Molecular biological analysis of microflora in a garbage treatment process under thermoacidophilic conditions

Journal of Bioscience and Bioengineering

Volumn 97, Issue 2, 2004, Pages 119-126

  Hemmi, Hisashi ^a   Shimoyama, Takefumi ^a   Nakayama, Toru ^a   Hoshi, Katsuji ^b   Nishino, Tokuzo ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b Star Engineering Co Ltd   (Japan)

Author keywords

Acidulocomposting; Fluorescence in situ hybridization; Garbage treatment; Lactic acid bacteria; Microflora; Polymerase chain reaction denaturing gradient gel electrophoresis; Quantitative polymerase chain reaction; Recycle

Indexed keywords

BIOREACTORS; HEATING; MICROORGANISMS; MOLECULAR BIOLOGY;

MICROFLORA; THERMOACIDOPHILIC CONDITIONS;

WASTE TREATMENT;

ACIDITY; AGITATION; ARTICLE; BIOREACTOR; DENATURING GRADIENT GEL ELECTROPHORESIS; FLUORESCENCE IN SITU HYBRIDIZATION; HEATING; LACTIC ACID BACTERIUM; MICROFLORA; MICROSCOPY; NONHUMAN; POLYMERASE CHAIN REACTION; THERMOSTABILITY; WASTE; WASTE MANAGEMENT;

BACTERIA (MICROORGANISMS);

EID: 1542297637     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.97.119     Document Type: Article

References (21)

1. Karasek, F. W. and Hutzinger, O.: Dioxin danger from garbage incineration. Anal. Chem., 58, 633A-642A (1986).
2. Kimura, T.: Properties of composting reactions and development of new composting processes, p. 93-116. In Morita, A., Takeno, K., Kuba, Y., Sakagami, M., Kimura, T., Ogawa, H., Doshu, N., Shiotsu, K., Shinpo, H., Sankai, T., Matsubara, Y., Shimizu, Y., and Nishimori, S., Resource recovery and recycling technology of organic wastes. NTS Inc., Tokyo (2000). (in Japanese)
3. Nishino, T., Nakayama, T., Hemmi, H., Shimoyama, T., Yamashita, S., Akai, M., Kanagawa, T., and Hoshi, K.: Acidulocomposting, an accelerated composting process of garbage under thermoacidophilic conditions for prolonged periods. J. Environ. Biotechnol., 3, 33-36 (2003).
4. Ward, D. M., Weller, R., and Bateson, M. M.: 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol. Rev., 6, 105-115 (1990).
5. Amann, R. I., Ludwig, W., and Schleifer, K. H.: Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169 (1995).
6. Muyzer, G. and Smalla, K.: Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek, 73, 127-141 (1998).
7. Moter, A. and Göbel, U. B.: Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J. Microbiol. Methods, 41, 85-112 (2000).
8. Felske, A., Engelen, B., Nubel, U., and Backhaus, H.: Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ. Microbiol., 62, 4162-4167 (1996).
9. Sambrook, J., Fritsch, E. F., and Maniatis, T.: Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989).
10. Harmsen, H. J., Gibson, G. R., Elfferich, P., Raangs, G. C., Wildeboer-Veloo, A. C., Argaiz, A., Roberfroid, M. B., and Welling, G. W.: Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiol. Lett., 183, 125-129 (2000).
11. Walter, J., Hertel, C., Tannock, G. W., Lis, C. M., Munro, K., and Hammes, W. P.: Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol., 67, 2578-2585 (2001).
12. Davidson, B. E., Kordias, N., Dobos, M., and Hillier, A. J.: Genomic organization of lactic acid bacteria. Antonie Van Leeuwenhoek, 70, 161-183 (1996).
13. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., and 141 other authors: The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature, 390, 249-256 (1997).
14. Malinen, E., Kassinen, A., Rinttila, T., and Palva, A.: Comparison of real-time PCR with SYBR Green I or 5′-nuclease assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria. Microbiology, 149, 269-277 (2003).
15. Walker, D. C., Girgis, H. S., and Klaenhammer, T. R.: The groESL chaperone operon of Lactobacillus johnsonii. Appl. Environ. Microbiol., 65, 3033-3041 (1999).
16. Gouesbet, G., Jan, G., and Boyaval, P.: Two-dimensional electrophoresis study of Lactobacillus delbrueckii subsp. bulgaricus thermotolerance. Appl. Environ. Microbiol., 68, 1055-1063 (2002).
17. van Loosdrecht, M. C., Lyklema, J., Norde, W., and Zehnder, A. J.: Influence of interfaces on microbial activity. Microbiol. Rev., 54, 75-87 (1990).
18. Aoshima, M., Pedro, M. S., Haruta, S., Ding, L., Fukuda, T., Kigawa, A., Kodama, T., Ishii, M., and Igarashi, Y.: Analyses of microbial community within a composter operated using household garbage with special reference to the addition of soybean oil. J. Biosci. Bioeng., 91, 456-461 (2001).
19. Ishii, K., Fukui, M., and Takii, S.: Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis. J. Appl. Microbiol., 89, 768-777 (2000).
20. Dees, P.M. and Ghiorse, W.C.: Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol. Ecol., 35, 207-216 (2001).
21. Cleveland, J., Montville, T. J., Nes, I. F., and Chikindas, M. L.: Bacteriocins: safe, natural antimicrobials for food preservation. Int. J. Food Microbiol., 71, 1-20 (2001).