Structural insights into the intrinsic self-assembly of par-3 N-terminal domain

Structure

Volumn 21, Issue 6, 2013, Pages 997-1006

  Zhang, Yan ^a   Wang, Wenjuan ^a,d   Chen, Jia ^b   Zhang, Kai ^a,d   Gao, Feng ^a   Gao, Bingquan ^a,d   Zhang, Shuai ^c   Dong, Mingdong ^c   Besenbacher, Flemming ^c   Gong, Weimin ^a   Zhang, Mingjie ^b   Sun, Fei ^a   Feng, Wei ^a  

^a INSTITUTE OF BIOPHYSICS   (China)

^b HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

^c AARHUS UNIVERSITY   (Denmark)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

HISTIDINE AMMONIALYASE; PROTEIN PAR 3; SCAFFOLD PROTEIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; ATOMIC FORCE MICROSCOPY; CELL POLARITY; CONTROLLED STUDY; CRYOELECTRON MICROSCOPY; CRYSTAL STRUCTURE; EPITHELIUM CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DOMAIN; PROTEIN STRUCTURE; STATIC ELECTRICITY; WILD TYPE;

CELL CYCLE PROTEINS; CRYOELECTRON MICROSCOPY; MEMBRANE PROTEINS; MICROSCOPY, ATOMIC FORCE; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

EID: 84878850080     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2013.04.004     Document Type: Article

References (53)

1. N. Arimura, and K. Kaibuchi Neuronal polarity: from extracellular signals to intracellular mechanisms Nat. Rev. Neurosci. 8 2007 194 205
2. R. Benton, and D. St Johnston A conserved oligomerization domain in drosophila Bazooka/PAR-3 is important for apical localization and epithelial polarity Curr. Biol. 13 2003 1330 1334
3. B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas, and A. Reilein Leginon: an automated system for acquisition of images from vitreous ice specimens J. Struct. Biol. 132 2000 33 45
4. J.R. Chan, C. Jolicoeur, J. Yamauchi, J. Elliott, J.P. Fawcett, B.K. Ng, and M. Cayouette The polarity protein Par-3 directly interacts with p75NTR to regulate myelination Science 314 2006 832 836
5. K.Y. Chan, J. Gumbart, R. McGreevy, J.M. Watermeyer, B.T. Sewell, and K. Schulten Symmetry-restrained flexible fitting for symmetric EM maps Structure 19 2011 1211 1218
6. X. Chen, and I.G. Macara Par-3 controls tight junction assembly through the Rac exchange factor Tiam1 Nat. Cell Biol. 7 2005 262 269
7. A.T. Dawes, and E.M. Munro PAR-3 oligomerization may provide an actin-independent mechanism to maintain distinct par protein domains in the early Caenorhabditis elegans embryo Biophys. J. 101 2011 1412 1422
8. DeLano, W.L. (2002). PyMOL Molecular Viewer. http://www.pymol.org.
9. M.D. Dong, M.B. Hovgaard, S.L. Xu, D.E. Otzen, and F. Besenbacher AFM study of glucagon fibrillation via oligomeric structures resulting in interwoven fibrils Nanotechnology 17 2006 4003 4009
10. D.G. Drubin, and W.J. Nelson Origins of cell polarity Cell 84 1996 335 344
11. K. Ebnet, A. Suzuki, Y. Horikoshi, T. Hirose, M.K. Meyer Zu Brickwedde, S. Ohno, and D. Vestweber The cell polarity protein ASIP/PAR-3 directly associates with junctional adhesion molecule (JAM) EMBO J. 20 2001 3738 3748
12. E.H. Egelman A robust algorithm for the reconstruction of helical filaments using single-particle methods Ultramicroscopy 85 2000 225 234
13. S. Etienne-Manneville, and A. Hall Cell polarity: Par6, aPKC and cytoskeletal crosstalk Curr. Opin. Cell Biol. 15 2003 67 72
14. W. Feng, H. Wu, L.N. Chan, and M. Zhang The Par-3 NTD adopts a PB1-like structure required for Par-3 oligomerization and membrane localization EMBO J. 26 2007 2786 2796
15. W. Feng, H. Wu, L.N. Chan, and M. Zhang Par-3-mediated junctional localization of the lipid phosphatase PTEN is required for cell polarity establishment J. Biol. Chem. 283 2008 23440 23449
16. J.J. Fernández, D. Luque, J.R. Castón, and J.L. Carrascosa Sharpening high resolution information in single particle electron cryomicroscopy J. Struct. Biol. 164 2008 170 175
17. J. Frank, M. Radermacher, P. Penczek, J. Zhu, Y. Li, M. Ladjadj, and A. Leith SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields J. Struct. Biol. 116 1996 190 199
18. B. Goldstein, and I.G. Macara The PAR proteins: fundamental players in animal cell polarization Dev. Cell 13 2007 609 622
19. T.J. Hung, and K.J. Kemphues PAR-6 is a conserved PDZ domain-containing protein that colocalizes with PAR-3 in Caenorhabditis elegans embryos Development 126 1999 127 135
20. M. Itoh, H. Sasaki, M. Furuse, H. Ozaki, T. Kita, and S. Tsukita Junctional adhesion molecule (JAM) binds to PAR-3: a possible mechanism for the recruitment of PAR-3 to tight junctions J. Cell Biol. 154 2001 491 497
21. Y.N. Jan, and L.Y. Jan Asymmetric cell division in the Drosophila nervous system Nat. Rev. Neurosci. 2 2001 772 779
22. G. Joberty, C. Petersen, L. Gao, and I.G. Macara The cell-polarity protein Par6 links Par3 and atypical protein kinase C to Cdc42 Nat. Cell Biol. 2 2000 531 539
23. L.A. Kelley, and M.J. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4 2009 363 371
24. K. Kemphues PARsing embryonic polarity Cell 101 2000 345 348
25. K.J. Kemphues, J.R. Priess, D.G. Morton, and N.S. Cheng Identification of genes required for cytoplasmic localization in early C. elegans embryos Cell 52 1988 311 320
26. J.A. Knoblich Asymmetric cell division: recent developments and their implications for tumour biology Nat. Rev. Mol. Cell Biol. 11 2010 849 860
27. G.C. Lander, S.M. Stagg, N.R. Voss, A. Cheng, D. Fellmann, J. Pulokas, C. Yoshioka, C. Irving, A. Mulder, and P.W. Lau Appion: an integrated, database-driven pipeline to facilitate EM image processing J. Struct. Biol. 166 2009 95 102
28. B. Li, H. Kim, M. Beers, and K. Kemphues Different domains of C. elegans PAR-3 are required at different times in development Dev. Biol. 344 2010 745 757
29. D. Lin, A.S. Edwards, J.P. Fawcett, G. Mbamalu, J.D. Scott, and T. Pawson A mammalian PAR-3-PAR-6 complex implicated in Cdc42/Rac1 and aPKC signalling and cell polarity Nat. Cell Biol. 2 2000 540 547
30. S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
31. I.G. Macara Parsing the polarity code Nat. Rev. Mol. Cell Biol. 5 2004 220 231
32. P. Markiewicz, and M.C. Goh Simulation of atomic force microscope tip-sample/sample-tip reconstruction J. Vac. Sci. Technol B 13 1995 1115 1118
33. F. Martin-Belmonte, and K. Mostov Regulation of cell polarity during epithelial morphogenesis Curr. Opin. Cell Biol. 20 2008 227 234
34. J.A. Mindell, and N. Grigorieff Accurate determination of local defocus and specimen tilt in electron microscopy J. Struct. Biol. 142 2003 334 347
35. K. Mizuno, A. Suzuki, T. Hirose, K. Kitamura, K. Kutsuzawa, M. Futaki, Y. Amano, and S. Ohno Self-association of PAR-3-mediated by the conserved N-terminal domain contributes to the development of epithelial tight junctions J. Biol. Chem. 278 2003 31240 31250
36. E. Morais-de-Sá, V. Mirouse, and D. St Johnston aPKC phosphorylation of Bazooka defines the apical/lateral border in Drosophila epithelial cells Cell 141 2010 509 523
37. Y. Nagai-Tamai, K. Mizuno, T. Hirose, A. Suzuki, and S. Ohno Regulated protein-protein interaction between aPKC and PAR-3 plays an essential role in the polarization of epithelial cells Genes Cells 7 2002 1161 1171
38. W.J. Nelson Adaptation of core mechanisms to generate cell polarity Nature 422 2003 766 774
39. T. Nishimura, and K. Kaibuchi Numb controls integrin endocytosis for directional cell migration with aPKC and PAR-3 Dev. Cell 13 2007 15 28
40. T. Nishimura, K. Kato, T. Yamaguchi, Y. Fukata, S. Ohno, and K. Kaibuchi Role of the PAR-3-KIF3 complex in the establishment of neuronal polarity Nat. Cell Biol. 6 2004 328 334
41. T. Nishimura, T. Yamaguchi, K. Kato, M. Yoshizawa, Y. Nabeshima, S. Ohno, M. Hoshino, and K. Kaibuchi PAR-6-PAR-3 mediates Cdc42-induced Rac activation through the Rac GEFs STEF/Tiam1 Nat. Cell Biol. 7 2005 270 277
42. S. Ohno Intercellular junctions and cellular polarity: the PAR-aPKC complex, a conserved core cassette playing fundamental roles in cell polarity Curr. Opin. Cell Biol. 13 2001 641 648
43. J. Pellettieri, and G. Seydoux Anterior-posterior polarity in C. elegans and Drosophila - PARallels and differences Science 298 2002 1946 1950
44. E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
45. S.Q. Schneider, and B. Bowerman Cell polarity and the cytoskeleton in the Caenorhabditis elegans zygote Annu. Rev. Genet. 37 2003 221 249
46. T.R. Shaikh, H. Gao, W.T. Baxter, F.J. Asturias, N. Boisset, A. Leith, and J. Frank SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs Nat. Protoc. 3 2008 1941 1974
47. K. Shin, V.C. Fogg, and B. Margolis Tight junctions and cell polarity Annu. Rev. Cell Dev. Biol. 22 2006 207 235
48. D. St Johnston, and J. Ahringer Cell polarity in eggs and epithelia: parallels and diversity Cell 141 2010 757 774
49. A. Suzuki, and S. Ohno The PAR-aPKC system: lessons in polarity J. Cell Sci. 119 2006 979 987
50. Y. Tabuse, Y. Izumi, F. Piano, K.J. Kemphues, J. Miwa, and S. Ohno Atypical protein kinase C cooperates with PAR-3 to establish embryonic polarity in Caenorhabditis elegans Development 125 1998 3607 3614
51. W. von Stein, A. Ramrath, A. Grimm, M. Müller-Borg, and A. Wodarz Direct association of Bazooka/PAR-3 with the lipid phosphatase PTEN reveals a link between the PAR/aPKC complex and phosphoinositide signaling Development 132 2005 1675 1686
52. A. Wodarz Establishing cell polarity in development Nat. Cell Biol. 4 2002 E39 E44
53. H. Wu, W. Feng, J. Chen, L.N. Chan, S. Huang, and M. Zhang PDZ domains of Par-3 as potential phosphoinositide signaling integrators Mol. Cell 28 2007 886 898