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Volumn 38, Issue 20, 2010, Pages 7079-7088

All-codon scanning identifies p53 cancer rescue mutations

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN P53;

EID: 78651288290     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq571     Document Type: Article
Times cited : (17)

References (52)
  • 1
    • 48249098990 scopus 로고    scopus 로고
    • Protein design by directed evolution
    • Jackel, C., Kast, P. and Hilvert, D. (2008) Protein design by directed evolution. Annu. Rev. Biophys., 37, 153-173.
    • (2008) Annu. Rev. Biophys. , vol.37 , pp. 153-173
    • Jackel, C.1    Kast, P.2    Hilvert, D.3
  • 2
    • 0037420824 scopus 로고    scopus 로고
    • The selective inhibition of phosphatases by natural toxins: The anhydride domain of tautomycin is not a primary factor in controlling PP1/PP2A selectivity
    • Liu, W., Sheppeck, J. E. 2nd, Colby, D. A., Huang, H. B., Nairn, A. C. and Chamberlin, A. R. (2003) The selective inhibition of phosphatases by natural toxins: the anhydride domain of tautomycin is not a primary factor in controlling PP1/PP2A selectivity. Bioorg. Med. Chem. Lett., 13, 1597-1600.
    • (2003) Bioorg. Med. Chem. Lett. , vol.13 , pp. 1597-1600
    • Liu, W.1    Sheppeck II, J.E.2    Colby, D.A.3    Huang, H.B.4    Nairn, A.C.5    Chamberlin, A.R.6
  • 3
    • 36749056244 scopus 로고    scopus 로고
    • Dissecting protein structure and function using directed evolution
    • Yuen, C. M. and Liu, D. R. (2007) Dissecting protein structure and function using directed evolution. Nat. Methods, 4, 995-997.
    • (2007) Nat. Methods , vol.4 , pp. 995-997
    • Yuen, C.M.1    Liu, D.R.2
  • 4
    • 0036841628 scopus 로고    scopus 로고
    • Creating randomized amino acid libraries with the quikchange multi site-directed mutagenesis kit
    • 1162, 1164-1155
    • Hogrefe, H. H., Cline, J., Youngblood, G. L. and Allen, R. M. (2002) Creating randomized amino acid libraries with the quikchange multi site-directed mutagenesis kit. Biotechniques, 33, 1158-1160, 1162, 1164-1155.
    • (2002) Biotechniques , vol.33 , pp. 1158-1160
    • Hogrefe, H.H.1    Cline, J.2    Youngblood, G.L.3    Allen, R.M.4
  • 5
    • 0029680709 scopus 로고    scopus 로고
    • Use of codon cassette mutagenesis for saturation mutagenesis
    • Kegler-Ebo, D. M., Polack, G. W. and DiMaio, D. (1996) Use of codon cassette mutagenesis for saturation mutagenesis. Methods Mol. Biol., 57, 297-310.
    • (1996) Methods Mol. Biol. , vol.57 , pp. 297-310
    • Kegler-Ebo, D.M.1    Polack, G.W.2    DiMaio, D.3
  • 7
    • 0029999325 scopus 로고    scopus 로고
    • Hypermutagenic PCR involving all four transitions and a sizeable proportion of transversions
    • Vartanian, J. P., Henry, M. and Wain-Hobson, S. (1996) Hypermutagenic PCR involving all four transitions and a sizeable proportion of transversions. Nucleic Acids Res., 24, 2627-2631.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2627-2631
    • Vartanian, J.P.1    Henry, M.2    Wain-Hobson, S.3
  • 8
    • 0028290287 scopus 로고
    • Codon cassette mutagenesis: A general method to insert or replace individual codons by using universal mutagenic cassettes
    • Kegler-Ebo, D. M., Docktor, C. M. and DiMaio, D. (1994) Codon cassette mutagenesis: a general method to insert or replace individual codons by using universal mutagenic cassettes. Nucleic Acids Res., 22, 1593-1599.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1593-1599
    • Kegler-Ebo, D.M.1    Docktor, C.M.2    DiMaio, D.3
  • 9
    • 0024403619 scopus 로고
    • High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
    • Cunningham, B. C. and Wells, J. A. (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science, 244, 1081-1085.
    • (1989) Science , vol.244 , pp. 1081-1085
    • Cunningham, B.C.1    Wells, J.A.2
  • 10
    • 34248567845 scopus 로고    scopus 로고
    • Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
    • Reetz, M. T. and Carballeira, J. D. (2007) Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat. Protoc., 2, 891-903.
    • (2007) Nat. Protoc. , vol.2 , pp. 891-903
    • Reetz, M.T.1    Carballeira, J.D.2
  • 11
    • 0034676455 scopus 로고    scopus 로고
    • Surfing the p53 network
    • Vogelstein, B., Lane, D. and Levine, A. J. (2000) Surfing the p53 network. Nature, 408, 307-310.
    • (2000) Nature , vol.408 , pp. 307-310
    • Vogelstein, B.1    Lane, D.2    Levine, A.J.3
  • 13
    • 0037816165 scopus 로고    scopus 로고
    • Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis
    • Kato, S., Han, S. Y., Liu, W., Otsuka, K., Shibata, H., Kanamaru, R. and Ishioka, C. (2003) Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proc. Natl Acad. Sci. USA, 100, 8424-8429.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8424-8429
    • Kato, S.1    Han, S.Y.2    Liu, W.3    Otsuka, K.4    Shibata, H.5    Kanamaru, R.6    Ishioka, C.7
  • 14
    • 33846935466 scopus 로고    scopus 로고
    • Cancer biology: Gone but not forgotten
    • Sharpless, N. E. and DePinho, R. A. (2007) Cancer biology: gone but not forgotten. Nature, 445, 606-607.
    • (2007) Nature , vol.445 , pp. 606-607
    • Sharpless, N.E.1    DePinho, R.A.2
  • 17
    • 0029911703 scopus 로고    scopus 로고
    • Dominant-negative p53 mutations selected in yeast hit cancer hot spots
    • Brachmann, R. K., Vidal, M. and Boeke, J. D. (1996) Dominant-negative p53 mutations selected in yeast hit cancer hot spots. Proc. Natl Acad. Sci. USA, 93, 4091-4095.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 4091-4095
    • Brachmann, R.K.1    Vidal, M.2    Boeke, J.D.3
  • 18
    • 0032055501 scopus 로고    scopus 로고
    • Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations
    • Brachmann, R. K., Yu, K., Eby, Y., Pavletich, N. P. and Boeke, J. D. (1998) Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations. EMBO J., 17, 1847-1859.
    • (1998) EMBO J. , vol.17 , pp. 1847-1859
    • Brachmann, R.K.1    Yu, K.2    Eby, Y.3    Pavletich, N.P.4    Boeke, J.D.5
  • 19
    • 34250800246 scopus 로고    scopus 로고
    • The screening of the second-site suppressor mutations of the common p53 mutants
    • Otsuka, K., Kato, S., Kakudo, Y., Mashiko, S., Shibata, H. and Ishioka, C. (2007) The screening of the second-site suppressor mutations of the common p53 mutants. Int. J. Cancer, 121, 559-566.
    • (2007) Int. J. Cancer , vol.121 , pp. 559-566
    • Otsuka, K.1    Kato, S.2    Kakudo, Y.3    Mashiko, S.4    Shibata, H.5    Ishioka, C.6
  • 21
    • 2142799564 scopus 로고    scopus 로고
    • Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: A novel method of primer design for high-fidelity assembly of longer gene sequences
    • Gao, X., Yo, P., Keith, A., Ragan, T. J. and Harris, T. K. (2003) Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: a novel method of primer design for high-fidelity assembly of longer gene sequences. Nucleic Acids Res., 31, e143.
    • (2003) Nucleic Acids Res. , vol.31
    • Gao, X.1    Yo, P.2    Keith, A.3    Ragan, T.J.4    Harris, T.K.5
  • 22
    • 0028110130 scopus 로고
    • DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
    • Stemmer, W. P. (1994) DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc. Natl Acad. Sci. USA, 91, 10747-10751.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10747-10751
    • Stemmer, W.P.1
  • 23
    • 11144247743 scopus 로고    scopus 로고
    • Accurate multiplex gene synthesis from programmable DNA microchips
    • Tian, J., Gong, H., Sheng, N., Zhou, X., Gulari, E., Gao, X. and Church, G. (2004) Accurate multiplex gene synthesis from programmable DNA microchips. Nature, 432, 1050-1054.
    • (2004) Nature , vol.432 , pp. 1050-1054
    • Tian, J.1    Gong, H.2    Sheng, N.3    Zhou, X.4    Gulari, E.5    Gao, X.6    Church, G.7
  • 25
    • 67650687073 scopus 로고    scopus 로고
    • You're one in a googol: Optimizing genes for protein expression
    • Welch, M., Villalobos, A., Gustafsson, C. and Minshull, J. (2009) You're one in a googol: optimizing genes for protein expression. J. Roy. Soc. Interface, 6 (Suppl. 4), S467-S476.
    • (2009) J. Roy. Soc. Interface , vol.6 , Issue.4 SUPPL.
    • Welch, M.1    Villalobos, A.2    Gustafsson, C.3    Minshull, J.4
  • 26
    • 0020363515 scopus 로고
    • Preferential codon usage in prokaryotic genes: The optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes
    • Grosjean, H. and Fiers, W. (1982) Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes. Gene, 18, 199-209.
    • (1982) Gene , vol.18 , pp. 199-209
    • Grosjean, H.1    Fiers, W.2
  • 28
    • 0036277249 scopus 로고    scopus 로고
    • Investigating the relationship between genome structure, composition, and ecology in prokaryotes
    • Lio, P. (2002) Investigating the relationship between genome structure, composition, and ecology in prokaryotes. Mol. Biol. Evol., 19, 789-800.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 789-800
    • Lio, P.1
  • 29
    • 0022519152 scopus 로고
    • Identification and characterization of a suppressor T cell hybridoma specifically inducible by L-glutamic acid60-L-alanine30-L-tyrosine10 (GAT)
    • Sorensen, C. M. and Pierce, C. W. (1986) Identification and characterization of a suppressor T cell hybridoma specifically inducible by L-glutamic acid60-L-alanine30-L-tyrosine10 (GAT). J. Immunol., 137, 1455-1461.
    • (1986) J. Immunol. , vol.137 , pp. 1455-1461
    • Sorensen, C.M.1    Pierce, C.W.2
  • 30
    • 0024673103 scopus 로고
    • Nonrandom utilization of codon pairs in Escherichia coli
    • Gutman, G. A. and Hatfield, G. W. (1989) Nonrandom utilization of codon pairs in Escherichia coli. Proc. Natl Acad. Sci. USA, 86, 3699-3703.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 3699-3703
    • Gutman, G.A.1    Hatfield, G.W.2
  • 31
    • 0020803632 scopus 로고
    • Characterization and nucleotide sequence of a chicken gene encoding an opal suppressor tRNA and its flanking DNA segments
    • Hatfield, D. L., Dudock, B. S. and Eden, F. C. (1983) Characterization and nucleotide sequence of a chicken gene encoding an opal suppressor tRNA and its flanking DNA segments. Proc. Natl Acad. Sci. USA, 80, 4940-4944.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 4940-4944
    • Hatfield, D.L.1    Dudock, B.S.2    Eden, F.C.3
  • 32
    • 0029162727 scopus 로고
    • Codon pair utilization biases influence translational elongation step times
    • Irwin, B., Heck, J. D. and Hatfield, G. W. (1995) Codon pair utilization biases influence translational elongation step times. J. Biol. Chem., 270, 22801-22806.
    • (1995) J. Biol. Chem. , vol.270 , pp. 22801-22806
    • Irwin, B.1    Heck, J.D.2    Hatfield, G.W.3
  • 33
    • 13444252845 scopus 로고    scopus 로고
    • Predicting oligonucleotide-directed mutagenesis failures in protein engineering
    • Wassman, C. D., Tam, P. Y., Lathrop, R. H. and Weiss, G. A. (2004) Predicting oligonucleotide-directed mutagenesis failures in protein engineering. Nucleic Acids Res., 32, 6407-6413.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6407-6413
    • Wassman, C.D.1    Tam, P.Y.2    Lathrop, R.H.3    Weiss, G.A.4
  • 35
    • 0026501752 scopus 로고
    • A rapid method for localized mutagenesis of yeast genes
    • Muhlrad, D., Hunter, R. and Parker, R. (1992) A rapid method for localized mutagenesis of yeast genes. Yeast, 8, 79-82.
    • (1992) Yeast , vol.8 , pp. 79-82
    • Muhlrad, D.1    Hunter, R.2    Parker, R.3
  • 37
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P. M. and Li, W. H. (1987) The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res., 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 38
    • 0036418698 scopus 로고    scopus 로고
    • Predicting out-of-sequence reassembly in DNA shuffling
    • Moore, G. L. and Maranas, C. D. (2002) Predicting out-of-sequence reassembly in DNA shuffling. J. Theor. Biol., 219, 9-17.
    • (2002) J. Theor. Biol. , vol.219 , pp. 9-17
    • Moore, G.L.1    Maranas, C.D.2
  • 40
    • 0032810904 scopus 로고    scopus 로고
    • Overexpression of a designed 2.2 kb gene of eukaryotic phenylalanine ammonia-lyase in Escherichia coli
    • Baedeker, M. and Schulz, G. E. (1999) Overexpression of a designed 2.2 kb gene of eukaryotic phenylalanine ammonia-lyase in Escherichia coli. FEBS Lett., 457, 57-60.
    • (1999) FEBS Lett. , vol.457 , pp. 57-60
    • Baedeker, M.1    Schulz, G.E.2
  • 41
    • 0035135741 scopus 로고    scopus 로고
    • Scaling up the ligase chain reaction-based approach to gene synthesis
    • Chalmers, F. M. and Curnow, K. M. (2001) Scaling up the ligase chain reaction-based approach to gene synthesis. Biotechniques, 30, 249-252.
    • (2001) Biotechniques , vol.30 , pp. 249-252
    • Chalmers, F.M.1    Curnow, K.M.2
  • 42
    • 0037095730 scopus 로고    scopus 로고
    • DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis
    • Hoover, D. M. and Lubkowski, J. (2002) DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis. Nucleic Acids Res., 30, e43.
    • (2002) Nucleic Acids Res. , vol.30
    • Hoover, D.M.1    Lubkowski, J.2
  • 44
    • 0035496607 scopus 로고    scopus 로고
    • Rescuing the function of mutant p53
    • Bullock, A. N. and Fersht, A. R. (2001) Rescuing the function of mutant p53. Nat. Rev. Cancer, 1, 68-76.
    • (2001) Nat. Rev. Cancer , vol.1 , pp. 68-76
    • Bullock, A.N.1    Fersht, A.R.2
  • 49
    • 9244229562 scopus 로고    scopus 로고
    • Analysis of void volumes in proteins and application to stability of the p53 tumour suppressor protein
    • Cuff, A. L. and Martin, A. C. (2004) Analysis of void volumes in proteins and application to stability of the p53 tumour suppressor protein. J. Mol. Biol., 344, 1199-1209.
    • (2004) J. Mol. Biol. , vol.344 , pp. 1199-1209
    • Cuff, A.L.1    Martin, A.C.2
  • 50
    • 18144387188 scopus 로고    scopus 로고
    • Structures of p53 cancer mutants and mechanism of rescue by second-site suppressor mutations
    • Joerger, A. C., Ang, H. C., Veprintsev, D. B., Blair, C. M. and Fersht, A. R. (2005) Structures of p53 cancer mutants and mechanism of rescue by second-site suppressor mutations. J. Biol. Chem., 280, 16030-16037.
    • (2005) J. Biol. Chem. , vol.280 , pp. 16030-16037
    • Joerger, A.C.1    Ang, H.C.2    Veprintsev, D.B.3    Blair, C.M.4    Fersht, A.R.5
  • 51
    • 0027983669 scopus 로고
    • Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
    • Cho, Y., Gorina, S., Jeffrey, P. D. and Pavletich, N. P. (1994) Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science, 265, 346-355.
    • (1994) Science , vol.265 , pp. 346-355
    • Cho, Y.1    Gorina, S.2    Jeffrey, P.D.3    Pavletich, N.P.4


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