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Volumn 8, Issue 4, 2013, Pages

Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

Author keywords

[No Author keywords available]

Indexed keywords

LIGNOCELLULOSE;

EID: 84876543348     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0061928     Document Type: Article
Times cited : (88)

References (89)
  • 1
    • 0345767374 scopus 로고    scopus 로고
    • A survey of bacteria and fungi occurring during composting and self-heating processes
    • Ryckeboer J, Mergaert J, Vaes K, Klammer S, De Clercq D, et al. (2003) A survey of bacteria and fungi occurring during composting and self-heating processes. Annals of Microbiology 53: 349-410.
    • (2003) Annals of Microbiology , vol.53 , pp. 349-410
    • Ryckeboer, J.1    Mergaert, J.2    Vaes, K.3    Klammer, S.4    De Clercq, D.5
  • 2
    • 0038725007 scopus 로고    scopus 로고
    • Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis
    • Ishii K, Takii S, (2003) Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis. Journal of Applied Microbiology 95: 109-119.
    • (2003) Journal of Applied Microbiology , vol.95 , pp. 109-119
    • Ishii, K.1    Takii, S.2
  • 3
    • 28244438023 scopus 로고    scopus 로고
    • Microbial community growth and utilization of carbon constituents during thermophilic composting at different oxygen levels
    • Steger K, Eklind Y, Olsson J, Sundh I, (2005) Microbial community growth and utilization of carbon constituents during thermophilic composting at different oxygen levels. Microbial Ecology 50: 163-171.
    • (2005) Microbial Ecology , vol.50 , pp. 163-171
    • Steger, K.1    Eklind, Y.2    Olsson, J.3    Sundh, I.4
  • 4
    • 42249083028 scopus 로고    scopus 로고
    • Water availability is a critical determinant of a population shift from Proteobacteria to Actinobacteria during start-up operation of mesophilic fed-batch composting
    • Takebayashi S, Narihiro T, Fujii Y, Hiraishi A, (2007) Water availability is a critical determinant of a population shift from Proteobacteria to Actinobacteria during start-up operation of mesophilic fed-batch composting. Microbes and Environments 22: 279-289.
    • (2007) Microbes and Environments , vol.22 , pp. 279-289
    • Takebayashi, S.1    Narihiro, T.2    Fujii, Y.3    Hiraishi, A.4
  • 5
    • 77950369856 scopus 로고    scopus 로고
    • Microbial population dynamics and enzyme activities in composting processes with different starting materials
    • Vargas-Garcia MC, Suarez-Estrella F, Lopez MJ, Moreno J, (2010) Microbial population dynamics and enzyme activities in composting processes with different starting materials. Waste Management 30: 771-778.
    • (2010) Waste Management , vol.30 , pp. 771-778
    • Vargas-Garcia, M.C.1    Suarez-Estrella, F.2    Lopez, M.J.3    Moreno, J.4
  • 7
    • 79952666403 scopus 로고    scopus 로고
    • Composting of municipal solid waste
    • Kumar S, (2011) Composting of municipal solid waste. Critical Reviews in Biotechnology 31: 112-136.
    • (2011) Critical Reviews in Biotechnology , vol.31 , pp. 112-136
    • Kumar, S.1
  • 8
    • 0034105806 scopus 로고    scopus 로고
    • Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes
    • Peters S, Koschinsky S, Schwieger F, Tebbe CC, (2000) Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes. Applied and Environmental Microbiology 66: 930-936.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 930-936
    • Peters, S.1    Koschinsky, S.2    Schwieger, F.3    Tebbe, C.C.4
  • 9
    • 0346036050 scopus 로고    scopus 로고
    • Microbial community dynamics during composting of organic matter as determined by 16S ribosomal DNA analysis
    • Alfreider A, Peters S, Tebbe CC, Rangger A, Insam H, (2002) Microbial community dynamics during composting of organic matter as determined by 16S ribosomal DNA analysis. Compost Science & Utilization 10: 303-312.
    • (2002) Compost Science & Utilization , vol.10 , pp. 303-312
    • Alfreider, A.1    Peters, S.2    Tebbe, C.C.3    Rangger, A.4    Insam, H.5
  • 10
    • 34447543039 scopus 로고    scopus 로고
    • Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste
    • Steger K, Sjogren AM, Jarvis A, Jansson JK, Sundh I, (2007) Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste. Journal of Applied Microbiology 103: 487-498.
    • (2007) Journal of Applied Microbiology , vol.103 , pp. 487-498
    • Steger, K.1    Sjogren, A.M.2    Jarvis, A.3    Jansson, J.K.4    Sundh, I.5
  • 11
    • 34848852624 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of bacteria and its spatial distribution in composts
    • Guo Y, Zhu N, Zhu S, Deng C, (2007) Molecular phylogenetic diversity of bacteria and its spatial distribution in composts. Journal of Applied Microbiology 103: 1344-1354.
    • (2007) Journal of Applied Microbiology , vol.103 , pp. 1344-1354
    • Guo, Y.1    Zhu, N.2    Zhu, S.3    Deng, C.4
  • 12
    • 62549132510 scopus 로고    scopus 로고
    • Application of COMPOCHIP microarray to investigate the bacterial communities of different composts
    • Franke-Whittle IH, Knapp BA, Fuchs J, Kaufmann R, Insam H, (2009) Application of COMPOCHIP microarray to investigate the bacterial communities of different composts. Microbial Ecology 57: 510-521.
    • (2009) Microbial Ecology , vol.57 , pp. 510-521
    • Franke-Whittle, I.H.1    Knapp, B.A.2    Fuchs, J.3    Kaufmann, R.4    Insam, H.5
  • 13
    • 19444362151 scopus 로고    scopus 로고
    • Isolation and identification of fungal communities in compost and vermicompost
    • Anastasi A, Varese GC, Marchisio VF, (2005) Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97: 33-44.
    • (2005) Mycologia , vol.97 , pp. 33-44
    • Anastasi, A.1    Varese, G.C.2    Marchisio, V.F.3
  • 14
    • 74049144499 scopus 로고    scopus 로고
    • Determination of fungal succession during municipal solid waste composting using a cloning-based analysis
    • Hultman J, Vasara T, Partanen P, Kurola J, Kontro MH, et al. (2010) Determination of fungal succession during municipal solid waste composting using a cloning-based analysis. Journal of Applied Microbiology 108: 472-487.
    • (2010) Journal of Applied Microbiology , vol.108 , pp. 472-487
    • Hultman, J.1    Vasara, T.2    Partanen, P.3    Kurola, J.4    Kontro, M.H.5
  • 15
    • 46749150088 scopus 로고    scopus 로고
    • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
    • Bent SJ, Forney LJ, (2008) The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. The ISME Journal 2: 689-695.
    • (2008) The ISME Journal , vol.2 , pp. 689-695
    • Bent, S.J.1    Forney, L.J.2
  • 16
    • 72649084530 scopus 로고    scopus 로고
    • Polymerase chain reaction primers miss half of rRNA microbial diversity
    • Hong SH, Bunge J, Leslin C, Jeon S, Epstein SS, (2009) Polymerase chain reaction primers miss half of rRNA microbial diversity. The ISME Journal 3: 1365-1373.
    • (2009) The ISME Journal , vol.3 , pp. 1365-1373
    • Hong, S.H.1    Bunge, J.2    Leslin, C.3    Jeon, S.4    Epstein, S.S.5
  • 17
    • 79952100105 scopus 로고    scopus 로고
    • A review of molecular methods to study the microbiota of soil and the mycosphere
    • van Elsas JD, Boersma FGH, (2011) A review of molecular methods to study the microbiota of soil and the mycosphere. European Journal of Soil Biology 47: 77-87.
    • (2011) European Journal of Soil Biology , vol.47 , pp. 77-87
    • van Elsas, J.D.1    Boersma, F.G.H.2
  • 18
    • 84855692788 scopus 로고    scopus 로고
    • Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities
    • Gonzalez JM, Portillo MC, Belda-Ferre P, Mira A, (2012) Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities. PloS ONE 7: e29973.
    • (2012) PloS ONE , vol.7
    • Gonzalez, J.M.1    Portillo, M.C.2    Belda-Ferre, P.3    Mira, A.4
  • 19
    • 80052638464 scopus 로고    scopus 로고
    • Soil-specific limitations for access and analysis of soil microbial communities by metagenomics
    • Lombard N, Prestat E, van Elsas JD, Simonet P, (2011) Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. FEMS Microbiology Ecology 78: 31-49.
    • (2011) FEMS Microbiology Ecology , vol.78 , pp. 31-49
    • Lombard, N.1    Prestat, E.2    van Elsas, J.D.3    Simonet, P.4
  • 20
    • 77749274574 scopus 로고    scopus 로고
    • Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
    • Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, et al. (2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PloS ONE 5: e8812.
    • (2010) PloS ONE , vol.5
    • Allgaier, M.1    Reddy, A.2    Park, J.I.3    Ivanova, N.4    D'haeseleer, P.5
  • 21
    • 84859625932 scopus 로고    scopus 로고
    • Next-generation sequencing technologies for environmental DNA research
    • Shokralla S, Spall JL, Gibson JF, Hajibabaei M, (2012) Next-generation sequencing technologies for environmental DNA research. Molecular Ecology 21: 1794-1805.
    • (2012) Molecular Ecology , vol.21 , pp. 1794-1805
    • Shokralla, S.1    Spall, J.L.2    Gibson, J.F.3    Hajibabaei, M.4
  • 23
    • 71349088748 scopus 로고    scopus 로고
    • Achievements and new knowledge unraveled by metagenomic approaches
    • Simon C, Daniel R, (2009) Achievements and new knowledge unraveled by metagenomic approaches. Applied Microbiology and Biotechnology 85: 265-276.
    • (2009) Applied Microbiology and Biotechnology , vol.85 , pp. 265-276
    • Simon, C.1    Daniel, R.2
  • 26
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3    Kim, T.W.4    Chokhawala, H.5
  • 27
    • 84863757651 scopus 로고    scopus 로고
    • Metagenomic insights into the fibrolytic microbiome in yak rumen
    • Dai X, Zhu YX, Luo YF, Song L, Liu D, et al. (2012) Metagenomic insights into the fibrolytic microbiome in yak rumen. PloS ONE 7: e40430.
    • (2012) PloS ONE , vol.7
    • Dai, X.1    Zhu, Y.X.2    Luo, Y.F.3    Song, L.4    Liu, D.5
  • 29
    • 84863220189 scopus 로고    scopus 로고
    • Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization
    • Dougherty MJ, D'Haeseleer P, Hazen TC, Simmons BA, Adams PD, et al. (2012) Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization. BMC Biotechnology 12: 38.
    • (2012) BMC Biotechnology , vol.12 , pp. 38
    • Dougherty, M.J.1    D'Haeseleer, P.2    Hazen, T.C.3    Simmons, B.A.4    Adams, P.D.5
  • 31
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik V, Ovreas L, Thingstad TF, (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296: 1064-1066.
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreas, L.2    Thingstad, T.F.3
  • 33
    • 1042302949 scopus 로고    scopus 로고
    • The gut bacteria of insects: Nonpathogenic interactions
    • Dillon RJ, Dillon VM, (2004) The gut bacteria of insects: Nonpathogenic interactions. Annual Review of Entomology 49: 71-92.
    • (2004) Annual Review of Entomology , vol.49 , pp. 71-92
    • Dillon, R.J.1    Dillon, V.M.2
  • 34
  • 36
    • 77952431173 scopus 로고    scopus 로고
    • Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities
    • DeAngelis KM, Gladden JM, Allgaier M, D'haeseleer P, Fortney JL, et al. (2010) Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities. Bioenergy Research 3: 146-158.
    • (2010) Bioenergy Research , vol.3 , pp. 146-158
    • DeAngelis, K.M.1    Gladden, J.M.2    Allgaier, M.3    D'haeseleer, P.4    Fortney, J.L.5
  • 37
    • 36549000721 scopus 로고    scopus 로고
    • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    • Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565.
    • (2007) Nature , vol.450 , pp. 560-565
    • Warnecke, F.1    Luginbuhl, P.2    Ivanova, N.3    Ghassemian, M.4    Richardson, T.H.5
  • 39
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A, (2007) Multivariate analyses in microbial ecology. FEMS Microbiology Ecology 62: 142-160.
    • (2007) FEMS Microbiology Ecology , vol.62 , pp. 142-160
    • Ramette, A.1
  • 40
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server- a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5
  • 41
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research 37: D141-D145.
    • (2009) Nucleic Acids Research , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 42
    • 34848828515 scopus 로고    scopus 로고
    • Effects of differing temperature management on development of Actinobacteria populations during composting
    • Steger K, Jarvis A, Vasara T, Romantschuk M, Sundh I, (2007) Effects of differing temperature management on development of Actinobacteria populations during composting. Research in Microbiology 158: 617-624.
    • (2007) Research in Microbiology , vol.158 , pp. 617-624
    • Steger, K.1    Jarvis, A.2    Vasara, T.3    Romantschuk, M.4    Sundh, I.5
  • 43
    • 0035075108 scopus 로고    scopus 로고
    • Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA
    • Dees PM, Ghiorse WC, (2001) Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiology Ecology 35: 207-216.
    • (2001) FEMS Microbiology Ecology , vol.35 , pp. 207-216
    • Dees, P.M.1    Ghiorse, W.C.2
  • 45
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 73: 5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 46
    • 0142091645 scopus 로고    scopus 로고
    • Tracking temporal changes of bacterial community fingerprints during the initial stages of composting
    • Schloss PD, Hay AG, Wilson DB, Walker LP, (2003) Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. FEMS Microbiology Ecology 46: 1-9.
    • (2003) FEMS Microbiology Ecology , vol.46 , pp. 1-9
    • Schloss, P.D.1    Hay, A.G.2    Wilson, D.B.3    Walker, L.P.4
  • 49
    • 84856265232 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of Bacillus community and its temporal-spatial distribution during the swine manure of composting
    • Yi J, Wu HY, Wu J, Deng CY, Zheng R, et al. (2012) Molecular phylogenetic diversity of Bacillus community and its temporal-spatial distribution during the swine manure of composting. Applied Microbiology and Biotechnology 93: 411-421.
    • (2012) Applied Microbiology and Biotechnology , vol.93 , pp. 411-421
    • Yi, J.1    Wu, H.Y.2    Wu, J.3    Deng, C.Y.4    Zheng, R.5
  • 50
    • 10644262383 scopus 로고    scopus 로고
    • Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria
    • Kato S, Haruta S, Cui ZJ, Ishii M, Igarashi Y, (2004) Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria. FEMS Microbiology Ecology 51: 133-142.
    • (2004) FEMS Microbiology Ecology , vol.51 , pp. 133-142
    • Kato, S.1    Haruta, S.2    Cui, Z.J.3    Ishii, M.4    Igarashi, Y.5
  • 53
    • 35448975682 scopus 로고    scopus 로고
    • Microbial community succession and lignocellulose degradation during agricultural waste composting
    • Yu H, Zeng GM, Huang HL, Xi XM, Wang RY, et al. (2007) Microbial community succession and lignocellulose degradation during agricultural waste composting. Biodegradation 18: 793-802.
    • (2007) Biodegradation , vol.18 , pp. 793-802
    • Yu, H.1    Zeng, G.M.2    Huang, H.L.3    Xi, X.M.4    Wang, R.Y.5
  • 54
    • 77955174103 scopus 로고    scopus 로고
    • Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains
    • Rastogi G, Bhalla A, Adhikari A, Bischoff KM, Hughes SR, et al. (2010) Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains. Bioresource Technology 101: 8798-8806.
    • (2010) Bioresource Technology , vol.101 , pp. 8798-8806
    • Rastogi, G.1    Bhalla, A.2    Adhikari, A.3    Bischoff, K.M.4    Hughes, S.R.5
  • 55
    • 77951026835 scopus 로고    scopus 로고
    • Reconstruction of xylose utilization pathway and regulons in Firmicutes
    • Gu Y, Ding Y, Ren C, Sun Z, Rodionov DA, et al. (2010) Reconstruction of xylose utilization pathway and regulons in Firmicutes. BMC Genomics 11: 255.
    • (2010) BMC Genomics , vol.11 , pp. 255
    • Gu, Y.1    Ding, Y.2    Ren, C.3    Sun, Z.4    Rodionov, D.A.5
  • 56
    • 84856563821 scopus 로고    scopus 로고
    • Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
    • Gihring TM, Green SJ, Schadt CW, (2012) Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environmental Microbiology 14: 285-290.
    • (2012) Environmental Microbiology , vol.14 , pp. 285-290
    • Gihring, T.M.1    Green, S.J.2    Schadt, C.W.3
  • 57
    • 0034971178 scopus 로고    scopus 로고
    • Analyses of microbial community within a composter operated using household garbage with special reference to the addition of soybean oil
    • Aoshima M, Pedro MS, Haruta S, Ding LX, Fukada T, et al. (2001) Analyses of microbial community within a composter operated using household garbage with special reference to the addition of soybean oil. Journal of Bioscience and Bioengineering 91: 456-461.
    • (2001) Journal of Bioscience and Bioengineering , vol.91 , pp. 456-461
    • Aoshima, M.1    Pedro, M.S.2    Haruta, S.3    Ding, L.X.4    Fukada, T.5
  • 58
    • 1542297637 scopus 로고    scopus 로고
    • Molecular biological analysis of microflora in a garbage treatment process under thermoacidophilic conditions
    • Hemmi H, Shimoyama T, Nakayama T, Hoshi K, Nishino T, (2004) Molecular biological analysis of microflora in a garbage treatment process under thermoacidophilic conditions. Journal of Bioscience and Bioengineering 97: 119-126.
    • (2004) Journal of Bioscience and Bioengineering , vol.97 , pp. 119-126
    • Hemmi, H.1    Shimoyama, T.2    Nakayama, T.3    Hoshi, K.4    Nishino, T.5
  • 59
    • 56349120666 scopus 로고    scopus 로고
    • Analysis of bacterial activity, biomass and diversity during windrow composting
    • Adams JD, Frostick LE, (2009) Analysis of bacterial activity, biomass and diversity during windrow composting. Waste Management 29: 598-605.
    • (2009) Waste Management , vol.29 , pp. 598-605
    • Adams, J.D.1    Frostick, L.E.2
  • 62
    • 55649109829 scopus 로고    scopus 로고
    • Application of molecular identification tools for Lactobacillus, with a focus on discrimination between closely related species: A review
    • Singh S, Goswami P, Singh R, Heller KJ, (2009) Application of molecular identification tools for Lactobacillus, with a focus on discrimination between closely related species: A review. Lwt-Food Science and Technology 42: 448-457.
    • (2009) Lwt-Food Science and Technology , vol.42 , pp. 448-457
    • Singh, S.1    Goswami, P.2    Singh, R.3    Heller, K.J.4
  • 63
    • 84858006569 scopus 로고    scopus 로고
    • Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera
    • Lukjancenko O, Ussery DW, Wassenaar TM, (2012) Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microbial Ecology 63: 651-673.
    • (2012) Microbial Ecology , vol.63 , pp. 651-673
    • Lukjancenko, O.1    Ussery, D.W.2    Wassenaar, T.M.3
  • 68
    • 78650554767 scopus 로고    scopus 로고
    • Diversity of Lactobacillus and Bifidobacterium in feces of herbivores, omnivores and carnivores
    • Endo A, Futagawa-Endo Y, Dicks LMT, (2010) Diversity of Lactobacillus and Bifidobacterium in feces of herbivores, omnivores and carnivores. Anaerobe 16: 590-596.
    • (2010) Anaerobe , vol.16 , pp. 590-596
    • Endo, A.1    Futagawa-Endo, Y.2    Dicks, L.M.T.3
  • 70
    • 33747154459 scopus 로고    scopus 로고
    • Multidrug-resistance efflux pumps - not just for resistance
    • Piddock LJV, (2006) Multidrug-resistance efflux pumps- not just for resistance. Nature Reviews Microbiology 4: 629-636.
    • (2006) Nature Reviews Microbiology , vol.4 , pp. 629-636
    • Piddock, L.J.V.1
  • 71
    • 29144497085 scopus 로고    scopus 로고
    • Sequence and expression analyses of Cytophaga-like hydrolases in a Western arctic metagenomic library and the Sargasso seat
    • Cottrell MT, Yu LY, Kirchman DL, (2005) Sequence and expression analyses of Cytophaga-like hydrolases in a Western arctic metagenomic library and the Sargasso seat. Applied and Environmental Microbiology 71: 8506-8513.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8506-8513
    • Cottrell, M.T.1    Yu, L.Y.2    Kirchman, D.L.3
  • 73
    • 77953631886 scopus 로고    scopus 로고
    • Cellulosomes: Highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates
    • Fontes CMGA, Gilbert HJ, (2010) Cellulosomes: Highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates. Annual Review of Biochemistry 79: 655-681.
    • (2010) Annual Review of Biochemistry , vol.79 , pp. 655-681
    • Fontes, C.M.G.A.1    Gilbert, H.J.2
  • 75
    • 58249085751 scopus 로고    scopus 로고
    • Lignocellulosic residues: Biodegradation and bioconversion by fungi
    • Sanchez C, (2009) Lignocellulosic residues: Biodegradation and bioconversion by fungi. Biotechnol Advances 27: 185-194.
    • (2009) Biotechnol Advances , vol.27 , pp. 185-194
    • Sanchez, C.1
  • 76
    • 67349235552 scopus 로고    scopus 로고
    • DyP-type peroxidases comprise a novel heme peroxidase family
    • Sugano Y, (2009) DyP-type peroxidases comprise a novel heme peroxidase family. Cellular and Molecular Life Sciences 66: 1387-1403.
    • (2009) Cellular and Molecular Life Sciences , vol.66 , pp. 1387-1403
    • Sugano, Y.1
  • 77
    • 79958818206 scopus 로고    scopus 로고
    • Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1
    • Roberts JN, Singh R, Grigg JC, Murphy MEP, Bugg TDH, et al. (2011) Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1. Biochemistry 50: 5108-5119.
    • (2011) Biochemistry , vol.50 , pp. 5108-5119
    • Roberts, J.N.1    Singh, R.2    Grigg, J.C.3    Murphy, M.E.P.4    Bugg, T.D.H.5
  • 78
    • 77952368547 scopus 로고    scopus 로고
    • Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders
    • Ahmad M, Taylor CR, Pink D, Burton K, Eastwood D, et al. (2010) Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders. Molecular Biosystems 6: 815-821.
    • (2010) Molecular Biosystems , vol.6 , pp. 815-821
    • Ahmad, M.1    Taylor, C.R.2    Pink, D.3    Burton, K.4    Eastwood, D.5
  • 82
    • 84861313016 scopus 로고    scopus 로고
    • The metagenome of an anaerobic microbial community decomposing poplar wood chips
    • van der Lelie D, Taghavi S, McCorkle SM, Li LL, Malfatti SA, et al. (2012) The metagenome of an anaerobic microbial community decomposing poplar wood chips. PloS ONE 7: e36740.
    • (2012) PloS ONE , vol.7
    • van der Lelie, D.1    Taghavi, S.2    McCorkle, S.M.3    Li, L.L.4    Malfatti, S.A.5
  • 86
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, et al. (2012) Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 9: 811-814.
    • (2012) Nat Methods , vol.9 , pp. 811-814
    • Segata, N.1    Waldron, L.2    Ballarini, A.3    Narasimhan, V.4    Jousson, O.5


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