-
1
-
-
77749274574
-
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
-
Allgaier M, Reddy A, Park JI, Ivanova N, D'Haeseleer P, Lowry S et al (2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. Plos One 5: 9.
-
(2010)
Plos One
, vol.5
, pp. 9
-
-
Allgaier, M.1
Reddy, A.2
Park, J.I.3
Ivanova, N.4
D'Haeseleer, P.5
Lowry, S.6
-
2
-
-
0026091582
-
Metabolism of lignin-related compounds by Rhodococcus rhodochorous-bioconversion of anisoin
-
Andreoni V, Bernasconi S, Bestetti P, Villa M (1991) Metabolism of lignin-related compounds by Rhodococcus rhodochorous-bioconversion of anisoin. Appl Microbiol Biotechnol 36: 410-415.
-
(1991)
Appl Microbiol Biotechnol
, vol.36
, pp. 410-415
-
-
Andreoni, V.1
Bernasconi, S.2
Bestetti, P.3
Villa, M.4
-
3
-
-
0030882765
-
A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: Cloning and characterization of the hpp operon
-
Barnes MR, Duetz WA, Williams PA (1997) A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: Cloning and characterization of the hpp operon. J Bacteriol 179: 6145-6153.
-
(1997)
J Bacteriol
, vol.179
, pp. 6145-6153
-
-
Barnes, M.R.1
Duetz, W.A.2
Williams, P.A.3
-
4
-
-
0029765614
-
Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes
-
Baumann B, Snozzi M, Zehnder AJ, van Der Meer JR (1996) Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes. J Bacteriol 178: 4367-4374.
-
(1996)
J Bacteriol
, vol.178
, pp. 4367-4374
-
-
Baumann, B.1
Snozzi, M.2
Zehnder, A.J.3
van der Meer, J.R.4
-
5
-
-
0037345089
-
Removal of PCR inhibitors from soil DNA by chemical flocculation
-
Braid MD, Daniels LM, Kitts CL (2003) Removal of PCR inhibitors from soil DNA by chemical flocculation. J Microbiol Meth 52: 389-393.
-
(2003)
J Microbiol Meth
, vol.52
, pp. 389-393
-
-
Braid, M.D.1
Daniels, L.M.2
Kitts, C.L.3
-
6
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
Brodie EL, DeSantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL et al (2006) Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 72: 6288-6298.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6288-6298
-
-
Brodie, E.L.1
Desantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
-
7
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc JM, Antonopoulos DA, Miller MEB, Wilson MK, Yannarell AC, Dinsdale EA et al (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 106: 1948-1953.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.B.3
Wilson, M.K.4
Yannarell, A.C.5
Dinsdale, E.A.6
-
8
-
-
0035162041
-
Environmental fate and microbial degradation of aminopolycarboxylic acids
-
Bucheli-Witschel M, Egli T (2001) Environmental fate and microbial degradation of aminopolycarboxylic acids. FEMS Microbiol Rev 25: 69-106.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 69-106
-
-
Bucheli-Witschel, M.1
Egli, T.2
-
9
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-D238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
10
-
-
65549101695
-
Corn-based ethanol flunks key test
-
Charles D (2009) Corn-based ethanol flunks key test. Science 324: 587-587.
-
(2009)
Science
, vol.324
, pp. 587-587
-
-
Charles, D.1
-
11
-
-
0036137277
-
DNA sequence quality trimming and vector removal
-
Chou HH, Holmes MH (2001) DNA sequence quality trimming and vector removal. Bioinformatics 17: 1093-1104.
-
(2001)
Bioinformatics
, vol.17
, pp. 1093-1104
-
-
Chou, H.H.1
Holmes, M.H.2
-
15
-
-
65549123750
-
Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil
-
Degelmann DM, Kolb S, Dumont M, Murrell JC, Drake HL (2009) Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil. FEMS Microbiol Ecol 68: 312-319.
-
(2009)
FEMS Microbiol Ecol
, vol.68
, pp. 312-319
-
-
Degelmann, D.M.1
Kolb, S.2
Dumont, M.3
Murrell, J.C.4
Drake, H.L.5
-
16
-
-
0035208368
-
Sulfate reduction at a lignite seam: Microbial abundance and activity
-
Detmers J, Schulte U, Strauss H, Kuever J (2001) Sulfate reduction at a lignite seam: microbial abundance and activity. Microb Ecol 42: 238-247.
-
(2001)
Microb Ecol
, vol.42
, pp. 238-247
-
-
Detmers, J.1
Schulte, U.2
Strauss, H.3
Kuever, J.4
-
17
-
-
0031024669
-
Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP
-
Eulberg D, Golovleva LA, Schlomann M (1997) Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP. J Bacteriol 179: 370-381.
-
(1997)
J Bacteriol
, vol.179
, pp. 370-381
-
-
Eulberg, D.1
Golovleva, L.A.2
Schlomann, M.3
-
18
-
-
0031967850
-
Distribution of denitrification and nitrogen fixation genes in Hyphomicrobium spp. and other budding bacteria
-
Fesefeldt A, Kloos K, Bothe H, Lemmer H, Gliesche CG (1998) Distribution of denitrification and nitrogen fixation genes in Hyphomicrobium spp. and other budding bacteria. Can J Microbiol 44: 181-186.
-
(1998)
Can J Microbiol
, vol.44
, pp. 181-186
-
-
Fesefeldt, A.1
Kloos, K.2
Bothe, H.3
Lemmer, H.4
Gliesche, C.G.5
-
19
-
-
51249164707
-
Denitrifying ability of 13 Rhizobium meliloti strains
-
Garcia-Plazaola JI, Becerril JM, Arreseigor C, Hernandez A, Gonzalezmurua C, Apariciotejo PM (1993) Denitrifying ability of 13 Rhizobium meliloti strains. Plant Soil 149: 43-50.
-
(1993)
Plant Soil
, vol.149
, pp. 43-50
-
-
Garcia-Plazaola, J.I.1
Becerril, J.M.2
Arreseigor, C.3
Hernandez, A.4
Gonzalezmurua, C.5
Apariciotejo, P.M.6
-
20
-
-
0036407322
-
Metabolic diversity in aromatic compound utilization by anaerobic microbes
-
Gibson J, Harwood CS (2002) Metabolic diversity in aromatic compound utilization by anaerobic microbes. Annu Rev Microbiol 56: 345-369.
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 345-369
-
-
Gibson, J.1
Harwood, C.S.2
-
21
-
-
0344745136
-
Degradation of kraft indulin by Streptomyces viridosporus and Streptomyces badius
-
Giroux H, Vidal P, Bouchard J, Lamy F (1988) Degradation of kraft indulin by Streptomyces viridosporus and Streptomyces badius. Appl Environ Microbiol 54: 3064-3070.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 3064-3070
-
-
Giroux, H.1
Vidal, P.2
Bouchard, J.3
Lamy, F.4
-
22
-
-
0032733024
-
Beutenbergia cavernae gen. nov., sp, nov., an l-lysine-containing actinomycete isolated from a cave
-
Groth I, Schumann P, Schuetze B, Augsten K, Kramer I, Stackebrandt E (1999) Beutenbergia cavernae gen. nov., sp, nov., an l-lysine-containing actinomycete isolated from a cave. Int J Syst Bacteriol 49: 1733-1740.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1733-1740
-
-
Groth, I.1
Schumann, P.2
Schuetze, B.3
Augsten, K.4
Kramer, I.5
Stackebrandt, E.6
-
23
-
-
16144362010
-
Wide diversity of Crenarchaeota
-
Hershberger KL, Barns SM, Reysenbach AL, Dawson SC, Pace NR (1996) Wide diversity of Crenarchaeota. Nature 384: 420-420.
-
(1996)
Nature
, vol.384
, pp. 420-420
-
-
Hershberger, K.L.1
Barns, S.M.2
Reysenbach, A.L.3
Dawson, S.C.4
Pace, N.R.5
-
25
-
-
0030613344
-
Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
-
Janssen PH, Schuhmann A, Morschel E, Rainey FA (1997) Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63: 1382-1388.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1382-1388
-
-
Janssen, P.H.1
Schuhmann, A.2
Morschel, E.3
Rainey, F.A.4
-
27
-
-
68349104169
-
Effect of oxidized leachate on degradation of lignin by sulfate-reducing bacteria
-
Kim J, Kim M, Bae W (2009) Effect of oxidized leachate on degradation of lignin by sulfate-reducing bacteria. Waste Manag Res 27: 520-526.
-
(2009)
Waste Manag Res
, vol.27
, pp. 520-526
-
-
Kim, J.1
Kim, M.2
Bae, W.3
-
28
-
-
66149170336
-
Variation at range margins across multiple spatial scales: Environmental temperature, population genetics and metabolomic phenotype
-
Kunin WE, Vergeer P, Kenta T, Davey MP, Burke T, Woodward FI et al (2009) Variation at range margins across multiple spatial scales: environmental temperature, population genetics and metabolomic phenotype. Proceedings of the Royal Society B-Biological Sciences 276: 1495-1506.
-
(2009)
Proceedings of the Royal Society B-Biological Sciences
, vol.276
, pp. 1495-1506
-
-
Kunin, W.E.1
Vergeer, P.2
Kenta, T.3
Davey, M.P.4
Burke, T.5
Woodward, F.I.6
-
29
-
-
61949150134
-
Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
-
Lee KC, Webb RI, Janssen PH, Sangwan P, Romeo T, Staley JT, et al. (2009) Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiology 9.
-
(2009)
BMC Microbiology
, vol.9
-
-
Lee, K.C.1
Webb, R.I.2
Janssen, P.H.3
Sangwan, P.4
Romeo, T.5
Staley, J.T.6
-
30
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
-
Lee SK, Chou H, Ham TS, Lee TS, Keasling JD (2008) Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Curr Opin Biotechnol 19: 556-563.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
31
-
-
41649104638
-
FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds
-
Levasseur A, Plumi F, Coutinho PM, Rancurel C, Asther M, Delattre M et al (2008) FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol 45: 638-645.
-
(2008)
Fungal Genet Biol
, vol.45
, pp. 638-645
-
-
Levasseur, A.1
Plumi, F.2
Coutinho, P.M.3
Rancurel, C.4
Asther, M.5
Delattre, M.6
-
32
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS et al (2008) Evolution of mammals and their gut microbes. Science 320: 1647-1651.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
-
33
-
-
67449124798
-
Bioprospecting metagenomes: Glycosyl hydrolases for converting biomass
-
Li LL, McCorkle SR, Monchy S, Taghavi S, van der Lelie D (2009) Bioprospecting metagenomes: glycosyl hydrolases for converting biomass. Biotechnology for Biofuels 2: 11.
-
(2009)
Biotechnology for Biofuels
, vol.2
, pp. 11
-
-
Li, L.L.1
McCorkle, S.R.2
Monchy, S.3
Taghavi, S.4
van der Lelie, D.5
-
34
-
-
33847632903
-
Lignocellulose-degrading enzymes produced by the ascomycete Coniochaeta ligniaria and related species: Application for a lignocellulosic substrate treatment
-
Lopez MJ, Vargas-Garcìa MdC, Suarez-Estrella F, Nichols NN, Dien BS, Moreno J (2007) Lignocellulose-degrading enzymes produced by the ascomycete Coniochaeta ligniaria and related species: application for a lignocellulosic substrate treatment. Enzyme Microb Technol 40: 794-800.
-
(2007)
Enzyme Microb Technol
, vol.40
, pp. 794-800
-
-
Lopez, M.J.1
Vargas-Garcìa, M.D.C.2
Suarez-Estrella, F.3
Nichols, N.N.4
Dien, B.S.5
Moreno, J.6
-
35
-
-
33846485037
-
Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds
-
Masai E, Katayama Y, Fukuda M (2007) Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds. Biosci Biotechnol Biochem 71: 1-15.
-
(2007)
Biosci Biotechnol Biochem
, vol.71
, pp. 1-15
-
-
Masai, E.1
Katayama, Y.2
Fukuda, M.3
-
37
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M et al (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 8.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 8
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
-
38
-
-
38949113807
-
Bacterial carbon processing by generalist species in the coastal ocean
-
Mou XZ, Sun SL, Edwards RA, Hodson RE, Moran MA (2008) Bacterial carbon processing by generalist species in the coastal ocean. Nature 451: 708-U704.
-
(2008)
Nature
, vol.451
-
-
Mou, X.Z.1
Sun, S.L.2
Edwards, R.A.3
Hodson, R.E.4
Moran, M.A.5
-
39
-
-
33846625885
-
Global-scale similarities in nitrogen release patterns during long-term decomposition
-
Parton W, Silver WL, Burke IC, Grassens L (2007) Global-scale similarities in nitrogen release patterns during long-term decomposition. Science 315: 361-4.
-
(2007)
Science
, vol.315
, pp. 361-364
-
-
Parton, W.1
Silver, W.L.2
Burke, I.C.3
Grassens, L.4
-
40
-
-
0025289891
-
Lignin-solubilizing ability of Actinomycetes isolated from termite (Termitidae) hindgut
-
Pasti MB, Pometto AL, Nuti MP, Crawford DL (1990) Lignin-solubilizing ability of Actinomycetes isolated from termite (Termitidae) hindgut. Appl Environ Microbiol 56: 2213-2218.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 2213-2218
-
-
Pasti, M.B.1
Pometto, A.L.2
Nuti, M.P.3
Crawford, D.L.4
-
41
-
-
0032448328
-
A periplasmic and extracellular c-type cytochrome of Geobacter sulfurreducens acts as a ferric iron reductase and as an electron carrier to other acceptors or to partner bacteria
-
Seeliger S, Cord-Ruwisch R, Schink B (1998) A periplasmic and extracellular c-type cytochrome of Geobacter sulfurreducens acts as a ferric iron reductase and as an electron carrier to other acceptors or to partner bacteria. J Bacteriol 180: 3686-3691.
-
(1998)
J Bacteriol
, vol.180
, pp. 3686-3691
-
-
Seeliger, S.1
Cord-Ruwisch, R.2
Schink, B.3
-
42
-
-
0033037766
-
Soil oxygen availability and biogeochemistry along rainfall and topographic gradients in upland wet tropical forest soils
-
Silver WL, Lugo AE, Keller M (1999) Soil oxygen availability and biogeochemistry along rainfall and topographic gradients in upland wet tropical forest soils. Biogeochemistry 44: 301-328.
-
(1999)
Biogeochemistry
, vol.44
, pp. 301-328
-
-
Silver, W.L.1
Lugo, A.E.2
Keller, M.3
-
44
-
-
0021350907
-
Growth-yield increase linked to caffeate reduction in Acetobacterium woodii
-
Tschech A, Pfennig N (1984) Growth-yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137: 163-167.
-
(1984)
Arch Microbiol
, vol.137
, pp. 163-167
-
-
Tschech, A.1
Pfennig, N.2
-
45
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE et al (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-U487.
-
(2009)
Nature
, vol.457
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
46
-
-
63049092891
-
TerraGenome: A consortium for the sequencing of a soil metagenome
-
Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD et al (2009) TerraGenome: a consortium for the sequencing of a soil metagenome. Nat Rev Microbiol 7: 252-252.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 252-252
-
-
Vogel, T.M.1
Simonet, P.2
Jansson, J.K.3
Hirsch, P.R.4
Tiedje, J.M.5
van Elsas, J.D.6
-
47
-
-
69949114946
-
The electron transfer system of syntrophically grown Desulfovibrio vulgaris
-
Walker CB, He ZL, Yang ZK, Ringbauer JA, He Q, Zhou JH et al (2009) The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol 191: 5793-5801.
-
(2009)
J Bacteriol
, vol.191
, pp. 5793-5801
-
-
Walker, C.B.1
He, Z.L.2
Yang, Z.K.3
Ringbauer, J.A.4
He, Q.5
Zhou, J.H.6
-
48
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT et al (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-U517.
-
(2007)
Nature
, vol.450
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
-
49
-
-
0002773908
-
Forest structure and productivity in Puerto Rico Luquillo Mountains
-
Weaver PL, Murphy PG (1990) Forest structure and productivity in Puerto Rico Luquillo Mountains. Biotropica 22: 69-82.
-
(1990)
Biotropica
, vol.22
, pp. 69-82
-
-
Weaver, P.L.1
Murphy, P.G.2
-
50
-
-
34250150693
-
Studies on dissimilatory sulfate-reducing bacteria that decompose fatty-acids. 3. Characterization of the Filamentous Gliding Desulfonema limicola gen-nov sp-nov, and Desulfonema magnum sp-nov
-
Widdel F, Kohring GW, Mayer F (1983) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty-acids. 3. Characterization of the Filamentous Gliding Desulfonema limicola gen-nov sp-nov, and Desulfonema magnum sp-nov. Arch Microbiol 134: 286-294.
-
(1983)
Arch Microbiol
, vol.134
, pp. 286-294
-
-
Widdel, F.1
Kohring, G.W.2
Mayer, F.3
-
51
-
-
0025045135
-
Amplification of bacterial-16s ribosomal DNA with polymerase chain-reaction
-
Wilson KH, Blitchington RB, Greene RC (1990) Amplification of bacterial-16s ribosomal DNA with polymerase chain-reaction. J Clin Microbiol 28: 1942-1946.
-
(1990)
J Clin Microbiol
, vol.28
, pp. 1942-1946
-
-
Wilson, K.H.1
Blitchington, R.B.2
Greene, R.C.3
-
52
-
-
55949110376
-
Alkaliphilic sulfidogenesis on cellulose by combined cultures
-
Zavarzin GA, Zhilina TN, Dulov LE (2008) Alkaliphilic sulfidogenesis on cellulose by combined cultures. Microbiology 77: 419-429.
-
(2008)
Microbiology
, vol.77
, pp. 419-429
-
-
Zavarzin, G.A.1
Zhilina, T.N.2
Dulov, L.E.3
|