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Volumn 358, Issue , 2013, Pages 3-32

E. coli as an all-rounder: The thin line between commensalism and pathogenicity

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PROBIOTIC AGENT;

EID: 84880167759     PISSN: 0070217X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/82_2012_303     Document Type: Article
Times cited : (261)

References (176)
  • 1
    • 84868305887 scopus 로고    scopus 로고
    • Molecular characterization of commensal Escherichia coli adapted to different compartments of the Porcine Gastrointestinal tract
    • Abraham S, Gordon DM, Chin J et al (2012) Molecular characterization of commensal Escherichia coli adapted to different compartments of the Porcine Gastrointestinal tract. Appl Environ Microbiol 78:6799-6803
    • (2012) Appl Environ Microbiol , vol.78 , pp. 6799-6803
    • Abraham, S.1    Gordon, D.M.2    Chin, J.3
  • 2
    • 77954138397 scopus 로고    scopus 로고
    • Probiotic Escherichia coli Nissle 1917 activates DC and prevents house dust mite allergy through a TLR4-dependent pathway
    • Adam E, Delbrassine L, Bouillot C et al (2010) Probiotic Escherichia coli Nissle 1917 activates DC and prevents house dust mite allergy through a TLR4-dependent pathway. Eur J Immunol 40:1995-2005
    • (2010) Eur J Immunol , vol.40 , pp. 1995-2005
    • Adam, E.1    Delbrassine, L.2    Bouillot, C.3
  • 3
    • 0015797384 scopus 로고
    • Chemotaxis toward sugars in Escherichia coli
    • Adler J, Hazelbauer GL, Dahl MM (1973) Chemotaxis toward sugars in Escherichia coli. J Bacteriol 115:824-847
    • (1973) J Bacteriol , vol.115 , pp. 824-847
    • Adler, J.1    Hazelbauer, G.L.2    Dahl, M.M.3
  • 4
    • 33744963426 scopus 로고    scopus 로고
    • Escherichia coli interactions with Acanthamoeba: A symbiosis with environmental and clinical implications
    • Alsam S, Jeong SR, Sissons J, Dudley R, Kim KS, Khan NA (2006) Escherichia coli interactions with Acanthamoeba: a symbiosis with environmental and clinical implications. J Med Microbiol 55:689-694
    • (2006) J Med Microbiol , vol.55 , pp. 689-694
    • Alsam, S.1    Jeong, S.R.2    Sissons, J.3    Dudley, R.4    Kim, K.S.5    Khan, N.A.6
  • 5
    • 1642374075 scopus 로고    scopus 로고
    • The probiotic Escherichia coli strain Nissle 1917 interferes with invasion of human intestinal epithelial cells by different enteroinvasive bacterial pathogens
    • Altenhoefer A, Oswald S, Sonnenborn U et al (2004) The probiotic Escherichia coli strain Nissle 1917 interferes with invasion of human intestinal epithelial cells by different enteroinvasive bacterial pathogens. FEMS Immunol Med Microbiol 40:223-229
    • (2004) FEMS Immunol Med Microbiol , vol.40 , pp. 223-229
    • Altenhoefer, A.1    Oswald, S.2    Sonnenborn, U.3
  • 6
    • 64349114440 scopus 로고    scopus 로고
    • Genome dynamics in major bacterial pathogens
    • Ambur OH, Davidsen T, Frye SA et al (2009) Genome dynamics in major bacterial pathogens. FEMS Microbiol Rev 33:453-470
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 453-470
    • Ambur, O.H.1    Davidsen, T.2    Frye, S.A.3
  • 7
    • 33748761151 scopus 로고    scopus 로고
    • DsdX is the second D-serine transporter in uropathogenic Escherichia coli clinical isolate CFT073
    • Anfora AT, Welch RA (2006) DsdX is the second D-serine transporter in uropathogenic Escherichia coli clinical isolate CFT073. J Bacteriol 188:6622-6628
    • (2006) J Bacteriol , vol.188 , pp. 6622-6628
    • Anfora, A.T.1    Welch, R.A.2
  • 8
    • 35649023207 scopus 로고    scopus 로고
    • Roles of serine accumulation and catabolism in the colonization of the murine urinary tract by Escherichia coli CFT073
    • Anfora AT, Haugen BJ, Roesch P, Redford P, Welch RA (2007) Roles of serine accumulation and catabolism in the colonization of the murine urinary tract by Escherichia coli CFT073. Infect Immun 75:5298-5304
    • (2007) Infect Immun , vol.75 , pp. 5298-5304
    • Anfora, A.T.1    Haugen, B.J.2    Roesch, P.3    Redford, P.4    Welch, R.A.5
  • 9
    • 79551599525 scopus 로고    scopus 로고
    • Mugsy: Fast multiple alignment of closely related whole genomes
    • Angiuoli SV, Salzberg SL (2011) Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27(3):334-342
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 334-342
    • Angiuoli, S.V.1    Salzberg, S.L.2
  • 10
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: The Keio collection
    • Baba T, Ara T, Hasegawa M et al (2006) Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol Syst Biol 2(2006):0008
    • (2006) Mol Syst Biol , vol.2 , Issue.2006 , pp. 0008
    • Baba, T.1    Ara, T.2    Hasegawa, M.3
  • 11
    • 77956295691 scopus 로고    scopus 로고
    • Fresh fruit and vegetables as vehicles for the transmission of human pathogens
    • Berger CN, Sodha SV, Shaw RK et al (2010) Fresh fruit and vegetables as vehicles for the transmission of human pathogens. Environ Microbiol 12:2385-2397
    • (2010) Environ Microbiol , vol.12 , pp. 2385-2397
    • Berger, C.N.1    Sodha, S.V.2    Shaw, R.K.3
  • 12
    • 4644227367 scopus 로고    scopus 로고
    • Use of deoxyribose by intestinal and extraintestinal pathogenic Escherichia coli strains: A metabolic adaptation involved in competitiveness
    • Bernier-Febreau C, du Merle L, Turlin E et al (2004) Use of deoxyribose by intestinal and extraintestinal pathogenic Escherichia coli strains: a metabolic adaptation involved in competitiveness. Infect Immun 72:6151-6156
    • (2004) Infect Immun , vol.72 , pp. 6151-6156
    • Bernier-Febreau, C.1    Du Merle, L.2    Turlin, E.3
  • 13
    • 79551675099 scopus 로고    scopus 로고
    • Chromosomal instability in enterohaemorrhagic Escherichia coli O157:H7: Impact on adherence, tellurite resistance and colony phenotype
    • Bielaszewska M, Middendorf B, Tarr PI et al (2011) Chromosomal instability in enterohaemorrhagic Escherichia coli O157:H7: impact on adherence, tellurite resistance and colony phenotype. Mol Microbiol 79:1024-1044
    • (2011) Mol Microbiol , vol.79 , pp. 1024-1044
    • Bielaszewska, M.1    Middendorf, B.2    Tarr, P.I.3
  • 14
    • 33748494699 scopus 로고    scopus 로고
    • The affinity of the FimH fimbrial adhesin is receptor-driven and quasi-independent of Escherichia coli pathotypes
    • Bouckaert J, Mackenzie J, de Paz JL et al (2006) The affinity of the FimH fimbrial adhesin is receptor-driven and quasi-independent of Escherichia coli pathotypes. Mol Microbiol 61:1556-1568
    • (2006) Mol Microbiol , vol.61 , pp. 1556-1568
    • Bouckaert, J.1    Mackenzie, J.2    De Paz, J.L.3
  • 15
    • 0031885976 scopus 로고    scopus 로고
    • Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution
    • Boyd EF, Hartl DL (1998) Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J Bacteriol 180:1159-1165
    • (1998) J Bacteriol , vol.180 , pp. 1159-1165
    • Boyd, E.F.1    Hartl, D.L.2
  • 16
    • 39749100653 scopus 로고    scopus 로고
    • A subset of mucosa-associated Escherichia coli isolates from patients with colon cancer, but not Crohn's disease, share pathogenicity islands with urinary pathogenic E. Coli
    • Bronowski C, Smith SL, Yokota K et al (2008) A subset of mucosa-associated Escherichia coli isolates from patients with colon cancer, but not Crohn's disease, share pathogenicity islands with urinary pathogenic E. coli. Microbiology 154:571-583
    • (2008) Microbiology , vol.154 , pp. 571-583
    • Bronowski, C.1    Smith, S.L.2    Yokota, K.3
  • 17
    • 33748082663 scopus 로고    scopus 로고
    • How to become a uropathogen: Comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains
    • Brzuszkiewicz E, Brüggemann H, Liesegang H et al (2006) How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. Proc Natl Acad Sci USA 103:12879-12884
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12879-12884
    • Brzuszkiewicz, E.1    Brüggemann, H.2    Liesegang, H.3
  • 18
    • 82355173436 scopus 로고    scopus 로고
    • Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)
    • Brzuszkiewicz E, Thürmer A, Schuldes J et al (2011) Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC). Arch Microbiol 193:883-891
    • (2011) Arch Microbiol , vol.193 , pp. 883-891
    • Brzuszkiewicz, E.1    Thürmer, A.2    Schuldes, J.3
  • 19
    • 13444253763 scopus 로고    scopus 로고
    • A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: The search for the unit of selection
    • Castillo A, Eguiarte LE, Souza V (2005) A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: the search for the unit of selection. Proc Natl Acad Sci USA 102:1542-1547
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 1542-1547
    • Castillo, A.1    Eguiarte, L.E.2    Souza, V.3
  • 20
    • 0019593643 scopus 로고
    • Genetic diversity and temporal variation in the E. Coli population of a human host
    • Caugant DA, Levin BR, Selander RK (1981) Genetic diversity and temporal variation in the E. coli population of a human host. Genetics 98:467-490
    • (1981) Genetics , vol.98 , pp. 467-490
    • Caugant, D.A.1    Levin, B.R.2    Selander, R.K.3
  • 21
    • 84857649533 scopus 로고    scopus 로고
    • The evolution of the Escherichia coli phylogeny
    • Chaudhuri RR, Henderson IR (2012) The evolution of the Escherichia coli phylogeny. Infect Genet Evol 12:214-226
    • (2012) Infect Genet Evol , vol.12 , pp. 214-226
    • Chaudhuri, R.R.1    Henderson, I.R.2
  • 22
    • 77649289609 scopus 로고    scopus 로고
    • Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
    • e8801
    • Chaudhuri RR, Sebaihia M, Hobman JL et al (2010) Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. PLoS One 5:e8801
    • (2010) PLoS One , vol.5
    • Chaudhuri, R.R.1    Sebaihia, M.2    Hobman, J.L.3
  • 23
    • 33645827531 scopus 로고    scopus 로고
    • Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
    • Chen SL, Hung CS, Xu J et al (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci USA 103:5977-5982
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 5977-5982
    • Chen, S.L.1    Hung, C.S.2    Xu, J.3
  • 25
    • 80052335144 scopus 로고    scopus 로고
    • Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605
    • Clarke DJ, Chaudhuri RR, Martin HM et al (2011) Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605. J Bacteriol 193:4540
    • (2011) J Bacteriol , vol.193 , pp. 4540
    • Clarke, D.J.1    Chaudhuri, R.R.2    Martin, H.M.3
  • 26
    • 0035868567 scopus 로고    scopus 로고
    • The Yersinia high-pathogenicity island is highly predominant in virulence-associated phylogenetic groups of Escherichia coli
    • Clermont O, Bonacorsi S, Bingen E (2001) The Yersinia high-pathogenicity island is highly predominant in virulence-associated phylogenetic groups of Escherichia coli. FEMS Microbiol Lett 196:153-157
    • (2001) FEMS Microbiol Lett , vol.196 , pp. 153-157
    • Clermont, O.1    Bonacorsi, S.2    Bingen, E.3
  • 27
    • 78049387115 scopus 로고    scopus 로고
    • A commensal gone bad: Complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
    • Crossman LC, Chaudhuri RR, Beatson SA et al (2010) A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J Bacteriol 192:5822-5831
    • (2010) J Bacteriol , vol.192 , pp. 5822-5831
    • Crossman, L.C.1    Chaudhuri, R.R.2    Beatson, S.A.3
  • 28
    • 73949118739 scopus 로고    scopus 로고
    • Molecular mechanisms of Escherichia coli pathogenicity
    • Croxen MA, Finlay BB (2010) Molecular mechanisms of Escherichia coli pathogenicity. Nat Rev Microbiol 8:26-38
    • (2010) Nat Rev Microbiol , vol.8 , pp. 26-38
    • Croxen, M.A.1    Finlay, B.B.2
  • 29
    • 33846920093 scopus 로고    scopus 로고
    • Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli
    • Diard M, Baeriswyl S, Clermont O et al (2007) Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli. Microbes Infect 9:214-223
    • (2007) Microbes Infect , vol.9 , pp. 214-223
    • Diard, M.1    Baeriswyl, S.2    Clermont, O.3
  • 30
    • 77957374567 scopus 로고    scopus 로고
    • Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization
    • Diard M, Garry L, Selva M, Mosser T, Denamur E, Matic I (2010) Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization. J Bacteriol 192:4885-4893
    • (2010) J Bacteriol , vol.192 , pp. 4885-4893
    • Diard, M.1    Garry, L.2    Selva, M.3    Mosser, T.4    Denamur, E.5    Matic, I.6
  • 32
    • 84862290950 scopus 로고    scopus 로고
    • Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli
    • Didelot X, Meric G, Falush D, Darling AE (2012) Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli. BMC Genomics 13:256
    • (2012) BMC Genomics , vol.13 , pp. 256
    • Didelot, X.1    Meric, G.2    Falush, D.3    Darling, A.E.4
  • 33
    • 3142726383 scopus 로고    scopus 로고
    • Diversity analysis of commensal porcine Escherichia coli - Associations between genotypes and habitat in the porcine gastrointestinal tract
    • Dixit SM, Gordon DM, Wu XY, Chapman T, Kailasapathy K, Chin JJ (2004) Diversity analysis of commensal porcine Escherichia coli - associations between genotypes and habitat in the porcine gastrointestinal tract. Microbiology 150:1735-1740
    • (2004) Microbiology , vol.150 , pp. 1735-1740
    • Dixit, S.M.1    Gordon, D.M.2    Wu, X.Y.3    Chapman, T.4    Kailasapathy, K.5    Chin, J.J.6
  • 34
    • 24044488599 scopus 로고    scopus 로고
    • (Patho-)genomics of escherichia coli
    • Dobrindt U (2005) (Patho-)Genomics of Escherichia coli. Int J Med Microbiol 295:357-371
    • (2005) Int J Med Microbiol , vol.295 , pp. 357-371
    • Dobrindt, U.1
  • 35
    • 0037337509 scopus 로고    scopus 로고
    • Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays
    • Dobrindt U, Agerer F, Michaelis K et al (2003) Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays. J Bacteriol 185:1831-1840
    • (2003) J Bacteriol , vol.185 , pp. 1831-1840
    • Dobrindt, U.1    Agerer, F.2    Michaelis, K.3
  • 37
    • 4644231373 scopus 로고    scopus 로고
    • Large-scale population structure of human commensal Escherichia coli isolates
    • Escobar-Paramo P, Grenet K, Le Menac'h A et al (2004a) Large-scale population structure of human commensal Escherichia coli isolates. Appl Environ Microbiol 70:5698-5700
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5698-5700
    • Escobar-Paramo, P.1    Grenet, K.2    Le Menac'H, A.3
  • 38
    • 2442667673 scopus 로고    scopus 로고
    • A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli
    • Escobar-Paramo P, Clermont O, Blanc-Potard AB, Bui H, Le Bouguenec C, Denamur E (2004b) A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli. Mol Biol Evol 21:1085-1094
    • (2004) Mol Biol Evol , vol.21 , pp. 1085-1094
    • Escobar-Paramo, P.1    Clermont, O.2    Blanc-Potard, A.B.3    Bui, H.4    Le Bouguenec, C.5    Denamur, E.6
  • 39
    • 33749383917 scopus 로고    scopus 로고
    • Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates
    • Escobar-Paramo P, Le Menac'h A, Le Gall T et al (2006) Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Environ Microbiol 8:1975-1984
    • (2006) Environ Microbiol , vol.8 , pp. 1975-1984
    • Escobar-Paramo, P.1    Le Menac'H, A.2    Le Gall, T.3
  • 40
    • 79251619232 scopus 로고    scopus 로고
    • Cell-to-cell transformation in Escherichia coli: A novel type of natural transformation involving cell-derived DNA and a putative promoting pheromone
    • e16355
    • Etchuuya R, Ito M, Kitano S, Shigi F, Sobue R, Maeda S (2011) Cell-to-cell transformation in Escherichia coli: a novel type of natural transformation involving cell-derived DNA and a putative promoting pheromone. PLoS One 6:e16355
    • (2011) PLoS One , vol.6
    • Etchuuya, R.1    Ito, M.2    Kitano, S.3    Shigi, F.4    Sobue, R.5    Maeda, S.6
  • 41
    • 40749150035 scopus 로고    scopus 로고
    • Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine
    • Fabich AJ, Jones SA, Chowdhury FZ et al (2008) Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine. Infect Immun 76:1143-1152
    • (2008) Infect Immun , vol.76 , pp. 1143-1152
    • Fabich, A.J.1    Jones, S.A.2    Chowdhury, F.Z.3
  • 42
    • 34249893071 scopus 로고    scopus 로고
    • The salmochelin siderophore receptor IroN contributes to invasion of urothelial cells by extraintestinal pathogenic Escherichia coli in vitro
    • Feldmann F, Sorsa LJ, Hildinger K, Schubert S (2007) The salmochelin siderophore receptor IroN contributes to invasion of urothelial cells by extraintestinal pathogenic Escherichia coli in vitro. Infect Immun 75:3183-3187
    • (2007) Infect Immun , vol.75 , pp. 3183-3187
    • Feldmann, F.1    Sorsa, L.J.2    Hildinger, K.3    Schubert, S.4
  • 43
    • 53849112279 scopus 로고    scopus 로고
    • Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5
    • Fricke WF, Wright MS, Lindell AH et al (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J Bacteriol 190:6779-6794
    • (2008) J Bacteriol , vol.190 , pp. 6779-6794
    • Fricke, W.F.1    Wright, M.S.2    Lindell, A.H.3
  • 44
    • 33846551381 scopus 로고    scopus 로고
    • Biology's next revolution
    • Goldenfeld N, Woese C (2007) Biology's next revolution. Nature 445:369
    • (2007) Nature , vol.445 , pp. 369
    • Goldenfeld, N.1    Woese, C.2
  • 45
    • 0346882653 scopus 로고    scopus 로고
    • The distribution and genetic structure of Escherichia coli in Australian vertebrates: Host and geographic effects
    • Gordon DM, Cowling A (2003) The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects. Microbiology 149:3575-3586
    • (2003) Microbiology , vol.149 , pp. 3575-3586
    • Gordon, D.M.1    Cowling, A.2
  • 46
    • 48449091389 scopus 로고    scopus 로고
    • Evidence of horizontal gene transfer between human and animal commensal Escherichia coli strains identified by microarray
    • Grasselli E, Francois P, Gutacker M et al (2008) Evidence of horizontal gene transfer between human and animal commensal Escherichia coli strains identified by microarray. FEMS Immunol Med Microbiol 53:351-358
    • (2008) FEMS Immunol Med Microbiol , vol.53 , pp. 351-358
    • Grasselli, E.1    Francois, P.2    Gutacker, M.3
  • 47
    • 0036838010 scopus 로고    scopus 로고
    • A single nucleotide exchange in the wzy gene is responsible for the semi-rough O6 lipopolysaccharide phenotype and serum sensitivity of Escherichia coli strain Nissle 1917
    • Grozdanov L, Zähringer U, Blum-Oehler G et al (2002) A single nucleotide exchange in the wzy gene is responsible for the semi-rough O6 lipopolysaccharide phenotype and serum sensitivity of Escherichia coli strain Nissle 1917. J Bacteriol 184:5912-5925
    • (2002) J Bacteriol , vol.184 , pp. 5912-5925
    • Grozdanov, L.1    Zähringer, U.2    Blum-Oehler, G.3
  • 48
    • 3843116530 scopus 로고    scopus 로고
    • Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917
    • Grozdanov L, Raasch C, Schulze J et al (2004) Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917. J Bacteriol 186:5432-5441
    • (2004) J Bacteriol , vol.186 , pp. 5432-5441
    • Grozdanov, L.1    Raasch, C.2    Schulze, J.3
  • 49
    • 0036087894 scopus 로고    scopus 로고
    • Assessment of virulence of uropathogenic Escherichia coli type 1 fimbrial mutants in which the invertible element is phase-locked on or off
    • Gunther NWt, Snyder JA, Lockatell V, Blomfield I, Johnson DE, Mobley HL (2002) Assessment of virulence of uropathogenic Escherichia coli type 1 fimbrial mutants in which the invertible element is phase-locked on or off. Infect Immun 70:3344-3354
    • (2002) Infect Immun , vol.70 , pp. 3344-3354
    • Nwt, G.1    Snyder, J.A.2    Lockatell, V.3    Blomfield, I.4    Johnson, D.E.5    Mobley, H.L.6
  • 50
    • 84858428953 scopus 로고    scopus 로고
    • Anti-inflammatory modulation of immune response by probiotic Escherichia coli Nissle 1917 in human blood mononuclear cells
    • Güttsches AK, Loseke S, Zähringer U et al (2012) Anti-inflammatory modulation of immune response by probiotic Escherichia coli Nissle 1917 in human blood mononuclear cells. Innate Immun 18:204-216
    • (2012) Innate Immun , vol.18 , pp. 204-216
    • Güttsches, A.K.1    Loseke, S.2    Zähringer, U.3
  • 52
    • 0042855695 scopus 로고    scopus 로고
    • Prokaryotic chromosomes and disease
    • Hacker J, Hentschel U, Dobrindt U (2003) Prokaryotic chromosomes and disease. Science 301:790-793
    • (2003) Science , vol.301 , pp. 790-793
    • Hacker, J.1    Hentschel, U.2    Dobrindt, U.3
  • 53
    • 67650066587 scopus 로고    scopus 로고
    • The K5 capsule of Escherichia coli strain Nissle 1917 is important in mediating interactions with intestinal epithelial cells and chemokine induction
    • Hafez M, Hayes K, Goldrick M, Warhurst G, Grencis R, Roberts IS (2009) The K5 capsule of Escherichia coli strain Nissle 1917 is important in mediating interactions with intestinal epithelial cells and chemokine induction. Infect Immun 77:2995-3003
    • (2009) Infect Immun , vol.77 , pp. 2995-3003
    • Hafez, M.1    Hayes, K.2    Goldrick, M.3    Warhurst, G.4    Grencis, R.5    Roberts, I.S.6
  • 54
    • 83155164533 scopus 로고    scopus 로고
    • Calculating orthologs in Bacteria and Archaea: A divide and conquer approach
    • e28388
    • Halachev MR, Loman NJ, Pallen MJ (2011) Calculating orthologs in Bacteria and Archaea: a divide and conquer approach. PLoS One 6:e28388
    • (2011) PLoS One , vol.6
    • Halachev, M.R.1    Loman, N.J.2    Pallen, M.J.3
  • 55
    • 38849195550 scopus 로고    scopus 로고
    • The ferric yersiniabactin uptake receptor FyuA is required for efficient biofilm formation by urinary tract infectious Escherichia coli in human urine
    • Hancock V, Ferrieres L, Klemm P (2008) The ferric yersiniabactin uptake receptor FyuA is required for efficient biofilm formation by urinary tract infectious Escherichia coli in human urine. Microbiology 154:167-175
    • (2008) Microbiology , vol.154 , pp. 167-175
    • Hancock, V.1    Ferrieres, L.2    Klemm, P.3
  • 56
    • 77950486499 scopus 로고    scopus 로고
    • Probiotic Escherichia coli strain Nissle 1917 outcompetes intestinal pathogens during biofilm formation
    • Hancock V, Dahl M, Klemm P (2010a) Probiotic Escherichia coli strain Nissle 1917 outcompetes intestinal pathogens during biofilm formation. J Med Microbiol 59:392-399
    • (2010) J Med Microbiol , vol.59 , pp. 392-399
    • Hancock, V.1    Dahl, M.2    Klemm, P.3
  • 57
    • 78650515414 scopus 로고    scopus 로고
    • Functional genomics of probiotic Escherichia coli Nissle 1917 and 83972, and UPEC strain CFT073: Comparison of transcriptomes, growth and biofilm formation
    • Hancock V, Vejborg RM, Klemm P (2010b) Functional genomics of probiotic Escherichia coli Nissle 1917 and 83972, and UPEC strain CFT073: comparison of transcriptomes, growth and biofilm formation. Mol Genet Genomics 284:437-454
    • (2010) Mol Genet Genomics , vol.284 , pp. 437-454
    • Hancock, V.1    Vejborg, R.M.2    Klemm, P.3
  • 58
    • 19944431737 scopus 로고    scopus 로고
    • Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome
    • Hashimoto M, Ichimura T, Mizoguchi H et al (2005) Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome. Mol Microbiol 55:137-149
    • (2005) Mol Microbiol , vol.55 , pp. 137-149
    • Hashimoto, M.1    Ichimura, T.2    Mizoguchi, H.3
  • 59
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi T, Makino K, Ohnishi M et al (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8:11-22
    • (2001) DNA Res , vol.8 , pp. 11-22
    • Hayashi, T.1    Makino, K.2    Ohnishi, M.3
  • 60
    • 13444272526 scopus 로고    scopus 로고
    • Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83:K24:H31)
    • Hejnova J, Dobrindt U, Nemcova R et al (2005) Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83:K24:H31). Microbiology 151:385-398
    • (2005) Microbiology , vol.151 , pp. 385-398
    • Hejnova, J.1    Dobrindt, U.2    Nemcova, R.3
  • 61
    • 59249104866 scopus 로고    scopus 로고
    • Order and disorder during Escherichia coli divergence
    • e1000335
    • Hendrickson H (2009) Order and disorder during Escherichia coli divergence. PLoS Genet 5:e1000335
    • (2009) PLoS Genet , vol.5
    • Hendrickson, H.1
  • 64
    • 66949116646 scopus 로고    scopus 로고
    • Colonization outwith the colon: Plants as an alternative environmental reservoir for human pathogenic enterobacteria
    • Holden N, Pritchard L, Toth I (2009) Colonization outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMS Microbiol Rev 33:689-703
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 689-703
    • Holden, N.1    Pritchard, L.2    Toth, I.3
  • 65
    • 79953292158 scopus 로고    scopus 로고
    • The probiotic Escherichia coli Nissle 1917 reduces pathogen invasion and modulates cytokine expression in Caco-2 cells infected with Crohn's disease-associated E. Coli LF82
    • Huebner C, Ding Y, Petermann I, Knapp C, Ferguson LR (2011) The probiotic Escherichia coli Nissle 1917 reduces pathogen invasion and modulates cytokine expression in Caco-2 cells infected with Crohn's disease-associated E. coli LF82. Appl Environ Microbiol 77:2541-2544
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2541-2544
    • Huebner, C.1    Ding, Y.2    Petermann, I.3    Knapp, C.4    Ferguson, L.R.5
  • 66
    • 0036094156 scopus 로고    scopus 로고
    • Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection
    • Hung CS, Bouckaert J, Hung D et al (2002) Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection. Mol Microbiol 44:903-915
    • (2002) Mol Microbiol , vol.44 , pp. 903-915
    • Hung, C.S.1    Bouckaert, J.2    Hung, D.3
  • 67
    • 84868007353 scopus 로고    scopus 로고
    • Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
    • Huson DH, Scornavacca C (2012) Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst Biol 61:1061-1067
    • (2012) Syst Biol , vol.61 , pp. 1061-1067
    • Huson, D.H.1    Scornavacca, C.2
  • 68
    • 58149498183 scopus 로고    scopus 로고
    • Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69
    • Iguchi A, Thomson NR, Ogura Y et al (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J Bacteriol 191:347-354
    • (2009) J Bacteriol , vol.191 , pp. 347-354
    • Iguchi, A.1    Thomson, N.R.2    Ogura, Y.3
  • 70
    • 34247846229 scopus 로고    scopus 로고
    • The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. Coli genomes
    • Johnson TJ, Kariyawasam S, Wannemuehler Y et al (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J Bacteriol 189:3228-3236
    • (2007) J Bacteriol , vol.189 , pp. 3228-3236
    • Johnson, T.J.1    Kariyawasam, S.2    Wannemuehler, Y.3
  • 71
    • 57349194268 scopus 로고    scopus 로고
    • Molecular epidemiology and phylogenetic distribution of the Escherichia coli pks genomic island
    • Johnson JR, Johnston B, Kuskowski MA, Nougayrède JP, Oswald E (2008) Molecular epidemiology and phylogenetic distribution of the Escherichia coli pks genomic island. J Clin Microbiol 46:3906-3911
    • (2008) J Clin Microbiol , vol.46 , pp. 3906-3911
    • Johnson, J.R.1    Johnston, B.2    Kuskowski, M.A.3    Nougayrède, J.P.4    Oswald, E.5
  • 74
    • 84865709237 scopus 로고    scopus 로고
    • The enemy within us: Lessons from the 2011 European Escherichia coli O104:H4 outbreak
    • Karch H, Denamur E, Dobrindt U et al (2012) The enemy within us: lessons from the 2011 European Escherichia coli O104:H4 outbreak. EMBO Mol Med 4:841-848
    • (2012) EMBO Mol Med , vol.4 , pp. 841-848
    • Karch, H.1    Denamur, E.2    Dobrindt, U.3
  • 75
    • 34547913808 scopus 로고    scopus 로고
    • Construction of consecutive deletions of the Escherichia coli chromosome
    • Kato J, Hashimoto M (2007) Construction of consecutive deletions of the Escherichia coli chromosome. Mol Systems Biol 3:132
    • (2007) Mol Systems Biol , vol.3 , pp. 132
    • Kato, J.1    Hashimoto, M.2
  • 76
    • 29644436776 scopus 로고    scopus 로고
    • Molecular characterization of the Escherichia coli asymptomatic bacteriuria strain 83972: The taming of a pathogen
    • Klemm P, Roos V, Ulett GC, Svanborg C, Schembri MA (2006) Molecular characterization of the Escherichia coli asymptomatic bacteriuria strain 83972: the taming of a pathogen. Infect Immun 74:781-785
    • (2006) Infect Immun , vol.74 , pp. 781-785
    • Klemm, P.1    Roos, V.2    Ulett, G.C.3    Svanborg, C.4    Schembri, M.A.5
  • 77
    • 80555150609 scopus 로고    scopus 로고
    • What defines extraintestinal pathogenic Escherichia coli?
    • Köhler CD, Dobrindt U (2011) What defines extraintestinal pathogenic Escherichia coli? Int J Med Microbiol 301:642-647
    • (2011) Int J Med Microbiol , vol.301 , pp. 642-647
    • Köhler, C.D.1    Dobrindt, U.2
  • 78
    • 80455168604 scopus 로고    scopus 로고
    • Conversion of commensal Escherichia coli K-12 to an invasive form via expression of a mutant histone-like protein
    • Koli P, Sudan S, Fitzgerald D, Adhya S, Kar S (2011) Conversion of commensal Escherichia coli K-12 to an invasive form via expression of a mutant histone-like protein. MBio 2(5):e00182-11
    • (2011) MBio , vol.2 , Issue.5
    • Koli, P.1    Sudan, S.2    Fitzgerald, D.3    Adhya, S.4    Kar, S.5
  • 79
    • 78650868870 scopus 로고    scopus 로고
    • Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue
    • Krause DO, Little AC, Dowd SE, Bernstein CN (2011) Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue. J Bacteriol 193:583
    • (2011) J Bacteriol , vol.193 , pp. 583
    • Krause, D.O.1    Little, A.C.2    Dowd, S.E.3    Bernstein, C.N.4
  • 80
    • 79957902715 scopus 로고    scopus 로고
    • Acute Escherichia coli prostatitis in previously health young men: Bacterial virulence factors, antimicrobial resistance, and clinical outcomes
    • Krieger JN, Dobrindt U, Riley DE, Oswald E (2011) Acute Escherichia coli prostatitis in previously health young men: bacterial virulence factors, antimicrobial resistance, and clinical outcomes. Urology 77:1420-1425
    • (2011) Urology , vol.77 , pp. 1420-1425
    • Krieger, J.N.1    Dobrindt, U.2    Riley, D.E.3    Oswald, E.4
  • 81
    • 84862988018 scopus 로고    scopus 로고
    • A double-blind placebo-controlled trial to study therapeutic effects of probiotic Escherichia coli Nissle 1917 in subgroups of patients with irritable bowel syndrome
    • Kruis W, Chrubasik S, Boehm S, Stange C, Schulze J (2012) A double-blind placebo-controlled trial to study therapeutic effects of probiotic Escherichia coli Nissle 1917 in subgroups of patients with irritable bowel syndrome. Int J Colorectal Dis 27:467-474
    • (2012) Int J Colorectal Dis , vol.27 , pp. 467-474
    • Kruis, W.1    Chrubasik, S.2    Boehm, S.3    Stange, C.4    Schulze, J.5
  • 82
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, Phillippy A, Delcher AL et al (2004) Versatile and open software for comparing large genomes. Genome Biol 5:R12
    • (2004) Genome Biol , vol.5
    • Kurtz, S.1    Phillippy, A.2    Delcher, A.L.3
  • 83
    • 68849091588 scopus 로고    scopus 로고
    • In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence
    • Laing CR, Buchanan C, Taboada EN et al (2009) In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence. BMC Genomics 10:287
    • (2009) BMC Genomics , vol.10 , pp. 287
    • Laing, C.R.1    Buchanan, C.2    Taboada, E.N.3
  • 84
    • 27744471448 scopus 로고    scopus 로고
    • Role of motility in the colonization of uropathogenic Escherichia coli in the urinary tract
    • Lane MC, Lockatell V, Monterosso G et al (2005) Role of motility in the colonization of uropathogenic Escherichia coli in the urinary tract. Infect Immun 73:7644-7656
    • (2005) Infect Immun , vol.73 , pp. 7644-7656
    • Lane, M.C.1    Lockatell, V.2    Monterosso, G.3
  • 85
    • 36749065533 scopus 로고    scopus 로고
    • Expression of flagella is coincident with uropathogenic Escherichia coli ascension to the upper urinary tract
    • Lane MC, Alteri CJ, Smith SN, Mobley HL (2007) Expression of flagella is coincident with uropathogenic Escherichia coli ascension to the upper urinary tract. Proc Natl Acad Sci U S A 104:16669-16674
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 16669-16674
    • Lane, M.C.1    Alteri, C.J.2    Smith, S.N.3    Mobley, H.L.4
  • 86
    • 78649631740 scopus 로고    scopus 로고
    • Sugar metabolism, an additional virulence factor in enterobacteria
    • Le Bouguénec C, Schouler C (2011) Sugar metabolism, an additional virulence factor in enterobacteria. Int J Med Microbiol 301:1-6
    • (2011) Int J Med Microbiol , vol.301 , pp. 1-6
    • Le Bouguénec, C.1    Schouler, C.2
  • 87
    • 35848958139 scopus 로고    scopus 로고
    • Extraintestinal virulence is a coincidental byproduct of commensalism in B2 phylogenetic group Escherichia coli strains
    • Le Gall T, Clermont O, Gouriou S et al (2007) Extraintestinal virulence is a coincidental byproduct of commensalism in B2 phylogenetic group Escherichia coli strains. Mol Biol Evol 24:2373-2384
    • (2007) Mol Biol Evol , vol.24 , pp. 2373-2384
    • Le Gall, T.1    Clermont, O.2    Gouriou, S.3
  • 88
    • 77958034251 scopus 로고    scopus 로고
    • Phylogenetic groups and virulence factors in pathogenic and commensal strains of Escherichia coli and their association with blaCTXM
    • Lee S, Yu JK, Park K, Oh EJ, Kim SY, Park YJ (2010) Phylogenetic groups and virulence factors in pathogenic and commensal strains of Escherichia coli and their association with blaCTXM. Ann Clin Lab Sci 40:361-367
    • (2010) Ann Clin Lab Sci , vol.40 , pp. 361-367
    • Lee, S.1    Yu, J.K.2    Park, K.3    Oh, E.J.4    Kim, S.Y.5    Park, Y.J.6
  • 89
    • 79959573534 scopus 로고    scopus 로고
    • Obscured phylogeny and possible recombinational dormancy in Escherichia coli
    • Leopold SR, Sawyer SA, Whittam TS, Tarr PI (2011) Obscured phylogeny and possible recombinational dormancy in Escherichia coli. BMC Evol Biol 11:183
    • (2011) BMC Evol Biol , vol.11 , pp. 183
    • Leopold, S.R.1    Sawyer, S.A.2    Whittam, T.S.3    Tarr, P.I.4
  • 90
    • 33646942675 scopus 로고    scopus 로고
    • Iha from an Escherichia coli urinary tract infection outbreak clonal group A strain is expressed in vivo in the mouse urinary tract and functions as a catecholate siderophore receptor
    • Léveillé S, Caza M, Johnson JR, Clabots C, Sabri M, Dozois CM (2006) Iha from an Escherichia coli urinary tract infection outbreak clonal group A strain is expressed in vivo in the mouse urinary tract and functions as a catecholate siderophore receptor. Infect Immun 74:3427-3436
    • (2006) Infect Immun , vol.74 , pp. 3427-3436
    • Léveillé, S.1    Caza, M.2    Johnson, J.R.3    Clabots, C.4    Sabri, M.5    Dozois, C.M.6
  • 91
    • 78049247160 scopus 로고    scopus 로고
    • Phylogenetic groups and pathogenicity island markers in fecal Escherichia coli isolates from asymptomatic humans in China
    • Li B, Sun JY, Han LZ, Huang XH, Fu Q, Ni YX (2010) Phylogenetic groups and pathogenicity island markers in fecal Escherichia coli isolates from asymptomatic humans in China. Appl Environ Microbiol 76:6698-6700
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6698-6700
    • Li, B.1    Sun, J.Y.2    Han, L.Z.3    Huang, X.H.4    Fu, Q.5    Ni, Y.X.6
  • 92
    • 66149083657 scopus 로고    scopus 로고
    • Genomic islands of uropathogenic Escherichia coli contribute to virulence
    • Lloyd AL, Henderson TA, Vigil PD, Mobley HL (2009) Genomic islands of uropathogenic Escherichia coli contribute to virulence. J Bacteriol 191:3469-3481
    • (2009) J Bacteriol , vol.191 , pp. 3469-3481
    • Lloyd, A.L.1    Henderson, T.A.2    Vigil, P.D.3    Mobley, H.L.4
  • 93
    • 84862907625 scopus 로고    scopus 로고
    • Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10
    • Lu S, Zhang X, Zhu Y, Kim KS, Yang J, Jin Q (2011) Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10. J Bacteriol 193:7005
    • (2011) J Bacteriol , vol.193 , pp. 7005
    • Lu, S.1    Zhang, X.2    Zhu, Y.3    Kim, K.S.4    Yang, J.5    Jin, Q.6
  • 94
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced Escherichia coli genomes
    • Lukjancenko O, Wassenaar TM, Ussery DW (2010) Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol 60:708-720
    • (2010) Microb Ecol , vol.60 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.M.2    Ussery, D.W.3
  • 95
    • 79955559191 scopus 로고    scopus 로고
    • Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
    • Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT (2011) Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci U S A 108:7200-7205
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 7200-7205
    • Luo, C.1    Walk, S.T.2    Gordon, D.M.3    Feldgarden, M.4    Tiedje, J.M.5    Konstantinidis, K.T.6
  • 96
    • 33745112085 scopus 로고    scopus 로고
    • Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
    • Mau B, Glasner JD, Darling AE, Perna NT (2006) Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. Genome Biol 7:R44
    • (2006) Genome Biol , vol.7
    • Mau, B.1    Glasner, J.D.2    Darling, A.E.3    Perna, N.T.4
  • 99
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • e22751
    • Mellmann A, Harmsen D, Cummings CA et al (2011) Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One 6:e22751
    • (2011) PLoS One , vol.6
    • Mellmann, A.1    Harmsen, D.2    Cummings, C.A.3
  • 100
    • 0015413647 scopus 로고
    • Chemotaxis toward amino acids in Escherichia coli
    • Mesibov R, Adler J (1972) Chemotaxis toward amino acids in Escherichia coli. J Bacteriol 112:315-326
    • (1972) J Bacteriol , vol.112 , pp. 315-326
    • Mesibov, R.1    Adler, J.2
  • 101
    • 0025133386 scopus 로고
    • Molecular evolution of the Escherichia coli chromosome. III. Clonal frames
    • Milkman R, Bridges MM (1990) Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. Genetics 126:505-517
    • (1990) Genetics , vol.126 , pp. 505-517
    • Milkman, R.1    Bridges, M.M.2
  • 102
    • 77958603351 scopus 로고    scopus 로고
    • Complete genome sequence of Crohn's diseaseassociated adherent-invasive E. Coli strain LF82
    • e12714
    • Miquel S, Peyretaillade E, Claret L et al. (2010) Complete genome sequence of Crohn's diseaseassociated adherent-invasive E. coli strain LF82. PLoS One 5:e12714
    • (2010) PLoS One , vol.5
    • Miquel, S.1    Peyretaillade, E.2    Claret, L.3
  • 103
    • 65349144830 scopus 로고    scopus 로고
    • Characterization of cellulose production in Escherichia coli Nissle 1917 and its biological consequences
    • Monteiro C, Saxena I, Wang X et al (2009) Characterization of cellulose production in Escherichia coli Nissle 1917 and its biological consequences. Environ Microbiol 11:1105-1116
    • (2009) Environ Microbiol , vol.11 , pp. 1105-1116
    • Monteiro, C.1    Saxena, I.2    Wang, X.3
  • 104
    • 71249107921 scopus 로고    scopus 로고
    • O-acetyltransferase gene neuO is segregated according to phylogenetic background and contributes to environmental desiccation resistance in Escherichia coli K1
    • Mordhorst IL, Claus H, Ewers C et al (2009) O-acetyltransferase gene neuO is segregated according to phylogenetic background and contributes to environmental desiccation resistance in Escherichia coli K1. Environ Microbiol 11:3154-3165
    • (2009) Environ Microbiol , vol.11 , pp. 3154-3165
    • Mordhorst, I.L.1    Claus, H.2    Ewers, C.3
  • 105
    • 77952692819 scopus 로고    scopus 로고
    • Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli
    • Moriel DG, Bertoldi I, Spagnuolo A et al (2010) Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli. Proc Natl Acad Sci U S A 107:9072-9077
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 9072-9077
    • Moriel, D.G.1    Bertoldi, I.2    Spagnuolo, A.3
  • 106
    • 78649335559 scopus 로고    scopus 로고
    • Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. Coli pathotypes
    • Nash JH, Villegas A, Kropinski AM et al (2010) Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes. BMC Genomics 11:667
    • (2010) BMC Genomics , vol.11 , pp. 667
    • Nash, J.H.1    Villegas, A.2    Kropinski, A.M.3
  • 107
    • 33747137269 scopus 로고    scopus 로고
    • Escherichia coli induces DNA double-strand breaks in eukaryotic cells
    • Nougayrède JP, Homburg S, Taieb F et al (2006) Escherichia coli induces DNA double-strand breaks in eukaryotic cells. Science 313:848-851
    • (2006) Science , vol.313 , pp. 848-851
    • Nougayrède, J.P.1    Homburg, S.2    Taieb, F.3
  • 108
    • 84865173667 scopus 로고    scopus 로고
    • Escherichia coli strains with the capacity for long-term persistence in the bowel microbiota carry the potentially genotoxic pks island
    • Nowrouzian FL, Oswald E (2012) Escherichia coli strains with the capacity for long-term persistence in the bowel microbiota carry the potentially genotoxic pks island. Microb Pathog 53:180-182
    • (2012) Microb Pathog , vol.53 , pp. 180-182
    • Nowrouzian, F.L.1    Oswald, E.2
  • 109
    • 0035068783 scopus 로고    scopus 로고
    • P fimbriae, capsule and aerobactin characterize colonic resident Escherichia coli
    • Nowrouzian F, Adlerberth I, Wold AE (2001) P fimbriae, capsule and aerobactin characterize colonic resident Escherichia coli. Epidemiol Infect 126:11-18
    • (2001) Epidemiol Infect , vol.126 , pp. 11-18
    • Nowrouzian, F.1    Adlerberth, I.2    Wold, A.E.3
  • 110
    • 0038309531 scopus 로고    scopus 로고
    • Escherichia coli in infants' intestinal microflora: Colonization rate, strain turnover, and virulence gene carriage
    • Nowrouzian F, Hesselmar B, Saalman R et al (2003) Escherichia coli in infants' intestinal microflora: colonization rate, strain turnover, and virulence gene carriage. Pediatr Res 54:8-14
    • (2003) Pediatr Res , vol.54 , pp. 8-14
    • Nowrouzian, F.1    Hesselmar, B.2    Saalman, R.3
  • 111
    • 15544390264 scopus 로고    scopus 로고
    • Escherichia coli strains belonging to phylogenetic group B2 have superior capacity to persist in the intestinal microflora of infants
    • Nowrouzian FL, Wold AE, Adlerberth I (2005) Escherichia coli strains belonging to phylogenetic group B2 have superior capacity to persist in the intestinal microflora of infants. J Infect Dis 191:1078-1083
    • (2005) J Infect Dis , vol.191 , pp. 1078-1083
    • Nowrouzian, F.L.1    Wold, A.E.2    Adlerberth, I.3
  • 112
    • 33646045061 scopus 로고    scopus 로고
    • Enhanced persistence in the colonic microbiota of Escherichia coli strains belonging to phylogenetic group B2: Role of virulence factors and adherence to colonic cells
    • Nowrouzian FL, Adlerberth I, Wold AE (2006) Enhanced persistence in the colonic microbiota of Escherichia coli strains belonging to phylogenetic group B2: role of virulence factors and adherence to colonic cells. Microbes Infect 8:834-840
    • (2006) Microbes Infect , vol.8 , pp. 834-840
    • Nowrouzian, F.L.1    Adlerberth, I.2    Wold, A.E.3
  • 113
    • 65949088591 scopus 로고    scopus 로고
    • Phylogenetic group B2 Escherichia coli strains from the bowel microbiota of Pakistani infants carry few virulence genes and lack the capacity for long-term persistence
    • Nowrouzian FL, Ostblom AE, Wold AE, Adlerberth I (2009) Phylogenetic group B2 Escherichia coli strains from the bowel microbiota of Pakistani infants carry few virulence genes and lack the capacity for long-term persistence. Clin Microbiol Infect 15:466-472
    • (2009) Clin Microbiol Infect , vol.15 , pp. 466-472
    • Nowrouzian, F.L.1    Ostblom, A.E.2    Wold, A.E.3    Adlerberth, I.4
  • 114
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Ochman H, Selander RK (1984) Standard reference strains of Escherichia coli from natural populations. J Bacteriol 157:690-693
    • (1984) J Bacteriol , vol.157 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 115
    • 70449568272 scopus 로고    scopus 로고
    • Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
    • Ogura Y, Ooka T, Iguchi A et al (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc Natl Acad Sci USA 106:17939-17944
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17939-17944
    • Ogura, Y.1    Ooka, T.2    Iguchi, A.3
  • 116
    • 84868607652 scopus 로고    scopus 로고
    • Genotoxicity of Escherichia coli Nissle 1917 strain cannot be dissociated from its probiotic activity
    • Olier M, Marcq I, Salvador-Cartier C et al. (2012) Genotoxicity of Escherichia coli Nissle 1917 strain cannot be dissociated from its probiotic activity. Gut Microbes 3(6):501-509
    • (2012) Gut Microbes , vol.3 , Issue.6 , pp. 501-509
    • Olier, M.1    Marcq, I.2    Salvador-Cartier, C.3
  • 117
    • 59149104994 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult
    • Oshima K, Toh H, Ogura Y et al (2008) Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult. DNA Res 15:375-386
    • (2008) DNA Res , vol.15 , pp. 375-386
    • Oshima, K.1    Toh, H.2    Ogura, Y.3
  • 118
    • 79953290167 scopus 로고    scopus 로고
    • Pathogenicity island markers, virulence determinants malX and usp, and the capacity of Escherichia coli to persist in infants' commensal microbiotas
    • Ostblom A, Adlerberth I, Wold AE, Nowrouzian FL (2011) Pathogenicity island markers, virulence determinants malX and usp, and the capacity of Escherichia coli to persist in infants' commensal microbiotas. Appl Environ Microbiol 77:2303-2308
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2303-2308
    • Ostblom, A.1    Adlerberth, I.2    Wold, A.E.3    Nowrouzian, F.L.4
  • 119
    • 0035945586 scopus 로고    scopus 로고
    • Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
    • Perna NT, Plunkett G 3rd, Burland V et al (2001) Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature 409:529-533
    • (2001) Nature , vol.409 , pp. 529-533
    • Perna, N.T.1    Plunkett III, G.2    Burland, V.3
  • 120
    • 84859718298 scopus 로고    scopus 로고
    • Effect of fructooligosaccharide metabolism on chicken colonization by an extra-intestinal pathogenic Escherichia coli strain
    • e35475
    • Porcheron G, Chanteloup NK, Trotereau A, Bree A, Schouler C (2012) Effect of fructooligosaccharide metabolism on chicken colonization by an extra-intestinal pathogenic Escherichia coli strain. PLoS One 7:e35475
    • (2012) PLoS One , vol.7
    • Porcheron, G.1    Chanteloup, N.K.2    Trotereau, A.3    Bree, A.4    Schouler, C.5
  • 121
    • 70350439157 scopus 로고    scopus 로고
    • Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae
    • Putze J, Hennequin C, Nougayrède JP et al (2009) Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae. Infect Immun 77:4696-4703
    • (2009) Infect Immun , vol.77 , pp. 4696-4703
    • Putze, J.1    Hennequin, C.2    Nougayrède, J.P.3
  • 122
    • 53849104729 scopus 로고    scopus 로고
    • The pangenome structure of Escherichia coli: Comparative genomic analysis of E. Coli commensal and pathogenic isolates
    • Rasko DA, Rosovitz MJ, Myers GS et al (2008) The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol 190:6881-6893
    • (2008) J Bacteriol , vol.190 , pp. 6881-6893
    • Rasko, D.A.1    Rosovitz, M.J.2    Myers, G.S.3
  • 123
    • 80052150179 scopus 로고    scopus 로고
    • Origins of the E. Coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
    • Rasko DA, Webster DR, Sahl JW et al (2011) Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N Engl J Med 365:709-717
    • (2011) N Engl J Med , vol.365 , pp. 709-717
    • Rasko, D.A.1    Webster, D.R.2    Sahl, J.W.3
  • 125
    • 2442646490 scopus 로고    scopus 로고
    • The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition
    • Ren CP, Chaudhuri RR, Fivian A et al (2004) The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. J Bacteriology 186:3547-3560
    • (2004) J Bacteriology , vol.186 , pp. 3547-3560
    • Ren, C.P.1    Chaudhuri, R.R.2    Fivian, A.3
  • 126
    • 0038723388 scopus 로고    scopus 로고
    • Uropathogenic Escherichia coli use D-serine deaminase to modulate infection of the murine urinary tract
    • Roesch PL, Redford P, Batchelet S et al (2003) Uropathogenic Escherichia coli use D-serine deaminase to modulate infection of the murine urinary tract. Mol Microbiol 49:55-67
    • (2003) Mol Microbiol , vol.49 , pp. 55-67
    • Roesch, P.L.1    Redford, P.2    Batchelet, S.3
  • 127
    • 80052173621 scopus 로고    scopus 로고
    • Open-source genomic analysis of Shiga-toxin-producing E. Coli O104:H4
    • Rohde H, Qin J, Cui Y et al (2011) Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 365:718-724
    • (2011) N Engl J Med , vol.365 , pp. 718-724
    • Rohde, H.1    Qin, J.2    Cui, Y.3
  • 128
    • 33745245565 scopus 로고    scopus 로고
    • Asymptomatic bacteriuria Escherichia coli strain 83972 carries mutations in the foc locus and is unable to express F1C fimbriae
    • Roos V, Schembri MA, Ulett GC, Klemm P (2006) Asymptomatic bacteriuria Escherichia coli strain 83972 carries mutations in the foc locus and is unable to express F1C fimbriae. Microbiology 152:1799-1806
    • (2006) Microbiology , vol.152 , pp. 1799-1806
    • Roos, V.1    Schembri, M.A.2    Ulett, G.C.3    Klemm, P.4
  • 129
    • 67649388225 scopus 로고    scopus 로고
    • A metabolic operon in extraintestinal pathogenic Escherichia coli promotes fitness under stressful conditions and invasion of eukaryotic cells
    • Rouquet G, Porcheron G, Barra C et al (2009) A metabolic operon in extraintestinal pathogenic Escherichia coli promotes fitness under stressful conditions and invasion of eukaryotic cells. J Bacteriol 191:4427-4440
    • (2009) J Bacteriol , vol.191 , pp. 4427-4440
    • Rouquet, G.1    Porcheron, G.2    Barra, C.3
  • 130
    • 79955393291 scopus 로고    scopus 로고
    • Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7
    • Rump LV, Strain EA, Cao G et al (2011) Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7. J Bacteriol 193:2058-2059
    • (2011) J Bacteriol , vol.193 , pp. 2058-2059
    • Rump, L.V.1    Strain, E.A.2    Cao, G.3
  • 131
    • 33746655816 scopus 로고    scopus 로고
    • Pathogenicity island markers in commensal and uropathogenic Escherichia coli isolates
    • Sabaté M, Moreno E, Perez T, Andreu A, Prats G (2006) Pathogenicity island markers in commensal and uropathogenic Escherichia coli isolates. Clin Microbiol Infect 12:880-886
    • (2006) Clin Microbiol Infect , vol.12 , pp. 880-886
    • Sabaté, M.1    Moreno, E.2    Perez, T.3    Andreu, A.4    Prats, G.5
  • 132
    • 79251525497 scopus 로고    scopus 로고
    • A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation
    • Sahl JW, Steinsland H, Redman JC et al (2011) A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infect Immun 79:950-960
    • (2011) Infect Immun , vol.79 , pp. 950-960
    • Sahl, J.W.1    Steinsland, H.2    Redman, J.C.3
  • 133
    • 84863743712 scopus 로고    scopus 로고
    • Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignments
    • Sahl JW, Matalka MN, Rasko DA (2012) Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignments. Appl Environ Microbiol 78:4884-4892
    • (2012) Appl Environ Microbiol , vol.78 , pp. 4884-4892
    • Sahl, J.W.1    Matalka, M.N.2    Rasko, D.A.3
  • 134
    • 84857165872 scopus 로고    scopus 로고
    • Comparison of asymptomatic bacteriuria Escherichia coli isolates from healthy individuals versus those from hospital patients shows that long-term bladder colonization selects for attenuated virulence phenotypes
    • Salvador E, Wagenlehner F, Köhler CD et al (2012) Comparison of asymptomatic bacteriuria Escherichia coli isolates from healthy individuals versus those from hospital patients shows that long-term bladder colonization selects for attenuated virulence phenotypes. Infect Immun 80:668-678
    • (2012) Infect Immun , vol.80 , pp. 668-678
    • Salvador, E.1    Wagenlehner, F.2    Köhler, C.D.3
  • 135
    • 44849122893 scopus 로고    scopus 로고
    • ExPEC-typical virulence-associated genes correlate with successful colonization by intestinal E. Coli in a small piglet group
    • Schierack P, Walk N, Ewers C et al (2008) ExPEC-typical virulence-associated genes correlate with successful colonization by intestinal E. coli in a small piglet group. Environ Microbiol 10:1742-1751
    • (2008) Environ Microbiol , vol.10 , pp. 1742-1751
    • Schierack, P.1    Walk, N.2    Ewers, C.3
  • 136
    • 79951907967 scopus 로고    scopus 로고
    • E. Coli Nissle 1917 affects Salmonella adhesion to porcine intestinal epithelial cells
    • e14712
    • Schierack P, Kleta S, Tedin K et al. (2011) E. coli Nissle 1917 affects Salmonella adhesion to porcine intestinal epithelial cells. PLoS One 6:e14712
    • (2011) PLoS One , vol.6
    • Schierack, P.1    Kleta, S.2    Tedin, K.3
  • 137
    • 34248399194 scopus 로고    scopus 로고
    • Induction of human beta-defensin 2 by the probiotic Escherichia coli Nissle 1917 is mediated through flagellin
    • Schlee M, Wehkamp J, Altenhoefer A, Oelschlaeger TA, Stange EF, Fellermann K (2007) Induction of human beta-defensin 2 by the probiotic Escherichia coli Nissle 1917 is mediated through flagellin. Infect Immun 75:2399-2407
    • (2007) Infect Immun , vol.75 , pp. 2399-2407
    • Schlee, M.1    Wehkamp, J.2    Altenhoefer, A.3    Oelschlaeger, T.A.4    Stange, E.F.5    Fellermann, K.6
  • 138
    • 80053174191 scopus 로고    scopus 로고
    • Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitro support the role of conjugation for horizontal transfer of genomic islands
    • Schneider G, Dobrindt U, Middendorf B et al (2011) Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitro support the role of conjugation for horizontal transfer of genomic islands. BMC Microbiol 11:210
    • (2011) BMC Microbiol , vol.11 , pp. 210
    • Schneider, G.1    Dobrindt, U.2    Middendorf, B.3
  • 139
    • 58149521994 scopus 로고    scopus 로고
    • A genomic island of an extraintestinal pathogenic Escherichia coli Strain enables the metabolism of fructooligosaccharides, which improves intestinal colonization
    • Schouler C, Taki A, Chouikha I, Moulin-Schouleur M, Gilot P (2009) A genomic island of an extraintestinal pathogenic Escherichia coli Strain enables the metabolism of fructooligosaccharides, which improves intestinal colonization. J Bacteriol 191:388-393
    • (2009) J Bacteriol , vol.191 , pp. 388-393
    • Schouler, C.1    Taki, A.2    Chouikha, I.3    Moulin-Schouleur, M.4    Gilot, P.5
  • 140
    • 59249100632 scopus 로고    scopus 로고
    • Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species
    • e1000257
    • Schubert S, Darlu P, Clermont O et al (2009) Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species. PLoS Pathog 5:e1000257
    • (2009) PLoS Pathog , vol.5
    • Schubert, S.1    Darlu, P.2    Clermont, O.3
  • 141
    • 47949120118 scopus 로고    scopus 로고
    • Clinical use of E. Coli Nissle 1917 in inflammatory bowel disease
    • Schultz M (2008) Clinical use of E. coli Nissle 1917 in inflammatory bowel disease. Inflamm Bowel Dis 14:1012-1018
    • (2008) Inflamm Bowel Dis , vol.14 , pp. 1012-1018
    • Schultz, M.1
  • 142
    • 44349150421 scopus 로고    scopus 로고
    • Flagella allow uropathogenic Escherichia coli ascension into murine kidneys
    • Schwan WR (2008) Flagella allow uropathogenic Escherichia coli ascension into murine kidneys. Int J Med Microbiol 298:441-447
    • (2008) Int J Med Microbiol , vol.298 , pp. 441-447
    • Schwan, W.R.1
  • 143
    • 0002878207 scopus 로고
    • Further observations on the persistence of individual strains of Escherichia coli in the intestinal tract of man
    • Sears HJ, Brownlee I (1952) Further observations on the persistence of individual strains of Escherichia coli in the intestinal tract of man. J Bacteriol 63:47-57
    • (1952) J Bacteriol , vol.63 , pp. 47-57
    • Sears, H.J.1    Brownlee, I.2
  • 144
    • 76549258832 scopus 로고
    • Persistence of individual strains of Escherichia coli in the intestinal tract of man
    • Sears HJ, Brownlee I, Uchiyama JK (1950) Persistence of individual strains of Escherichia coli in the intestinal tract of man. J Bacteriol 59:293-301
    • (1950) J Bacteriol , vol.59 , pp. 293-301
    • Sears, H.J.1    Brownlee, I.2    Uchiyama, J.K.3
  • 145
    • 84855874471 scopus 로고    scopus 로고
    • Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli
    • Shepard SM, Danzeisen JL, Isaacson RE, Seemann T, Achtman M, Johnson TJ (2012) Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. J Bacteriol 194:395-405
    • (2012) J Bacteriol , vol.194 , pp. 395-405
    • Shepard, S.M.1    Danzeisen, J.L.2    Isaacson, R.E.3    Seemann, T.4    Achtman, M.5    Johnson, T.J.6
  • 146
    • 79957787637 scopus 로고    scopus 로고
    • Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
    • Sims GE, Kim SH (2011) Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proc Natl Acad Sci USA 108:8329-8334
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 8329-8334
    • Sims, G.E.1    Kim, S.H.2
  • 147
    • 78149439513 scopus 로고    scopus 로고
    • Bacteriocin synthesis in uropathogenic and commensal Escherichia coli: Colicin E1 is a potential virulence factor
    • Smajs D, Micenkova L, Smarda J et al (2010) Bacteriocin synthesis in uropathogenic and commensal Escherichia coli: colicin E1 is a potential virulence factor. BMC Microbiol 10:288
    • (2010) BMC Microbiol , vol.10 , pp. 288
    • Smajs, D.1    Micenkova, L.2    Smarda, J.3
  • 149
    • 70350443429 scopus 로고    scopus 로고
    • Comparative structure-function analysis of mannose-specific FimH adhesins from Klebsiella pneumoniae and Escherichia coli
    • Stahlhut SG, Tchesnokova V, Struve C et al (2009) Comparative structure-function analysis of mannose-specific FimH adhesins from Klebsiella pneumoniae and Escherichia coli. J Bacteriol 191:6592-6601
    • (2009) J Bacteriol , vol.191 , pp. 6592-6601
    • Stahlhut, S.G.1    Tchesnokova, V.2    Struve, C.3
  • 150
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 151
    • 57149096433 scopus 로고    scopus 로고
    • Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures
    • Stamatakis A, Ott M (2008) Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures. Philos Trans R Soc Lond B Biol Sci 363:3977-3984
    • (2008) Philos Trans R Soc Lond B Biol Sci , vol.363 , pp. 3977-3984
    • Stamatakis, A.1    Ott, M.2
  • 152
    • 34547141772 scopus 로고    scopus 로고
    • Grazing protozoa and the evolution of the Escherichia coli O157:H7 Shiga toxin-encoding prophage
    • Steinberg KM, Levin BR (2007) Grazing protozoa and the evolution of the Escherichia coli O157:H7 Shiga toxin-encoding prophage. Proc Biol Sci 274:1921-1929
    • (2007) Proc Biol Sci , vol.274 , pp. 1921-1929
    • Steinberg, K.M.1    Levin, B.R.2
  • 154
    • 80052709092 scopus 로고    scopus 로고
    • In vitro analysis of the bactericidal activity of Escherichia coli Nissle 1917 against pediatric uropathogens
    • Storm DW, Koff SA, Horvath DJ Jr, Li B, Justice SS (2011) In vitro analysis of the bactericidal activity of Escherichia coli Nissle 1917 against pediatric uropathogens. J Urol 186:1678-1683
    • (2011) J Urol , vol.186 , pp. 1678-1683
    • Storm, D.W.1    Koff, S.A.2    Horvath Jr., D.J.3    Li, B.4    Justice, S.S.5
  • 155
    • 77953123716 scopus 로고    scopus 로고
    • Escherichia coli 83972 bacteriuria protects against recurrent lower urinary tract infections in patients with incomplete bladder emptying
    • Sundén F, Håkansson L, Ljunggren E, Wullt B (2010) Escherichia coli 83972 bacteriuria protects against recurrent lower urinary tract infections in patients with incomplete bladder emptying. J Urol 184:179-185
    • (2010) J Urol , vol.184 , pp. 179-185
    • Sundén, F.1    Håkansson, L.2    Ljunggren, E.3    Wullt, B.4
  • 157
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome"
    • Tettelin H, Masignani V, Cieslewicz MJ et al (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci USA 102:13950-13955
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3
  • 159
    • 75749094779 scopus 로고    scopus 로고
    • Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2
    • Toh H, Oshima K, Toyoda A et al (2010) Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2. J Bacteriol 192:1165-1166
    • (2010) J Bacteriol , vol.192 , pp. 1165-1166
    • Toh, H.1    Oshima, K.2    Toyoda, A.3
  • 160
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • e1000344
    • Touchon M, Hoede C, Tenaillon O et al (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5:e1000344
    • (2009) PLoS Genet , vol.5
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3
  • 161
    • 0034621828 scopus 로고    scopus 로고
    • Alpha-haemolysin of uropathogenic E. Coli induces Ca2+ oscillations in renal epithelial cells
    • Uhlén P, Laestadius A, Jahnukainen T et al (2000) Alpha-haemolysin of uropathogenic E. coli induces Ca2+ oscillations in renal epithelial cells. Nature 405:694-697
    • (2000) Nature , vol.405 , pp. 694-697
    • Uhlén, P.1    Laestadius, A.2    Jahnukainen, T.3
  • 162
    • 29244460995 scopus 로고    scopus 로고
    • The host response to the probiotic Escherichia coli strain Nissle 1917: Specific up-regulation of the proinflammatory chemokine MCP-1
    • Ukena SN, Westendorf AM, Hansen W et al (2005) The host response to the probiotic Escherichia coli strain Nissle 1917: specific up-regulation of the proinflammatory chemokine MCP-1. BMC Med Genet 6:43
    • (2005) BMC Med Genet , vol.6 , pp. 43
    • Ukena, S.N.1    Westendorf, A.M.2    Hansen, W.3
  • 163
    • 44949153787 scopus 로고    scopus 로고
    • Probiotic Escherichia coli Nissle 1917 inhibits leaky gut by enhancing mucosal integrity
    • e1308
    • Ukena SN, Singh A, Dringenberg U et al (2007) Probiotic Escherichia coli Nissle 1917 inhibits leaky gut by enhancing mucosal integrity. PLoS One 2:e1308
    • (2007) PLoS One , vol.2
    • Ukena, S.N.1    Singh, A.2    Dringenberg, U.3
  • 164
    • 77951629208 scopus 로고    scopus 로고
    • A virulent parent with probiotic progeny: Comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972
    • Vejborg RM, Friis C, Hancock V, Schembri MA, Klemm P (2010) A virulent parent with probiotic progeny: comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972. Mol Genet Genomics 283:469-484
    • (2010) Mol Genet Genomics , vol.283 , pp. 469-484
    • Vejborg, R.M.1    Friis, C.2    Hancock, V.3    Schembri, M.A.4    Klemm, P.5
  • 165
    • 79952393752 scopus 로고    scopus 로고
    • Core and panmetabolism in Escherichia coli
    • Vieira G, Sabarly V, Bourguignon PY et al (2011) Core and panmetabolism in Escherichia coli. J Bacteriol 193:1461-1472
    • (2011) J Bacteriol , vol.193 , pp. 1461-1472
    • Vieira, G.1    Sabarly, V.2    Bourguignon, P.Y.3
  • 166
  • 168
    • 33750436609 scopus 로고    scopus 로고
    • Impact of biofilm matrix components on interaction of commensal Escherichia coli with the gastrointestinal cell line HT-29
    • Wang X, Rochon M, Lamprokostopoulou A, Lunsdorf H, Nimtz M, Römling U (2006) Impact of biofilm matrix components on interaction of commensal Escherichia coli with the gastrointestinal cell line HT-29. Cell Mol Life Sci 63:2352-2363
    • (2006) Cell Mol Life Sci , vol.63 , pp. 2352-2363
    • Wang, X.1    Rochon, M.2    Lamprokostopoulou, A.3    Lunsdorf, H.4    Nimtz, M.5    Römling, U.6
  • 169
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • Welch RA, Burland V, Plunkett G 3rd et al (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc Natl Acad Sci USA 99:17020-17024
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 17020-17024
    • Welch, R.A.1    Burland, V.2    Plunkett III, G.3
  • 170
    • 0027255691 scopus 로고
    • Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea
    • Whittam TS, Wolfe ML, Wachsmuth IK, Ørskov F, Ørskov I, Wilson RA (1993) Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea. Infect Immun 61:1619-1629
    • (1993) Infect Immun , vol.61 , pp. 1619-1629
    • Whittam, T.S.1    Wolfe, M.L.2    Wachsmuth, I.K.3    Ørskov, F.4    Ørskov, I.5    Wilson, R.A.6
  • 171
    • 79960961566 scopus 로고    scopus 로고
    • Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
    • Wiedenbeck J, Cohan FM (2011) Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev 35:957-976
    • (2011) FEMS Microbiol Rev , vol.35 , pp. 957-976
    • Wiedenbeck, J.1    Cohan, F.M.2
  • 172
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, Falush D, Lan R et al (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60:1136-1151
    • (2006) Mol Microbiol , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3
  • 173
    • 0026542972 scopus 로고
    • Resident colonic Escherichia coli strains frequently display uropathogenic characteristics
    • Wold AE, Caugant DA, Lidin-Janson G, de Man P, Svanborg C (1992) Resident colonic Escherichia coli strains frequently display uropathogenic characteristics. J Infect Dis 165:46-52
    • (1992) J Infect Dis , vol.165 , pp. 46-52
    • Wold, A.E.1    Caugant, D.A.2    Lidin-Janson, G.3    De Man, P.4    Svanborg, C.5
  • 174
    • 39149129083 scopus 로고    scopus 로고
    • Molecular basis of commensalism in the urinary tract: Low virulence or virulence attenuation?
    • Zdziarski J, Svanborg C, Wullt B, Hacker J, Dobrindt U (2008) Molecular basis of commensalism in the urinary tract: low virulence or virulence attenuation? Infect Immun 76:695-703
    • (2008) Infect Immun , vol.76 , pp. 695-703
    • Zdziarski, J.1    Svanborg, C.2    Wullt, B.3    Hacker, J.4    Dobrindt, U.5
  • 175
    • 77958120655 scopus 로고    scopus 로고
    • Host imprints on bacterial genomes - Rapid, divergent evolution in individual patients
    • e1001078
    • Zdziarski J, Brzuszkiewicz E, Wullt B et al (2010) Host imprints on bacterial genomes - rapid, divergent evolution in individual patients. PLoS Pathog 6:e1001078
    • (2010) PLoS Pathog , vol.6
    • Zdziarski, J.1    Brzuszkiewicz, E.2    Wullt, B.3
  • 176
    • 77649261066 scopus 로고    scopus 로고
    • Derivation of Escherichia coli O157:H7 from its O55:H7 precursor
    • e8700
    • Zhou Z, Li X, Liu B et al (2010) Derivation of Escherichia coli O157:H7 from its O55:H7 precursor. PLoS One 5:e8700
    • (2010) PLoS One , vol.5
    • Zhou, Z.1    Li, X.2    Liu, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.