6.5 created by Biomatters. Available from http://www.geneious.com
-
(2012)
Geneious v5.6.5 Created by Biomatters
-
-
Drummond, A.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Duran, C.6
Field, M.7
Heled, J.8
Kearse, M.9
Markowitz, S.10
Moir, R.11
Stones-Havas, S.12
Sturrock, S.13
Thierer, T.14
Wilson, A.15
-
22
-
-
0029583058
-
Dynamics of Mhc evolution in birds and crocodilians: Amplification of class II genes with degenerate primers
-
8564010 10.1111/j.1365-294X.1995.tb00272.x 1:CAS:528:DyaK28XhtFynu78%3D
-
Edwards SV, Grahn M, Potts WK (1995a) Dynamics of Mhc evolution in birds and crocodilians: amplification of class II genes with degenerate primers. Mol Ecol 4:719-729
-
(1995)
Mol Ecol
, vol.4
, pp. 719-729
-
-
Edwards, S.V.1
Grahn, M.2
Potts, W.K.3
-
23
-
-
0029557243
-
Contrasting histories of avian and mammalian Mhc genes revealed by class II B sequences from songbirds
-
8618869 10.1073/pnas.92.26.12200 1:CAS:528:DyaK28Xhtl2htQ%3D%3D
-
Edwards SV, Wakeland E, Potts W (1995b) Contrasting histories of avian and mammalian Mhc genes revealed by class II B sequences from songbirds. Proc Natl Acad Sci USA 92:12200-12204
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 12200-12204
-
-
Edwards, S.V.1
Wakeland, E.2
Potts, W.3
-
24
-
-
0031938882
-
Genomics and polymorphism of Agph-DAB1, an Mhc class II B gene in red-winged blackbirds (Agelaius phoeniceus)
-
9501491 10.1093/oxfordjournals.molbev.a025921 1:CAS:528: DyaK1cXhtlyit78%3D
-
Edwards SV, Gasper J, March M (1998) Genomics and polymorphism of Agph-DAB1, an Mhc class II B gene in red-winged blackbirds (Agelaius phoeniceus). Mol Biol Evol 15:236-250
-
(1998)
Mol Biol Evol
, vol.15
, pp. 236-250
-
-
Edwards, S.V.1
Gasper, J.2
March, M.3
-
25
-
-
0032947421
-
Toward an evolutionary genomics of the avian Mhc
-
10319255 10.1111/j.1600-065X.1999.tb01386.x 1:CAS:528:DyaK1MXivFSltb8%3D
-
Edwards SV, Hess CM, Gasper J, Garrigan D (1999) Toward an evolutionary genomics of the avian Mhc. Immunol Rev 167:119-132
-
(1999)
Immunol Rev
, vol.167
, pp. 119-132
-
-
Edwards, S.V.1
Hess, C.M.2
Gasper, J.3
Garrigan, D.4
-
26
-
-
77949772802
-
MHC class II diversity and balancing selection in greater prairie-chickens
-
19851875 10.1007/s10709-009-9417-4 1:CAS:528:DC%2BC3cXjslOnsg%3D%3D
-
Eimes J, Bollmer J, Dunn P, Whittingham L, Wimpee C (2010) MHC class II diversity and balancing selection in greater prairie-chickens. Genetica 138:265-271
-
(2010)
Genetica
, vol.138
, pp. 265-271
-
-
Eimes, J.1
Bollmer, J.2
Dunn, P.3
Whittingham, L.4
Wimpee, C.5
-
27
-
-
0031978181
-
Base-calling of automated sequencer traces using Phred. II. Error probabilities
-
9521922 10.1101/gr.8.3.175 1:CAS:528:DyaK1cXitlWlu7g%3D
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res 8:186-194
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
28
-
-
0031955518
-
Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
-
9521921 10.1101/gr.8.3.175 1:CAS:528:DyaK1cXitlWlu78%3D
-
Ewing B, Hillier LD, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8:175-185
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.D.2
Wendl, M.C.3
Green, P.4
-
29
-
-
0025855156
-
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
-
1709722 10.1038/351290a0 1:CAS:528:DyaK3MXkt1Ogs78%3D
-
Falk K, Rötzschke O, Stevanovié S, Jung G, Rammensee HG (1991) Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules. Nature 351:290-296
-
(1991)
Nature
, vol.351
, pp. 290-296
-
-
Falk, K.1
Rötzschke, O.2
Stevanovié, S.3
Jung, G.4
Rammensee, H.G.5
-
30
-
-
77951973196
-
A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
-
20459828 10.1186/1471-2164-11-296
-
Galan M, Guivier E, Caraux G, Charbonnel N, Cosson J-F (2010) A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11:296
-
(2010)
BMC Genomics
, vol.11
, pp. 296
-
-
Galan, M.1
Guivier, E.2
Caraux, G.3
Charbonnel, N.4
Cosson, J.-F.5
-
31
-
-
0042785584
-
Perspective: Detecting adaptive molecular polymorphism: Lessons from the MHC
-
14503614 1:CAS:528:DC%2BD3sXns1eqsbw%3D
-
Garrigan D, Hedrick PW (2003) Perspective: detecting adaptive molecular polymorphism: lessons from the MHC. Evolution 57:1707-1722
-
(2003)
Evolution
, vol.57
, pp. 1707-1722
-
-
Garrigan, D.1
Hedrick, P.W.2
-
32
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
16169926 10.1101/gr.4086505 1:CAS:528:DC%2BD2MXhtFajurnE
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res 15:1451-1455
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
-
33
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
20738864 10.1186/gb-2010-11-8-r86
-
Goecks J, Nekrutenko A, Taylor J (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11:R86
-
(2010)
Genome Biol
, vol.11
, pp. 86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
35
-
-
74049092307
-
Rapid recovery of an island population of the threatened South Island Saddleback Philesturnus c. carunculatus after a pathogen outbreak
-
10.1017/S0959270909008193
-
Hale K, Briskie J (2009) Rapid recovery of an island population of the threatened South Island Saddleback Philesturnus c. carunculatus after a pathogen outbreak. Bird Conserv Int 19:239-253
-
(2009)
Bird Conserv Int
, vol.19
, pp. 239-253
-
-
Hale, K.1
Briskie, J.2
-
37
-
-
0028028910
-
Evolutionary genetics of the major histocompatibility complex
-
10.1086/285643
-
Hedrick PW (1994) Evolutionary genetics of the major histocompatibility complex. Am Nat 143:945-964
-
(1994)
Am Nat
, vol.143
, pp. 945-964
-
-
Hedrick, P.W.1
-
38
-
-
0036241218
-
The evolution of the major histocompatibility complex in birds
-
10.1641/0006-3568(2002)052[0423:TEOTMH]2.0.CO;2
-
Hess CM, Edwards SV (2002) The evolution of the major histocompatibility complex in birds. Bioscience 52:423-431
-
(2002)
Bioscience
, vol.52
, pp. 423-431
-
-
Hess, C.M.1
Edwards, S.V.2
-
39
-
-
0038265493
-
The distribution and current status of New Zealand saddleback Philesturnus carunculatus
-
10.1017/S0959270903003083
-
Hooson S, Jamieson IG (2003) The distribution and current status of New Zealand saddleback Philesturnus carunculatus. Bird Conserv Int 13:79-95
-
(2003)
Bird Conserv Int
, vol.13
, pp. 79-95
-
-
Hooson, S.1
Jamieson, I.G.2
-
40
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
11524383 10.1093/bioinformatics/17.8.754 1:STN:280:DC%2BD3MvotV2isw%3D%3D
-
Huelsenbeck J, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.1
Ronquist, F.2
-
41
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class i loci reveals overdominant selection
-
3412472 10.1038/335167a0 1:CAS:528:DyaL1cXlvVCktrY%3D
-
Hughes A, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.1
Nei, M.2
-
42
-
-
0040771786
-
Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection
-
2492668 10.1073/pnas.86.3.958 1:CAS:528:DyaL1MXhsV2jsbs%3D
-
Hughes A, Nei M (1989) Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci USA 86:958-962
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 958-962
-
-
Hughes, A.1
Nei, M.2
-
43
-
-
0032426345
-
Natural selection at the major histocompatibility complex loci of vertebrates
-
9928486 10.1146/annurev.genet.32.1.415 1:CAS:528:DyaK1MXjvFWltQ%3D%3D
-
Hughes A, Yeager M (1998) Natural selection at the major histocompatibility complex loci of vertebrates. Annu Rev Genet 32:415-435
-
(1998)
Annu Rev Genet
, vol.32
, pp. 415-435
-
-
Hughes, A.1
Yeager, M.2
-
44
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
3916708 1:CAS:528:DyaL2MXhvFyksbk%3D
-
Ikemura T (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2:13-34
-
(1985)
Mol Biol Evol
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
45
-
-
0032052803
-
Stimulation and suppression of PCR-mediated recombination
-
9512558 10.1093/nar/26.7.1819 1:CAS:528:DyaK1cXis1Oju7o%3D
-
Judo MSB, Wedel AB, Wilson C (1998) Stimulation and suppression of PCR-mediated recombination. Nucleic Acids Res 26:1819-1825
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1819-1825
-
-
Judo, M.S.B.1
Wedel, A.B.2
Wilson, C.3
-
46
-
-
63849093692
-
Lifetime reproductive success is maximized with optimal major histocompatibility complex diversity
-
Kalbe M, Eizaguirre C, Dankert I, Reusch TBH, Sommerfeld RD, Wegner KM, Milinski M (2009) Lifetime reproductive success is maximized with optimal major histocompatibility complex diversity. Proc Natl Acad Sci USA 276:925
-
(2009)
Proc Natl Acad Sci USA
, vol.276
, pp. 925
-
-
Kalbe, M.1
Eizaguirre, C.2
Dankert, I.3
Reusch, T.B.H.4
Sommerfeld, R.D.5
Wegner, K.M.6
Milinski, M.7
-
47
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
16233530 1:CAS:528:DC%2BD2cXhsFersg%3D%3D
-
Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96:317-323
-
(2003)
J Biosci Bioeng
, vol.96
, pp. 317-323
-
-
Kanagawa, T.1
-
48
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
15703242 10.1093/molbev/msi105
-
Kosakovsky Pond SL, Frost SDW (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22:1208-1222
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
-
50
-
-
33845361366
-
GARD: A genetic algorithm for recombination detection
-
17110367 10.1093/bioinformatics/btl474
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SDW (2006) GARD: a genetic algorithm for recombination detection. Bioinformatics 22:3096-3098
-
(2006)
Bioinformatics
, vol.22
, pp. 3096-3098
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
51
-
-
17844382169
-
Serial population bottlenecks and genetic variation: Translocated populations of the New Zealand saddleback (Philesturnus carunculatus rufusater)
-
10.1007/s10592-004-7857-z
-
Lambert D, King T, Shepherd L, Livingston A, Anderson S, Craig J (2005) Serial population bottlenecks and genetic variation: translocated populations of the New Zealand saddleback (Philesturnus carunculatus rufusater). Conserv Genet 6:1-14
-
(2005)
Conserv Genet
, vol.6
, pp. 1-14
-
-
Lambert, D.1
King, T.2
Shepherd, L.3
Livingston, A.4
Anderson, S.5
Craig, J.6
-
52
-
-
0024358059
-
Methyl-directed repair of frameshift heteroduplexes in cell extracts from Escherichia coli
-
2687237 1:CAS:528:DyaK3cXjtlWlsQ%3D%3D
-
Learn B, Graftstrom R (1989) Methyl-directed repair of frameshift heteroduplexes in cell extracts from Escherichia coli. J Bacteriol 171:6473-6481
-
(1989)
J Bacteriol
, vol.171
, pp. 6473-6481
-
-
Learn, B.1
Graftstrom, R.2
-
53
-
-
55149119144
-
Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci - Implications for evolutionary analysis
-
18848974 10.1016/j.gene.2008.09.013 1:CAS:528:DC%2BD1cXhtlCktrbF
-
Lenz TL, Becker S (2008) Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci - implications for evolutionary analysis. Gene 427:117-123
-
(2008)
Gene
, vol.427
, pp. 117-123
-
-
Lenz, T.L.1
Becker, S.2
-
54
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
19346325 10.1093/bioinformatics/btp187 1:CAS:528:DC%2BD1MXmtFeqtr8%3D
-
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
55
-
-
0026728457
-
Emerging principles for the recognition of peptide antigens by MHC class i molecules
-
1323878 10.1126/science.1323878 1:CAS:528:DyaK38XlsVyqsrg%3D
-
Matsumura M, Fremont DH, Peterson PA, Wilson IA (1992) Emerging principles for the recognition of peptide antigens by MHC class I molecules. Science 257:927-934
-
(1992)
Science
, vol.257
, pp. 927-934
-
-
Matsumura, M.1
Fremont, D.H.2
Peterson, P.A.3
Wilson, I.A.4
-
56
-
-
78651447245
-
SESAME (SEquence Sorter & AMplicon Explorer): Genotyping based on high-throughput multiplex amplicon sequencing
-
21084284 10.1093/bioinformatics/btq641
-
Meglécz E, Piry S, Desmarais E, Galan M, Gilles A, Guivier E, Pech N, Martin JF (2011) SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing. Bioinformatics 27:277-278
-
(2011)
Bioinformatics
, vol.27
, pp. 277-278
-
-
Meglécz, E.1
Piry, S.2
Desmarais, E.3
Galan, M.4
Gilles, A.5
Guivier, E.6
Pech, N.7
Martin, J.F.8
-
57
-
-
39449089394
-
Parallel tagged sequencing on the 454 platform
-
18274529 10.1038/nprot.2007.520 1:CAS:528:DC%2BD1cXhvVyls74%3D
-
Meyer M, Stenzel U, Hofreiter M (2008) Parallel tagged sequencing on the 454 platform. Nat Protoc 3:267-278
-
(2008)
Nat Protoc
, vol.3
, pp. 267-278
-
-
Meyer, M.1
Stenzel, U.2
Hofreiter, M.3
-
58
-
-
3142731513
-
Gene duplication and gene conversion in class II MHC genes of New Zealand robins (Petroicidae)
-
15138734 1:CAS:528:DC%2BD2cXmsl2rsbY%3D
-
Miller HC, Lambert DM (2004a) Gene duplication and gene conversion in class II MHC genes of New Zealand robins (Petroicidae). Immunogenetics 56:178-191
-
(2004)
Immunogenetics
, vol.56
, pp. 178-191
-
-
Miller, H.C.1
Lambert, D.M.2
-
59
-
-
9644255666
-
Genetic drift outweighs balancing selection in shaping post-bottleneck major histocompatibility complex variation in New Zealand robins (Petroicidae)
-
15548285 10.1111/j.1365-294X.2004.02368.x 1:CAS:528: DC%2BD2MXhtVGntA%3D%3D
-
Miller HC, Lambert DM (2004b) Genetic drift outweighs balancing selection in shaping post-bottleneck major histocompatibility complex variation in New Zealand robins (Petroicidae). Mol Ecol 13:3709-3721
-
(2004)
Mol Ecol
, vol.13
, pp. 3709-3721
-
-
Miller, H.C.1
Lambert, D.M.2
-
60
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
3444411 1:CAS:528:DyaL28Xmt1aisbs%3D
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
61
-
-
33644998297
-
The evolutionary ecology of the major histocompatibility complex
-
16094301 1:CAS:528:DC%2BD28XjsFOrsLY%3D
-
Piertney SB, Oliver MK (2006) The evolutionary ecology of the major histocompatibility complex. Heredity 96:7-21
-
(2006)
Heredity
, vol.96
, pp. 7-21
-
-
Piertney, S.B.1
Oliver, M.K.2
-
62
-
-
84856736609
-
Evaluation of two approaches to genotyping major histocompatibility complex class i in a passerine - CE-SSCP and 454 pyrosequencing
-
22018268 10.1111/j.1755-0998.2011.03082.x
-
Promerová M, Babik W, Bryja J, Albrecht T, Stuglik M, Radwan J (2011) Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine - CE-SSCP and 454 pyrosequencing. Mol Ecol Resour 12:285-292
-
(2011)
Mol Ecol Resour
, vol.12
, pp. 285-292
-
-
Promerová, M.1
Babik, W.2
Bryja, J.3
Albrecht, T.4
Stuglik, M.5
Radwan, J.6
-
63
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
21776081 10.1038/nature10242 1:CAS:528:DC%2BC3MXpt1aqtrs%3D
-
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, Feierstein E, Schorn M, Alanjary M, Dimalanta E, Dressman D, Kasinskas R, Sokolsky T, Fidanza JA, Namsaraev E, McKernan KJ, Williams A, Roth GT, Bustillo J (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475:348-352
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
Johnson, K.8
Milgrew, M.J.9
Edwards, M.10
Hoon, J.11
Simons, J.F.12
Marran, D.13
Myers, J.W.14
Davidson, J.F.15
Branting, A.16
Nobile, J.R.17
Puc, B.P.18
Light, D.19
Clark, T.A.20
Huber, M.21
Branciforte, J.T.22
Stoner, I.B.23
Cawley, S.E.24
Lyons, M.25
Fu, Y.26
Homer, N.27
Sedova, M.28
Miao, X.29
Reed, B.30
Sabina, J.31
Feierstein, E.32
Schorn, M.33
Alanjary, M.34
Dimalanta, E.35
Dressman, D.36
Kasinskas, R.37
Sokolsky, T.38
Fidanza, J.A.39
Namsaraev, E.40
McKernan, K.J.41
Williams, A.42
Roth, G.T.43
Bustillo, J.44
more..
-
64
-
-
84860901198
-
Characterization and 454 pyrosequencing of major histocompatibility complex class i genes in the great tit reveal complexity in a passerine system
-
22587557 10.1186/1471-2148-12-68 1:CAS:528:DC%2BC3sXmvFKgsg%3D%3D
-
Sepil I, Moghadam HK, Huchard E, Sheldon BC (2012) Characterization and 454 pyrosequencing of major histocompatibility complex class I genes in the great tit reveal complexity in a passerine system. BMC Evol Biol 12:68
-
(2012)
BMC Evol Biol
, vol.12
, pp. 68
-
-
Sepil, I.1
Moghadam, H.K.2
Huchard, E.3
Sheldon, B.C.4
-
65
-
-
0001881618
-
Preservation of avian blood and tissue samples for DNA analyses
-
10.1139/z91-013 1:CAS:528:DyaK3MXlslylur4%3D
-
Seutin G, White BN, Boag PT (1991) Preservation of avian blood and tissue samples for DNA analyses. Can J Zool 69:82-90
-
(1991)
Can J Zool
, vol.69
, pp. 82-90
-
-
Seutin, G.1
White, B.N.2
Boag, P.T.3
-
66
-
-
0023274170
-
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
-
3328816 1:CAS:528:DyaL2sXktlCju7o%3D
-
Sharp PM, Li WH (1987) The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol 4:222-230
-
(1987)
Mol Biol Evol
, vol.4
, pp. 222-230
-
-
Sharp, P.M.1
Li, W.H.2
-
67
-
-
27744606052
-
The importance of immune gene variability (MHC) in evolutionary ecology and conservation
-
10.1186/1742-9994-2-1
-
Sommer S (2005) The importance of immune gene variability (MHC) in evolutionary ecology and conservation. Front Zool 2:1-18
-
(2005)
Front Zool
, vol.2
, pp. 1-18
-
-
Sommer, S.1
-
68
-
-
77950816077
-
How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings
-
10.1098/rspb.2009.2084 1:CAS:528:DC%2BC3cXkslShtro%3D
-
Spurgin L, Richardson D (2010) How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings. Proc R Soc B (Biol Sci) 277:979-988
-
(2010)
Proc R Soc B (Biol Sci)
, vol.277
, pp. 979-988
-
-
Spurgin, L.1
Richardson, D.2
-
69
-
-
80054823536
-
Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes
-
21981032 10.1111/j.1365-294X.2011.05292.x
-
Sutton JT, Nakagawa S, Robertson BC, Jamieson IG (2011) Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes. Mol Ecol 20:4408-4420
-
(2011)
Mol Ecol
, vol.20
, pp. 4408-4420
-
-
Sutton, J.T.1
Nakagawa, S.2
Robertson, B.C.3
Jamieson, I.G.4
-
70
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
21546353 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
71
-
-
38149122064
-
No evidence for loss of genetic variation following sequential translocations in extant populations of a genetically depauperate species
-
17986194
-
Taylor SS, Jamieson IG (2008) No evidence for loss of genetic variation following sequential translocations in extant populations of a genetically depauperate species. Mol Ecol 17:545-556
-
(2008)
Mol Ecol
, vol.17
, pp. 545-556
-
-
Taylor, S.S.1
Jamieson, I.G.2
-
72
-
-
34547948448
-
Historic and contemporary levels of genetic variation in two New Zealand passerines with different histories of decline
-
17714320 10.1111/j.1420-9101.2007.01362.x 1:CAS:528:DC%2BD2sXhtFaht77O
-
Taylor SS, Jamieson IG, Wallis GP (2007) Historic and contemporary levels of genetic variation in two New Zealand passerines with different histories of decline. J Evol Biol 20:2035-2047
-
(2007)
J Evol Biol
, vol.20
, pp. 2035-2047
-
-
Taylor, S.S.1
Jamieson, I.G.2
Wallis, G.P.3
-
73
-
-
0027968068
-
CLUSTAL-W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
7984417 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D
-
Thompson J, Higgins D, Gibson T (1994) CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
74
-
-
0036566806
-
Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by 'reconditioning PCR'
-
11972349 10.1093/nar/30.9.2083 1:CAS:528:DC%2BD38XktFGhu74%3D
-
Thompson JR, Marcelino LA, Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res 30:2083-2088
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2083-2088
-
-
Thompson, J.R.1
Marcelino, L.A.2
Polz, M.F.3
-
75
-
-
0025923821
-
Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
-
1867860 1:STN:280:DyaK3MzivFSjtw%3D%3D
-
Walsh PS, Metzger DA, Higuchi R (1991) Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513
-
(1991)
Biotechniques
, vol.10
, pp. 506-513
-
-
Walsh, P.S.1
Metzger, D.A.2
Higuchi, R.3
-
76
-
-
0042190374
-
Parasite selection for immunogenetic optimality
-
12958352 10.1126/science.1088293 1:CAS:528:DC%2BD3sXntVKlu7g%3D
-
Wegner KM, Kalbe M, Kurtz J, Reusch TBH, Milinski M (2003) Parasite selection for immunogenetic optimality. Science 301:1343-1343
-
(2003)
Science
, vol.301
, pp. 1343-1343
-
-
Wegner, K.M.1
Kalbe, M.2
Kurtz, J.3
Reusch, T.B.H.4
Milinski, M.5
-
77
-
-
0032933802
-
Concerted evolution of two MHC class II B loci in pheasants and domestic chickens
-
10331274 10.1093/oxfordjournals.molbev.a026130 1:CAS:528: DyaK1MXislShsrg%3D
-
Wittzell H, Bernot A, Auffray C, Zoorob R (1999) Concerted evolution of two MHC class II B loci in pheasants and domestic chickens. Mol Biol Evol 16:479-490
-
(1999)
Mol Biol Evol
, vol.16
, pp. 479-490
-
-
Wittzell, H.1
Bernot, A.2
Auffray, C.3
Zoorob, R.4
-
78
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
17483113 10.1093/molbev/msm088 1:CAS:528:DC%2BD2sXpsVGrs7c%3D
-
Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
79
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
11114436 10.1016/S0169-5347(00)01994-7
-
Yang Z, Bielawski JP (2000) Statistical methods for detecting molecular adaptation. Trends Ecol Evol 15:496-503
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
-
80
-
-
0025021834
-
DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history
-
1967831 10.1073/pnas.87.2.836 1:CAS:528:DyaK3cXptlSktw%3D%3D
-
Yuhki N, O'Brien SJ (1990) DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history. Proc Natl Acad Sci USA 87:836-840
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 836-840
-
-
Yuhki, N.1
O'Brien, S.J.2
-
81
-
-
78650653530
-
454 sequencing reveals extreme complexity of the class II major histocompatibility complex in the collared flycatcher
-
21194449 10.1186/1471-2148-10-395 1:CAS:528:DC%2BC3MXntFWgtg%3D%3D
-
Zagalska-Neubauer M, Babik W, Stuglik M, Gustafsson L, Cichon M, Radwan J (2010) 454 sequencing reveals extreme complexity of the class II major histocompatibility complex in the collared flycatcher. BMC Evol Biol 10:395
-
(2010)
BMC Evol Biol
, vol.10
, pp. 395
-
-
Zagalska-Neubauer, M.1
Babik, W.2
Stuglik, M.3
Gustafsson, L.4
Cichon, M.5
Radwan, J.6
-
82
-
-
0031727088
-
PCR amplification of murine immunoglobulin germline v genes: Strategies for minimization of recombination artefacts
-
9797458 10.1046/j.1440-1711.1998.00772.x 1:CAS:528:DyaK1cXntFGitLk%3D
-
Zylstra P, Rothenfluh HS, Weiller GF, Blanden RV, Steele EJ (1998) PCR amplification of murine immunoglobulin germline V genes: strategies for minimization of recombination artefacts. Immunol Cell Biol 76:395-405
-
(1998)
Immunol Cell Biol
, vol.76
, pp. 395-405
-
-
Zylstra, P.1
Rothenfluh, H.S.2
Weiller, G.F.3
Blanden, R.V.4
Steele, E.J.5
|