Manipulation of FASTQ data with galaxy

Bioinformatics

Volumn 26, Issue 14, 2010, Pages 1783-1785

  Blankenberg, Daniel ^a   Gordon, Assaf ^b   Von Kuster, Gregory ^a   Coraor, Nathan ^a   Taylor, James ^c   Nekrutenko, Anton ^a   Team, Galaxy ^d  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c EMORY UNIVERSITY   (United States)

^d NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA SEQUENCE; FACTUAL DATABASE; GENOMICS; INTERNET; METHODOLOGY;

DATABASES, FACTUAL; GENOMICS; INTERNET; SEQUENCE ANALYSIS, DNA; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 77954489376     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq281     Document Type: Article

References (4)

1. Blankenberg,D. et al. (2007)Aframework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res., 17, 960-964.
2. Blankenberg,D. et al. (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol., Chapter 19, Unit 19.10.1-21.
3. Cock,P.J. et al. (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res., 38, 1767-1771.
4. Taylor,J. et al. (2007) Using galaxy to perform large-scale interactive data analyses. Curr. Protoc. Bioinformatics, Chapter 10, Unit 10.5.