-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, et al (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
2
-
-
56449104265
-
Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors
-
Anglesio MS, Arnold JM, George J, Tinker AV, Tothill R, Waddell N, Simms L, Locandro B, Fereday S, Traficante N, et al (2008) Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors. Mol Cancer Res 6: 1678-1690
-
(2008)
Mol Cancer Res
, vol.6
, pp. 1678-1690
-
-
Anglesio, M.S.1
Arnold, J.M.2
George, J.3
Tinker, A.V.4
Tothill, R.5
Waddell, N.6
Simms, L.7
Locandro, B.8
Fereday, S.9
Traficante, N.10
-
3
-
-
30044438368
-
Intraperitoneal cisplatin and paclitaxel in ovarian cancer
-
Armstrong DK, Bundy B, Wenzel L, Huang HQ, Baergen R, Lele S, Copeland LJ, Walker JL, Burger RA (2006) Intraperitoneal cisplatin and paclitaxel in ovarian cancer. N Engl J Med 354: 34-43
-
(2006)
N Engl J Med
, vol.354
, pp. 34-43
-
-
Armstrong, D.K.1
Bundy, B.2
Wenzel, L.3
Huang, H.Q.4
Baergen, R.5
Lele, S.6
Copeland, L.J.7
Walker, J.L.8
Burger, R.A.9
-
4
-
-
70449091786
-
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
-
Barbie DA, Tamayo P, Boehm JS, Kim SY, Moody SE, Dunn IF, Schinzel AC, Sandy P, Meylan E, Scholl C, et al (2009) Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1. Nature 462: 108-112
-
(2009)
Nature
, vol.462
, pp. 108-112
-
-
Barbie, D.A.1
Tamayo, P.2
Boehm, J.S.3
Kim, S.Y.4
Moody, S.E.5
Dunn, I.F.6
Schinzel, A.C.7
Sandy, P.8
Meylan, E.9
Scholl, C.10
-
5
-
-
67649440886
-
The biology of ovarian cancer: new opportunities for translation
-
Bast RC Jr, Hennessy B, Mills GB (2009) The biology of ovarian cancer: new opportunities for translation. Nat Rev Cancer 9: 415-428
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 415-428
-
-
Bast Jr, R.C.1
Hennessy, B.2
Mills, G.B.3
-
6
-
-
31144459985
-
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
-
Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, Joshi MB, Harpole D, Lancaster JM, Berchuck A, et al (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439: 353-357
-
(2006)
Nature
, vol.439
, pp. 353-357
-
-
Bild, A.H.1
Yao, G.2
Chang, J.T.3
Wang, Q.4
Potti, A.5
Chasse, D.6
Joshi, M.B.7
Harpole, D.8
Lancaster, J.M.9
Berchuck, A.10
-
7
-
-
0033280893
-
Beating the hold-out: bounds for K-fold and progressive cross-validation
-
Santa Cruz, California, USA: ACM
-
Blum A, Kalai A, Langford J (1999) Beating the hold-out: bounds for K-fold and progressive cross-validation. In Proceedings of the twelfth annual conference on Computational learning theory pp 203-208. Santa Cruz, California, USA: ACM
-
(1999)
Proceedings of the twelfth annual conference on Computational learning theory
, pp. 203-208
-
-
Blum, A.1
Kalai, A.2
Langford, J.3
-
8
-
-
74849123453
-
Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells
-
Bowen NJ, Walker LD, Matyunina LV, Logani S, Totten KA, Benigno BB, McDonald JF (2009) Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells. BMC Med Genomics 2: 71
-
(2009)
BMC Med Genomics
, vol.2
, pp. 71
-
-
Bowen, N.J.1
Walker, L.D.2
Matyunina, L.V.3
Logani, S.4
Totten, K.A.5
Benigno, B.B.6
McDonald, J.F.7
-
9
-
-
84872853140
-
Global estimates of cancer prevalence for 27 sites in the adult population in 2008
-
Bray F, Ren JS, Masuyer E, Ferlay J (2013) Global estimates of cancer prevalence for 27 sites in the adult population in 2008. Int J Cancer 132: 1133-1145
-
(2013)
Int J Cancer
, vol.132
, pp. 1133-1145
-
-
Bray, F.1
Ren, J.S.2
Masuyer, E.3
Ferlay, J.4
-
10
-
-
33745948105
-
Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients
-
Calza S, Hall P, Auer G, Bjohle J, Klaar S, Kronenwett U, Liu ET, Miller L, Ploner A, Smeds J, et al (2006) Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients. Breast Cancer Res 8: R34
-
(2006)
Breast Cancer Res
, vol.8
-
-
Calza, S.1
Hall, P.2
Auer, G.3
Bjohle, J.4
Klaar, S.5
Kronenwett, U.6
Liu, E.T.7
Miller, L.8
Ploner, A.9
Smeds, J.10
-
11
-
-
79952230540
-
Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods
-
Chen C, Grennan K, Badner J, Zhang D, Gershon E, Jin L, Liu C (2011) Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods. PloS ONE 6: e17238
-
(2011)
PloS ONE
, vol.6
-
-
Chen, C.1
Grennan, K.2
Badner, J.3
Zhang, D.4
Gershon, E.5
Jin, L.6
Liu, C.7
-
12
-
-
79961062492
-
Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer
-
Cheung HW, Cowley GS, Weir BA, Boehm JS, Rusin S, Scott JA, East A, Ali LD, Lizotte PH, Wong TC, et al (2011) Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer. Proc Natl Acad Sci USA 108: 12372-12377
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 12372-12377
-
-
Cheung, H.W.1
Cowley, G.S.2
Weir, B.A.3
Boehm, J.S.4
Rusin, S.5
Scott, J.A.6
East, A.7
Ali, L.D.8
Lizotte, P.H.9
Wong, T.C.10
-
15
-
-
30344451406
-
ClaNC: point-and-click software for classifying microarrays to nearest centroids
-
Dabney AR (2006) ClaNC: point-and-click software for classifying microarrays to nearest centroids. Bioinformatics 22: 122-123
-
(2006)
Bioinformatics
, vol.22
, pp. 122-123
-
-
Dabney, A.R.1
-
16
-
-
66849097914
-
A prognostic gene expression index in ovarian cancer - validation across different independent data sets
-
Denkert C, Budczies J, Darb-Esfahani S, Gyorffy B, Sehouli J, Konsgen D, Zeillinger R, Weichert W, Noske A, Buckendahl AC, et al (2009) A prognostic gene expression index in ovarian cancer - validation across different independent data sets. J Pathol 218: 273-280
-
(2009)
J Pathol
, vol.218
, pp. 273-280
-
-
Denkert, C.1
Budczies, J.2
Darb-Esfahani, S.3
Gyorffy, B.4
Sehouli, J.5
Konsgen, D.6
Zeillinger, R.7
Weichert, W.8
Noske, A.9
Buckendahl, A.C.10
-
18
-
-
0033571285
-
Human 76p: a new member of the gamma-tubulin-associated protein family
-
Fava F, Raynaud-Messina B, Leung-Tack J, Mazzolini L, Li M, Guillemot JC, Cachot D, Tollon Y, Ferrara P, Wright M (1999) Human 76p: a new member of the gamma-tubulin-associated protein family. J Cell Biol 147: 857-868
-
(1999)
J Cell Biol
, vol.147
, pp. 857-868
-
-
Fava, F.1
Raynaud-Messina, B.2
Leung-Tack, J.3
Mazzolini, L.4
Li, M.5
Guillemot, J.C.6
Cachot, D.7
Tollon, Y.8
Ferrara, P.9
Wright, M.10
-
19
-
-
0030770196
-
Empowering research: statistical power in general practice research
-
Fox N, Mathers N (1997) Empowering research: statistical power in general practice research. Family Pract 14: 324-329
-
(1997)
Family Pract
, vol.14
, pp. 324-329
-
-
Fox, N.1
Mathers, N.2
-
20
-
-
77951083686
-
A pathway-based classification of human breast cancer
-
Gatza ML, Lucas JE, Barry WT, Kim JW, Wang Q, Crawford MD, Datto MB, Kelley M, Mathey-Prevot B, Potti A, et al (2010) A pathway-based classification of human breast cancer. Proc Natl Acad Sci USA 107: 6994-6999
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 6994-6999
-
-
Gatza, M.L.1
Lucas, J.E.2
Barry, W.T.3
Kim, J.W.4
Wang, Q.5
Crawford, M.D.6
Datto, M.B.7
Kelley, M.8
Mathey-Prevot, B.9
Potti, A.10
-
22
-
-
0030008083
-
Reducing patient eligibility criteria in cancer clinical trials
-
George SL (1996) Reducing patient eligibility criteria in cancer clinical trials. J Clin Oncol 14: 1364-1370
-
(1996)
J Clin Oncol
, vol.14
, pp. 1364-1370
-
-
George, S.L.1
-
23
-
-
68349155807
-
Ovarian carcinoma pathology and genetics: recent advances
-
Gilks CB, Prat J (2009) Ovarian carcinoma pathology and genetics: recent advances. Hum Pathol 40: 1213-1223
-
(2009)
Hum Pathol
, vol.40
, pp. 1213-1223
-
-
Gilks, C.B.1
Prat, J.2
-
24
-
-
84857540547
-
A three-gene model to robustly identify breast cancer molecular subtypes
-
Haibe-Kains B, Desmedt C, Loi S, Culhane AC, Bontempi G, Quackenbush J, Sotiriou C (2012) A three-gene model to robustly identify breast cancer molecular subtypes. J Natl Cancer Inst 104: 311-325
-
(2012)
J Natl Cancer Inst
, vol.104
, pp. 311-325
-
-
Haibe-Kains, B.1
Desmedt, C.2
Loi, S.3
Culhane, A.C.4
Bontempi, G.5
Quackenbush, J.6
Sotiriou, C.7
-
25
-
-
79954618976
-
Deregulation of MYCN, LIN28B and LET7 in a molecular subtype of aggressive high-grade serous ovarian cancers
-
Helland A, Anglesio MS, George J, Cowin PA, Johnstone CN, House CM, Sheppard KE, Etemadmoghadam D, Melnyk N, Rustgi AK, et al (2011) Deregulation of MYCN, LIN28B and LET7 in a molecular subtype of aggressive high-grade serous ovarian cancers. PLoS ONE 6: e18064
-
(2011)
PLoS ONE
, vol.6
-
-
Helland, A.1
Anglesio, M.S.2
George, J.3
Cowin, P.A.4
Johnstone, C.N.5
House, C.M.6
Sheppard, K.E.7
Etemadmoghadam, D.8
Melnyk, N.9
Rustgi, A.K.10
-
26
-
-
32944462571
-
Fibroblast growth factor 9 has oncogenic activity and is a downstream target of Wnt signaling in ovarian endometrioid adenocarcinomas
-
Hendrix ND, Wu R, Kuick R, Schwartz DR, Fearon ER, Cho KR (2006) Fibroblast growth factor 9 has oncogenic activity and is a downstream target of Wnt signaling in ovarian endometrioid adenocarcinomas. Cancer Res 66: 1354-11362
-
(2006)
Cancer Res
, vol.66
, pp. 1354-11362
-
-
Hendrix, N.D.1
Wu, R.2
Kuick, R.3
Schwartz, D.R.4
Fearon, E.R.5
Cho, K.R.6
-
27
-
-
0038340769
-
Distribution of HER-2 overexpression in ovarian carcinoma tissue and its prognostic value in patients with ovarian carcinoma: from the Danish MALOVA Ovarian Cancer Study
-
Hogdall EV, Christensen L, Kjaer SK, Blaakaer J, Bock JE, Glud E, Norgaard-Pedersen B, Hogdall CK (2003) Distribution of HER-2 overexpression in ovarian carcinoma tissue and its prognostic value in patients with ovarian carcinoma: from the Danish MALOVA Ovarian Cancer Study. Cancer 98: 66-73
-
(2003)
Cancer
, vol.98
, pp. 66-73
-
-
Hogdall, E.V.1
Christensen, L.2
Kjaer, S.K.3
Blaakaer, J.4
Bock, J.E.5
Glud, E.6
Norgaard-Pedersen, B.7
Hogdall, C.K.8
-
28
-
-
84873081621
-
Advances in the treatment of luminal breast cancer
-
Howell SJ (2013) Advances in the treatment of luminal breast cancer. Curr Opin Obstet Gynecol 25: 49-54
-
(2013)
Curr Opin Obstet Gynecol
, vol.25
, pp. 49-54
-
-
Howell, S.J.1
-
29
-
-
35348860753
-
Pharmacogenomic strategies provide a rational approach to the treatment of cisplatin-resistant patients with advanced cancer
-
Hsu DS, Balakumaran BS, Acharya CR, Vlahovic V, Walters KS, Garman K, Anders C, Riedel RF, Lancaster J, Harpole D, et al (2007) Pharmacogenomic strategies provide a rational approach to the treatment of cisplatin-resistant patients with advanced cancer. J Clin Oncol 25: 4350-4357
-
(2007)
J Clin Oncol
, vol.25
, pp. 4350-4357
-
-
Hsu, D.S.1
Balakumaran, B.S.2
Acharya, C.R.3
Vlahovic, V.4
Walters, K.S.5
Garman, K.6
Anders, C.7
Riedel, R.F.8
Lancaster, J.9
Harpole, D.10
-
30
-
-
47049103846
-
Lysophosphatidic acid induces ovarian cancer cell dispersal by activating Fyn kinase associated with p120-catenin
-
Huang RY, Wang SM, Hsieh CY, Wu JC (2008) Lysophosphatidic acid induces ovarian cancer cell dispersal by activating Fyn kinase associated with p120-catenin. Int J Cancer 123: 801-809
-
(2008)
Int J Cancer
, vol.123
, pp. 801-809
-
-
Huang, R.Y.1
Wang, S.M.2
Hsieh, C.Y.3
Wu, J.C.4
-
31
-
-
0037161744
-
HDAC6 is a microtubule-associated deacetylase
-
Hubbert C, Guardiola A, Shao R, Kawaguchi Y, Ito A, Nixon A, Yoshida M, Wang XF, Yao TP (2002) HDAC6 is a microtubule-associated deacetylase. Nature 417: 455-458
-
(2002)
Nature
, vol.417
, pp. 455-458
-
-
Hubbert, C.1
Guardiola, A.2
Shao, R.3
Kawaguchi, Y.4
Ito, A.5
Nixon, A.6
Yoshida, M.7
Wang, X.F.8
Yao, T.P.9
-
32
-
-
77950279249
-
Activation of phosphatidylcholine cycle enzymes in human epithelial ovarian cancer cells
-
Iorio E, Ricci A, Bagnoli M, Pisanu ME, Castellano G, Di Vito M, Venturini E, Glunde K, Bhujwalla ZM, Mezzanzanica D, et al (2010) Activation of phosphatidylcholine cycle enzymes in human epithelial ovarian cancer cells. Cancer Res 70: 2126-2135
-
(2010)
Cancer Res
, vol.70
, pp. 2126-2135
-
-
Iorio, E.1
Ricci, A.2
Bagnoli, M.3
Pisanu, M.E.4
Castellano, G.5
Di Vito, M.6
Venturini, E.7
Glunde, K.8
Bhujwalla, Z.M.9
Mezzanzanica, D.10
-
33
-
-
34548694763
-
Gene expression in epithelial ovarian cancer: a study of intratumor heterogeneity
-
Jochumsen KM, Tan Q, Holund B, Kruse TA, Mogensen O (2007) Gene expression in epithelial ovarian cancer: a study of intratumor heterogeneity. Int J Gynecol Cancer 17: 979-985
-
(2007)
Int J Gynecol Cancer
, vol.17
, pp. 979-985
-
-
Jochumsen, K.M.1
Tan, Q.2
Holund, B.3
Kruse, T.A.4
Mogensen, O.5
-
34
-
-
73449089836
-
Gene expression profiles as prognostic markers in women with ovarian cancer
-
Jochumsen KM, Tan Q, Hogdall EV, Hogdall C, Kjaer SK, Blaakaer J, Kruse TA, Mogensen O (2009) Gene expression profiles as prognostic markers in women with ovarian cancer. Int J Gynecol Cancer 19: 1205-1213
-
(2009)
Int J Gynecol Cancer
, vol.19
, pp. 1205-1213
-
-
Jochumsen, K.M.1
Tan, Q.2
Hogdall, E.V.3
Hogdall, C.4
Kjaer, S.K.5
Blaakaer, J.6
Kruse, T.A.7
Mogensen, O.8
-
35
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
Johnson WE, Li C, Rabinovic A (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8: 118-127
-
(2007)
Biostatistics
, vol.8
, pp. 118-127
-
-
Johnson, W.E.1
Li, C.2
Rabinovic, A.3
-
36
-
-
65749119811
-
Estimating classification error rate: Repeated cross-validation, repeated hold-out and bootstrap
-
Kim J-H (2009) Estimating classification error rate: Repeated cross-validation, repeated hold-out and bootstrap. Comput Stat Data Anal 53: 3735-3745
-
(2009)
Comput Stat Data Anal
, vol.53
, pp. 3735-3745
-
-
Kim, J.-H.1
-
37
-
-
79957979681
-
The anterior gradient homolog 3 (AGR3) gene is associated with differentiation and survival in ovarian cancer
-
King ER, Tung CS, Tsang YT, Zu Z, Lok GT, Deavers MT, Malpica A, Wolf JK, Lu KH, Birrer MJ, et al (2011) The anterior gradient homolog 3 (AGR3) gene is associated with differentiation and survival in ovarian cancer. Am J Surg Pathol 35: 904-912
-
(2011)
Am J Surg Pathol
, vol.35
, pp. 904-912
-
-
King, E.R.1
Tung, C.S.2
Tsang, Y.T.3
Zu, Z.4
Lok, G.T.5
Deavers, M.T.6
Malpica, A.7
Wolf, J.K.8
Lu, K.H.9
Birrer, M.J.10
-
38
-
-
85164392958
-
A study of cross-validation and bootstrap for accuracy estimation and model selection
-
In 14th International Joint Conference on Artificial intelligence
-
Konavi R (1995) A study of cross-validation and bootstrap for accuracy estimation and model selection. In 14th International Joint Conference on Artificial intelligence pp 1137-1143
-
(1995)
, pp. 1137-1143
-
-
Konavi, R.1
-
39
-
-
77955894453
-
Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer
-
Konstantinopoulos PA, Spentzos D, Karlan BY, Taniguchi T, Fountzilas E, Francoeur N, Levine DA, Cannistra SA (2010) Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer. J Clin Oncol 28: 3555-3561
-
(2010)
J Clin Oncol
, vol.28
, pp. 3555-3561
-
-
Konstantinopoulos, P.A.1
Spentzos, D.2
Karlan, B.Y.3
Taniguchi, T.4
Fountzilas, E.5
Francoeur, N.6
Levine, D.A.7
Cannistra, S.A.8
-
40
-
-
41549100146
-
Cysteine-rich protein 61 and connective tissue growth factor induce deadhesion and anoikis of retinal pericytes
-
Liu H, Yang R, Tinner B, Choudhry A, Schutze N, Chaqour B (2008a) Cysteine-rich protein 61 and connective tissue growth factor induce deadhesion and anoikis of retinal pericytes. Endocrinology 149: 1666-1677
-
(2008)
Endocrinology
, vol.149
, pp. 1666-1677
-
-
Liu, H.1
Yang, R.2
Tinner, B.3
Choudhry, A.4
Schutze, N.5
Chaqour, B.6
-
41
-
-
54949118365
-
Statistical significance of clustering for high-dimension, low-sample size data
-
Liu Y, Hayes DN, Nobel A, Marron JS (2008b) Statistical significance of clustering for high-dimension, low-sample size data. J Am Stat Assoc 103: 1281-1293
-
(2008)
J Am Stat Assoc
, vol.103
, pp. 1281-1293
-
-
Liu, Y.1
Hayes, D.N.2
Nobel, A.3
Marron, J.S.4
-
42
-
-
0030008570
-
Interaction of vinca alkaloids with tubulin: a comparison of vinblastine, vincristine, and vinorelbine
-
Lobert S, Vulevic B, Correia JJ (1996) Interaction of vinca alkaloids with tubulin: a comparison of vinblastine, vincristine, and vinorelbine. Biochemistry 35: 6806-6814
-
(1996)
Biochemistry
, vol.35
, pp. 6806-6814
-
-
Lobert, S.1
Vulevic, B.2
Correia, J.J.3
-
43
-
-
58149521944
-
Highly parallel identification of essential genes in cancer cells
-
Luo B, Cheung HW, Subramanian A, Sharifnia T, Okamoto M, Yang X, Hinkle G, Boehm JS, Beroukhim R, Weir BA, et al (2008) Highly parallel identification of essential genes in cancer cells. Proc Natl Acad Sci USA 105: 20380-20385
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 20380-20385
-
-
Luo, B.1
Cheung, H.W.2
Subramanian, A.3
Sharifnia, T.4
Okamoto, M.5
Yang, X.6
Hinkle, G.7
Boehm, J.S.8
Beroukhim, R.9
Weir, B.A.10
-
44
-
-
0021229643
-
Taxol: an antimitotic agent with a new mechanism of action
-
Manfredi JJ, Horwitz SB (1984) Taxol: an antimitotic agent with a new mechanism of action. Pharmacol Therapeut 25: 83-125
-
(1984)
Pharmacol Therapeut
, vol.25
, pp. 83-125
-
-
Manfredi, J.J.1
Horwitz, S.B.2
-
45
-
-
0033663048
-
Cytoplasmic beta-catenin accumulation as a predictor of hematogenous metastasis in human colorectal cancer
-
Maruyama K, Ochiai A, Akimoto S, Nakamura S, Baba S, Moriya Y, Hirohashi S (2000) Cytoplasmic beta-catenin accumulation as a predictor of hematogenous metastasis in human colorectal cancer. Oncology 59: 302-309
-
(2000)
Oncology
, vol.59
, pp. 302-309
-
-
Maruyama, K.1
Ochiai, A.2
Akimoto, S.3
Nakamura, S.4
Baba, S.5
Moriya, Y.6
Hirohashi, S.7
-
46
-
-
78651515618
-
Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer
-
Matsumura N, Huang Z, Mori S, Baba T, Fujii S, Konishi I, Iversen ES, Berchuck A, Murphy SK (2011) Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer. Genome Res 21: 74-82
-
(2011)
Genome Res
, vol.21
, pp. 74-82
-
-
Matsumura, N.1
Huang, Z.2
Mori, S.3
Baba, T.4
Fujii, S.5
Konishi, I.6
Iversen, E.S.7
Berchuck, A.8
Murphy, S.K.9
-
47
-
-
0030054309
-
Cyclophosphamide and cisplatin compared with paclitaxel and cisplatin in patients with stage III and stage IV ovarian cancer
-
McGuire WP, Hoskins WJ, Brady MF, Kucera PR, Partridge EE, Look KY, Clarke-Pearson DL, Davidson M (1996) Cyclophosphamide and cisplatin compared with paclitaxel and cisplatin in patients with stage III and stage IV ovarian cancer. N Engl J Med 334: 1-6
-
(1996)
N Engl J Med
, vol.334
, pp. 1-6
-
-
McGuire, W.P.1
Hoskins, W.J.2
Brady, M.F.3
Kucera, P.R.4
Partridge, E.E.5
Look, K.Y.6
Clarke-Pearson, D.L.7
Davidson, M.8
-
48
-
-
77952438343
-
A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer
-
Meyniel JP, Cottu PH, Decraene C, Stern MH, Couturier J, Lebigot I, Nicolas A, Weber N, Fourchotte V, Alran S, et al (2010) A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer. BMC Cancer 10: 222
-
(2010)
BMC Cancer
, vol.10
, pp. 222
-
-
Meyniel, J.P.1
Cottu, P.H.2
Decraene, C.3
Stern, M.H.4
Couturier, J.5
Lebigot, I.6
Nicolas, A.7
Weber, N.8
Fourchotte, V.9
Alran, S.10
-
49
-
-
33646033137
-
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
-
Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, et al (2006) A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell 124: 1283-1298
-
(2006)
Cell
, vol.124
, pp. 1283-1298
-
-
Moffat, J.1
Grueneberg, D.A.2
Yang, X.3
Kim, S.Y.4
Kloepfer, A.M.5
Hinkle, G.6
Piqani, B.7
Eisenhaure, T.M.8
Luo, B.9
Grenier, J.K.10
-
50
-
-
70749118578
-
A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2
-
Mok SC, Bonome T, Vathipadiekal V, Bell A, Johnson ME, Wong KK, Park DC, Hao K, Yip DK, Donninger H, et al (2009) A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2. Cancer Cell 16: 521-532
-
(2009)
Cancer Cell
, vol.16
, pp. 521-532
-
-
Mok, S.C.1
Bonome, T.2
Vathipadiekal, V.3
Bell, A.4
Johnson, M.E.5
Wong, K.K.6
Park, D.C.7
Hao, K.8
Yip, D.K.9
Donninger, H.10
-
51
-
-
84873744492
-
Patient reported outcomes of a randomized, placebo-controlled trial of bevacizumab in the front-line treatment of ovarian cancer: a Gynecologic Oncology Group Study
-
Monk BJ, Huang HQ, Burger RA, Mannel RS, Homesley HD, Fowler J, Greer BE, Boente M, Liang SX, Wenzel L (2012) Patient reported outcomes of a randomized, placebo-controlled trial of bevacizumab in the front-line treatment of ovarian cancer: a Gynecologic Oncology Group Study. Gynecol Oncol 128: 573-578
-
(2012)
Gynecol Oncol
, vol.128
, pp. 573-578
-
-
Monk, B.J.1
Huang, H.Q.2
Burger, R.A.3
Mannel, R.S.4
Homesley, H.D.5
Fowler, J.6
Greer, B.E.7
Boente, M.8
Liang, S.X.9
Wenzel, L.10
-
52
-
-
20144382754
-
Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response
-
Monti S, Savage KJ, Kutok JL, Feuerhake F, Kurtin P, Mihm M, Wu B, Pasqualucci L, Neuberg D, Aguiar RC, et al (2005) Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response. Blood 105: 1851-1861
-
(2005)
Blood
, vol.105
, pp. 1851-1861
-
-
Monti, S.1
Savage, K.J.2
Kutok, J.L.3
Feuerhake, F.4
Kurtin, P.5
Mihm, M.6
Wu, B.7
Pasqualucci, L.8
Neuberg, D.9
Aguiar, R.C.10
-
53
-
-
68349125561
-
Anchorage-independent cell growth signature identifies tumors with metastatic potential
-
Mori S, Chang JT, Andrechek ER, Matsumura N, Baba T, Yao G, Kim JW, Gatza M, Murphy S, Nevins JR (2009) Anchorage-independent cell growth signature identifies tumors with metastatic potential. Oncogene 28: 2796-2805
-
(2009)
Oncogene
, vol.28
, pp. 2796-2805
-
-
Mori, S.1
Chang, J.T.2
Andrechek, E.R.3
Matsumura, N.4
Baba, T.5
Yao, G.6
Kim, J.W.7
Gatza, M.8
Murphy, S.9
Nevins, J.R.10
-
54
-
-
0028973450
-
Microtubule nucleation by gamma-tubulin-containing rings in the centrosome
-
Moritz M, Braunfeld MB, Sedat JW, Alberts B, Agard DA (1995) Microtubule nucleation by gamma-tubulin-containing rings in the centrosome. Nature 378: 638-640
-
(1995)
Nature
, vol.378
, pp. 638-640
-
-
Moritz, M.1
Braunfeld, M.B.2
Sedat, J.W.3
Alberts, B.4
Agard, D.A.5
-
55
-
-
0031854868
-
Recruitment of the gamma-tubulin ring complex to Drosophila salt-stripped centrosome scaffolds
-
Moritz M, Zheng Y, Alberts BM, Oegema K (1998) Recruitment of the gamma-tubulin ring complex to Drosophila salt-stripped centrosome scaffolds. J Cell Biol 142: 775-786
-
(1998)
J Cell Biol
, vol.142
, pp. 775-786
-
-
Moritz, M.1
Zheng, Y.2
Alberts, B.M.3
Oegema, K.4
-
56
-
-
33845209913
-
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
-
Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, Fevr T, Clark L, Bayani N, Coppe JP, Tong F, et al (2006) A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell 10: 515-527
-
(2006)
Cancer Cell
, vol.10
, pp. 515-527
-
-
Neve, R.M.1
Chin, K.2
Fridlyand, J.3
Yeh, J.4
Baehner, F.L.5
Fevr, T.6
Clark, L.7
Bayani, N.8
Coppe, J.P.9
Tong, F.10
-
57
-
-
77953375710
-
Expression profiling of the ovarian surface kinome reveals candidate genes for early neoplastic changes
-
Pejovic T, Pande NT, Mori M, Mhawech-Fauceglia P, Harrington C, Mongoue-Tchokote S, Dim D, Andrews C, Beck A, Tarumi Y, et al (2009) Expression profiling of the ovarian surface kinome reveals candidate genes for early neoplastic changes. Transl Oncol 2: 341-349
-
(2009)
Transl Oncol
, vol.2
, pp. 341-349
-
-
Pejovic, T.1
Pande, N.T.2
Mori, M.3
Mhawech-Fauceglia, P.4
Harrington, C.5
Mongoue-Tchokote, S.6
Dim, D.7
Andrews, C.8
Beck, A.9
Tarumi, Y.10
-
58
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, et al (2000) Molecular portraits of human breast tumours. Nature 406: 747-752
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
-
59
-
-
70450193142
-
Imatinib and beyond - exploring the full potential of targeted therapy for CML
-
Quintas-Cardama A, Kantarjian H, Cortes J (2009) Imatinib and beyond - exploring the full potential of targeted therapy for CML. Nat Rev Clin Oncol 6: 535-543
-
(2009)
Nat Rev Clin Oncol
, vol.6
, pp. 535-543
-
-
Quintas-Cardama, A.1
Kantarjian, H.2
Cortes, J.3
-
60
-
-
33646361583
-
GenePattern 2.0
-
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP (2006) GenePattern 2.0. Nat Genet 38: 500-501
-
(2006)
Nat Genet
, vol.38
, pp. 500-501
-
-
Reich, M.1
Liefeld, T.2
Gould, J.3
Lerner, J.4
Tamayo, P.5
Mesirov, J.P.6
-
61
-
-
33747794587
-
Genome-scale loss-of-function screening with a lentiviral RNAi library
-
Root DE, Hacohen N, Hahn WC, Lander ES, Sabatini DM (2006) Genome-scale loss-of-function screening with a lentiviral RNAi library. Nat Methods 3: 715-719
-
(2006)
Nat Methods
, vol.3
, pp. 715-719
-
-
Root, D.E.1
Hacohen, N.2
Hahn, W.C.3
Lander, E.S.4
Sabatini, D.M.5
-
62
-
-
76749137179
-
Epidermal growth factor receptor tyrosine kinase inhibitors as first-line treatment in advanced nonsmall-cell lung cancer
-
Rosell R, Viteri S, Molina MA, Benlloch S, Taron M (2010) Epidermal growth factor receptor tyrosine kinase inhibitors as first-line treatment in advanced nonsmall-cell lung cancer. Curr Opin Oncol 22: 112-120
-
(2010)
Curr Opin Oncol
, vol.22
, pp. 112-120
-
-
Rosell, R.1
Viteri, S.2
Molina, M.A.3
Benlloch, S.4
Taron, M.5
-
63
-
-
65849111219
-
Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells
-
Scholl C, Frohling S, Dunn IF, Schinzel AC, Barbie DA, Kim SY, Silver SJ, Tamayo P, Wadlow RC, Ramaswamy S, et al (2009) Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells. Cell 137: 821-834
-
(2009)
Cell
, vol.137
, pp. 821-834
-
-
Scholl, C.1
Frohling, S.2
Dunn, I.F.3
Schinzel, A.C.4
Barbie, D.A.5
Kim, S.Y.6
Silver, S.J.7
Tamayo, P.8
Wadlow, R.C.9
Ramaswamy, S.10
-
64
-
-
67349282365
-
NAT10, a nucleolar protein, localizes to the midbody and regulates cytokinesis and acetylation of microtubules
-
Shen Q, Zheng X, McNutt MA, Guang L, Sun Y, Wang J, Gong Y, Hou L, Zhang B (2009) NAT10, a nucleolar protein, localizes to the midbody and regulates cytokinesis and acetylation of microtubules. Exp Cell Res 315: 1653-1667
-
(2009)
Exp Cell Res
, vol.315
, pp. 1653-1667
-
-
Shen, Q.1
Zheng, X.2
McNutt, M.A.3
Guang, L.4
Sun, Y.5
Wang, J.6
Gong, Y.7
Hou, L.8
Zhang, B.9
-
65
-
-
80054744229
-
High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing
-
Sims D, Mendes-Pereira AM, Frankum J, Burgess D, Cerone MA, Lombardelli C, Mitsopoulos C, Hakas J, Murugaesu N, Isacke CM, et al (2011) High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing. Genome Biol 12: R104
-
(2011)
Genome Biol
, vol.12
-
-
Sims, D.1
Mendes-Pereira, A.M.2
Frankum, J.3
Burgess, D.4
Cerone, M.A.5
Lombardelli, C.6
Mitsopoulos, C.7
Hakas, J.8
Murugaesu, N.9
Isacke, C.M.10
-
66
-
-
4143066760
-
Gefitinib-sensitizing EGFR mutations in lung cancer activate anti-apoptotic pathways
-
Sordella R, Bell DW, Haber DA, Settleman J (2004) Gefitinib-sensitizing EGFR mutations in lung cancer activate anti-apoptotic pathways. Science 305: 1163-1167
-
(2004)
Science
, vol.305
, pp. 1163-1167
-
-
Sordella, R.1
Bell, D.W.2
Haber, D.A.3
Settleman, J.4
-
67
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, et al (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA 98: 10869-10874
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
van de Rijn, M.9
Jeffrey, S.S.10
-
68
-
-
79951755788
-
An evaluation of resampling methods for assessment of survival risk prediction in high-dimensional settings
-
Subramanian J, Simon R (2011) An evaluation of resampling methods for assessment of survival risk prediction in high-dimensional settings. Stat Med 30: 642-653
-
(2011)
Stat Med
, vol.30
, pp. 642-653
-
-
Subramanian, J.1
Simon, R.2
-
69
-
-
84871720882
-
Detection of human papillomavirus in sinonasal papillomas: systematic review and meta-analysis
-
Syrjanen K, Syrjanen S (2013) Detection of human papillomavirus in sinonasal papillomas: systematic review and meta-analysis. Laryngoscope 123: 181-192
-
(2013)
Laryngoscope
, vol.123
, pp. 181-192
-
-
Syrjanen, K.1
Syrjanen, S.2
-
70
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
The Cancer Genome Atlas Research Network.
-
The Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. Nature 474: 609-615
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
-
72
-
-
48249130869
-
Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma
-
Tone AA, Begley H, Sharma M, Murphy J, Rosen B, Brown TJ, Shaw PA (2008) Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma. Clin Cancer Res 14: 4067-4078
-
(2008)
Clin Cancer Res
, vol.14
, pp. 4067-4078
-
-
Tone, A.A.1
Begley, H.2
Sharma, M.3
Murphy, J.4
Rosen, B.5
Brown, T.J.6
Shaw, P.A.7
-
73
-
-
52649085237
-
Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome
-
Tothill RW, Tinker AV, George J, Brown R, Fox SB, Lade S, Johnson DS, Trivett MK, Etemadmoghadam D, Locandro B, et al (2008) Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome. Clin Cancer Res 14: 5198-5208
-
(2008)
Clin Cancer Res
, vol.14
, pp. 5198-5208
-
-
Tothill, R.W.1
Tinker, A.V.2
George, J.3
Brown, R.4
Fox, S.B.5
Lade, S.6
Johnson, D.S.7
Trivett, M.K.8
Etemadmoghadam, D.9
Locandro, B.10
-
74
-
-
69549127963
-
PAX2 expression in low malignant potential ovarian tumors and low-grade ovarian serous carcinomas
-
Tung CS, Mok SC, Tsang YT, Zu Z, Song H, Liu J, Deavers MT, Malpica A, Wolf JK, Lu KH, et al (2009) PAX2 expression in low malignant potential ovarian tumors and low-grade ovarian serous carcinomas. Mod Pathol 22: 1243-1250
-
(2009)
Mod Pathol
, vol.22
, pp. 1243-1250
-
-
Tung, C.S.1
Mok, S.C.2
Tsang, Y.T.3
Zu, Z.4
Song, H.5
Liu, J.6
Deavers, M.T.7
Malpica, A.8
Wolf, J.K.9
Lu, K.H.10
-
75
-
-
80053168788
-
Rethinking ovarian cancer: recommendations for improving outcomes
-
Vaughan S, Coward JI, Bast RC Jr, Berchuck A, Berek JS, Brenton JD, Coukos G, Crum CC, Drapkin R, Etemadmoghadam D, et al (2011) Rethinking ovarian cancer: recommendations for improving outcomes. Nat Rev Cancer 11: 719-725
-
(2011)
Nat Rev Cancer
, vol.11
, pp. 719-725
-
-
Vaughan, S.1
Coward, J.I.2
Bast Jr, R.C.3
Berchuck, A.4
Berek, J.S.5
Brenton, J.D.6
Coukos, G.7
Crum, C.C.8
Drapkin, R.9
Etemadmoghadam, D.10
-
76
-
-
73649123907
-
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
-
Verhaak RG, Hoadley KA, Purdom E, Wang V, Qi Y, Wilkerson MD, Miller CR, Ding L, Golub T, Mesirov JP, et al (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17: 98-110
-
(2010)
Cancer Cell
, vol.17
, pp. 98-110
-
-
Verhaak, R.G.1
Hoadley, K.A.2
Purdom, E.3
Wang, V.4
Qi, Y.5
Wilkerson, M.D.6
Miller, C.R.7
Ding, L.8
Golub, T.9
Mesirov, J.P.10
-
77
-
-
84873862912
-
Prognostically relevant gene signatures of high-grade serous ovarian carcinoma
-
Verhaak RG, Tamayo P, Yang JY, Hubbard D, Zhang H, Creighton CJ, Fereday S, Lawrence M, Carter SL, Mermel CH, et al (2013) Prognostically relevant gene signatures of high-grade serous ovarian carcinoma. J Clin Invest 123: 517-525
-
(2013)
J Clin Invest
, vol.123
, pp. 517-525
-
-
Verhaak, R.G.1
Tamayo, P.2
Yang, J.Y.3
Hubbard, D.4
Zhang, H.5
Creighton, C.J.6
Fereday, S.7
Lawrence, M.8
Carter, S.L.9
Mermel, C.H.10
-
78
-
-
2142758687
-
HER-2 testing in breast cancer using parallel tissue-based methods
-
Yaziji H, Goldstein LC, Barry TS, Werling R, Hwang H, Ellis GK, Gralow JR, Livingston RB, Gown AM (2004) HER-2 testing in breast cancer using parallel tissue-based methods. JAMA 291: 1972-1977
-
(2004)
JAMA
, vol.291
, pp. 1972-1977
-
-
Yaziji, H.1
Goldstein, L.C.2
Barry, T.S.3
Werling, R.4
Hwang, H.5
Ellis, G.K.6
Gralow, J.R.7
Livingston, R.B.8
Gown, A.M.9
-
79
-
-
0032918414
-
TGF-beta signaling blockade inhibits PTHrP secretion by breast cancer cells and bone metastases development
-
Yin JJ, Selander K, Chirgwin JM, Dallas M, Grubbs BG, Wieser R, Massague J, Mundy GR, Guise TA (1999) TGF-beta signaling blockade inhibits PTHrP secretion by breast cancer cells and bone metastases development. J Clin Invest 103: 197-206
-
(1999)
J Clin Invest
, vol.103
, pp. 197-206
-
-
Yin, J.J.1
Selander, K.2
Chirgwin, J.M.3
Dallas, M.4
Grubbs, B.G.5
Wieser, R.6
Massague, J.7
Mundy, G.R.8
Guise, T.A.9
|