Microbial community succession and lignocellulose degradation during agricultural waste composting

Biodegradation

Volumn 18, Issue 6, 2007, Pages 793-802

  Yu, Hongyan ^a   Zeng, Guangming ^a,b   Huang, Hongli ^a   Xi, Xingmei ^a   Wang, Renyou ^a   Huang, Danlian ^a   Huang, Guohe ^a,b   Li, Jianbing ^a  

^a HUNAN UNIVERSITY   (China)

^b UNIVERSITY OF REGINA   (Canada)

Author keywords

Agricultural waste; Composting; Lignocellulose; Microbial community; Quinone profile

Indexed keywords

AGRICULTURAL WASTES; BACTERIA; COMPOSTING; DEGRADATION; FUNGI; LIGNIN;

MICROBIAL COMMUNITY; QUINONE PROFILE;

CELLULOSE;

CELLULOSE; LIGNIN; LIGNOCELLULOSE; QUINONE DERIVATIVE;

AGRICULTURAL WASTES; BACTERIA; CELLULOSE; COMPOSTING; DEGRADATION; FUNGI; LIGNIN;

AGRICULTURAL RUNOFF; BIODEGRADATION; BIOREMEDIATION; COMPOSTING; MICROBIAL COMMUNITY; SUCCESSION; WASTE;

AGRICULTURE; ARTICLE; BACTERIUM; BIODIVERSITY; BIOMASS; BIOREMEDIATION; CLUSTER ANALYSIS; FUNGUS; METABOLISM; METHODOLOGY; SOIL; TEMPERATURE; WASTE MANAGEMENT;

AGRICULTURE; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; BIODIVERSITY; BIOMASS; CELLULOSE; CLUSTER ANALYSIS; FUNGI; LIGNIN; QUINONES; SOIL; TEMPERATURE; WASTE MANAGEMENT;

BACTERIA; CELLULOSE; COMPOSTING; DEGRADATION; FUNGI;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); FUNGI; POSIBACTERIA;

EID: 35448975682     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-007-9108-8     Document Type: Article

References (44)

1. Beffa T, Blanc M, Lyon PF, Vogt G, Marchiani M, Lott Fischer J, Aragno M (1996) Isolation of Thermus strains from hot compost (60 to 80°C). Appl Environ Microbiol 62:1723-1727
2. Blanc M, Marilley L, Beff T (1999) Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular 16S rDNA methods. FEMS Microbiol Ecol 28:141-149
3. Boulter JI, Trevors JT, Boland GJ (2002) Microbial studies of compost: bacterial identification and their potential for turfgrass pathogen suppression. World J Microbiol Biotechnol 18:661-671
4. Chamuris GP, Koziol-Kotch S, Brouse TM (2000) Screening fungi isolated from woody compost for lignin-degrading potential. Compost Sci Util 8(1):6-11
5. Dees PM, Ghiorse WC (2001) Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol Ecol 35:207-216
6. Dixon N, Langer U (2006) Development of a MSW classification system for the evaluation of mechanical properties. Waste Manage 26:220-232
7. Franke-Whittle IH, Klammer SH, Insam H (2005) Design and application of an oligonucleotide microarray for the ivestigation of compost microbial communities. J Microbiol Meth 62:37-56
8. Fujie K, Hu HY, Tanaka H, Urano K, Saito K, Katayama A (1998) Analysis of respiratory quinone profile in soil for characterization of microbiota. Soil Sci Plant Nutr 44:393-404
9. Green SJ, Michel Jr C, Hadar Y, Minz D (2004) Similarity of bacterial communities in sawdust- and straw-amended cow manure composts. FEMS Microbiol Lett 233:115-123
10. Halet D, Boon N, Verstraete W (2006) Community dynamics of methanotrophic bacteria during composting of organic matter. J Biosci Bioeng 101(4):297-302
11. Hasanudin U, Fujita M, Kunihiro T, Fujie K, Suzuki T (2004) The effect of clams (Tapes philippinarum) on changes in microbial community structure in tidal flat sediment mesocosms, based on quinone profiles. Ecol Eng 22:185-196
12. Hassen A, Belguith K, Jedidi N, Cherif A, Cherif M, Boudabous A (2001) Microbial characterization during composting of municipal solid waste. Bioresource Technol 80:217-225
13. Herrmann RF, Shann JF (1997) Microbial community changes during the composting of municipal solid waste. Microb Ecol 33:78-85
14. Hiraishi A, Morishima Y, Takeuchi J (1991) Numerical analysis of lipoquinone patterns in monitoring bacterial community dynamics in wastewater treatment systems. J Gen Appl Microbiol 37:57-70
15. Hu HY, Fujie K, Nakagome H, Urano K, Katayama A (1999) Quantitative analyses of the change in microbial diversity in a bioreactor for wastewater treatment based on respiratory quinones. Water Res 33(15):3263-3270
16. Hu HY, Lim BR, Goto N, Fujie K (2001) Analytical precision and repeatability of respiratory quinones for quantitative study of microbial community structure in environmental samples. J Microbiol Meth 47:17-24
17. Jin X, Xu LH, Mao PH, Hseu TH, Jiang CL (1998) Description of saccharomonospora xinjiangensis sp. nov. based on chemical and molecular classification. Int J Syst Bacter 48:1095-1099
18. Kapat A, Dey S (2000) An alternative approach to the detection of lignin: a note on the application of ELISA using polyclonal antibodies. Bioproc Biosyst Eng 22(1):75-77
19. Katayama A, Funasaka K, Fujie K (2001) Changes in the respiratory quinone profile of a soil treated with pesticides. Biol Fertil Soils 33:454-459
20. Katayama A, Hu HY, Nozawa M, Yamakata H, Fujie K (1998) Long-term changes in microbial community structure in soils subjected to different fertilizing practices revealed by quinone profile analysis. Soil Sci Plant Nutr 44:559-569
21. Khalil AI, Beheary MS, Salem EM (2001) Monitoring of microbial populations and their cellulolytic activities during the compoting of municipal solid wastes. World J Microbiol Biotechnol 17:155-161
22. Klamer M, Bååth E (1998) Microbial community dynamics during composting of straw material studied using phospholipid fatty acid analysis. FEMS Microbiol Ecol 27:9-20
23. Kurisu F, Satoh H, Mino T, Matsuo T (2002) Microbial community analysis of thermophilic contact oxidation process by using ribosomal RNA approaches and the quinone profile method. Water Res 36:429-438
24. Laine MM, Haario H, Jørgensen KS (1997) Microbial functional activity during composting of chlorophenol-contaminated sawmill soil. J Microbiol Meth 30:21-32
25. Lin CK, Katayama Y, Hosomi M, Murakami A, Okada M (2003) The characteristics of the bacterial community structure and population dynamics for phosphorus removal in SBR activated sludge processes. Water Res 37:2944-2952
26. Maszenan AM, Seviour RJ, Patel BK, Schumann P, Burghardt J, Webb RI, Soddell JA, Rees GN (1999) Friedmanniella spumicola sp. nov. and Friedmanniella capsulata sp. nov. from activated sludge foam: gram-positive cocci that grow in aggregates of repeating groups of cocci. Int J Syst Bacteriol 49:1667-1680
27. Mondini C, Insam H (2003) Community level physiological profiling as a tool to evaluate compost maturity: a kinetic approach. Eur J Soil Biol 39:141-148
28. Nozawa M, Hu HY, Fujie K, Tsuchida T, Urano K (1998) Population dynamics of chromate reducing bacteria in a bioreactor system developed for the treatment of chromate wastewater. Water Sci Technol 37(4):109-112
29. Okunuki S, Kawaharasaki M, Tanaka H, Kanagawa T (2004) Changes in phosphorus removing performance and bacterial community structure in an enhanced biological phosphorus removal reactor. Water Res 38:2433-2439
30. Pantazaki AA, Pritsa AA, Kyriakidis DA (2002) Biotechnologically relevant enzymes from Thermus thermophilus. Appl Microbiol Biotechnol 58:1-12
31. Romano I, Gambacorta A, Lama L, Nicolaus B, Giordano A (2005) Bacillus saliphilus sp. vov., isolated from a mineral pool in Campania, Italy. Int J Syst Evol Microbiol 55:159-163
32. Saitou K, Nagasaki K, Yamakawa H, Hu HY, Fujie K, Katayama A (1999) Linear relation between the amount of respiratory quinones and the microbial biomass in soil. Soil Sci Plant Nutr 45:775-778
33. Song D, Katayama A (2005) Monitoring microbial community in a subsurface soil contaminated with hydrocarbons by quinone profile. Chemosphere 59:305-314
34. Steger K, Eklind Y, Olsson J, Sundh I (2005) Microbial community growth and utilization of carbon constituents during thermophilic composting at different oxygen levels. Microb Ecol 50(2):163-171
35. Strain Data in Japan Collection of Microorganisms. http://www.jcm.riken. go.jp/JCM/catalogue.html
36. Takizawa K, Fukushima K, Maebayashi Y, Okada K, Nishimura K, Miyaji M (1992) Isolation and structural elucidation of a dihydroubiquinone-9 from the fungus Aureobasidium pullulans. FEMS Microbiol Lett 92:120
37. Tang JC, Kanamori T, Inoue Y, Yasuta T, Yoshida S, Katayama A (2004) Changes in the microbial community structure during thermophilic composting of manure as detected by the quinone profile method. Process Biochem 39:1999-2006
38. Tang JC, Inoue Y, Yasuta T, Yoshida S, Katayama A (2003) Chemical and microbial properties of various compost products. Soil Sci Plant Nutr 49:273-280
39. Tiquia SM, Tam NFY, Hodgkiss IJ (1996) Microbial activities during composting of spent pig-manure sawdust litter at different moisture contents. Bioresource Technol 55:201-206
40. Tomati U, Galli E, Pasetti L, Volterra E (1995) Bioremediation of olive-mill wastewaters by composting. Waste Manag Res 13:509-518
41. Tuomela M, Vikman M, Hatakka A, Itävaara M (2000) Biodegradation of lignin in a compost environment: a review. Bioresource Technol 72:169-183
42. Van Soest PJ, Rovertson JB, Lewis BA (1991) Methods for dietary fiber, neutral detergent fiber, and nonstrach polysaccharides in relation to animal nutrition. J Dairy Sci 74:3583-3597
43. Waksman SA, Cordon TC, Hulpoi N (1939) Influence of temperature upon the microbiological population and decomposition processes in composts of stable manure. Soil Sci 47:83-114
44. World Data Center for Microorganisms. (1995) Quinone Database. http:rrwdcm.nig.ac.jprwdcmr Quinone.html