Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest

Journal of Biotechnology

Volumn 166, Issue 3, 2013, Pages 122-134

  Xiao, Mei ^a   Zhang, Ye ^a   Chen, Xue ^c   Lee, Eun Jeong ^c   Barber, Carla J S ^b   Chakrabarty, Romit ^c   Desgagné Penix, Isabel ^c   Haslam, Tegan M ^c   Kim, Yeon Bok ^b   Liu, Enwu ^b   MacNevin, Gillian ^c   Masada Atsumi, Sayaka ^d   Reed, Darwin W ^b   Stout, Jake M ^b   Zerbe, Philipp ^e   Zhang, Yansheng ^f   Bohlmann, Joerg ^e   Covello, Patrick S ^b   De Luca, Vincenzo ^d   Page, Jonathan E ^b   Ro, Dae Kyun ^c   Martin, Vincent J J ^g   Facchini, Peter J ^c   Sensen, Christoph W ^a   more..

^a UNIVERSITY OF CALGARY   (Canada)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^c UNIVERSITY OF CALGARY   (Canada)

^d BROCK UNIVERSITY   (Canada)

^e UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^f Wuhan Institute of Botany Chinese Academy of Sciences   (China)

^g Gina Cody School of Engineering and Computer Science   (Canada)

Author keywords

Bioinformatics; Illumina GA sequencing; Plant specialized metabolites; RNA seq; Roche 454 pyrosequencing; Transcriptomics

Indexed keywords

BIOTECHNOLOGICAL APPLICATIONS; COMPUTATIONAL ALGORITHM; ILLUMINA; NEXT-GENERATION SEQUENCING; PYROSEQUENCING; RNA-SEQ; TRANSCRIPTOME ANALYSIS; TRANSCRIPTOMICS;

BIOCHEMISTRY; BIOINFORMATICS; BIOTECHNOLOGY; GENES; GENETIC ALGORITHMS; METABOLITES;

BIOMOLECULES;

PLANT RNA; TRANSCRIPTOME;

ARTICLE; BIOSYNTHESIS; COMPUTER MODEL; DATA MINING; GENETIC ALGORITHM; NONHUMAN; PLANT BIOTECHNOLOGY; PLANT GENE; PLANT METABOLISM; PRIORITY JOURNAL; REFERENCE DATABASE; RNA SEQUENCE; SEQUENCE ANALYSIS;

ALGORITHMS; BIOTECHNOLOGY; COMPUTATIONAL BIOLOGY; DATA MINING; DATABASES, GENETIC; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; PLANTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; TRANSCRIPTOME;

EID: 84879541446     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2013.04.004     Document Type: Article

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