Effects of differing temperature management on development of Actinobacteria populations during composting

Research in Microbiology

Volumn 158, Issue 7, 2007, Pages 617-624

  Steger, Kristin ^a   Jarvis, Åsa ^a   Vasara, Tuija ^b   Romantschuk, Martin ^b   Sundh, Ingvar ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Actinobacteria specific primers; Compost; Microbial community structure; PCR DGGE; PLFA

Indexed keywords

FATTY ACID; ORGANIC MATTER; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL GENE; COMMUNITY STRUCTURE; COMPOST; COMPOSTING; CORYNEBACTERIUM; DEGRADATION; DENATURING GRADIENT GEL ELECTROPHORESIS; HEAT TOLERANCE; HUMIFICATION; MICROBIAL BIOMASS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POPULATION SIZE; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; REACTOR; RHODOCOCCUS; RNA SEQUENCE; SACCHAROMONOSPORA VIRIDIS; STREPTOMYCES; TEMPERATURE DEPENDENCE; THERMOBIFIDA FUSCA; THERMOBISPORA BISPORA;

ACTINOBACTERIA; BASE SEQUENCE; BIOMASS; COLONY COUNT, MICROBIAL; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID DENATURATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL; SOIL MICROBIOLOGY; TEMPERATURE;

ACTINOBACTERIA; CORYNEBACTERIUM; RHODOCOCCUS; SACCHAROMONOSPORA VIRIDIS; STREPTOMYCES; THERMOBIFIDA FUSCA; THERMOBISPORA BISPORA;

EID: 34848828515     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2007.05.006     Document Type: Article

References (36)

1. Blanc M., Marilley L., Beffa T., and Aragno M. Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods. FEMS Microbiol. Ecol. 28 (1999) 141-149
2. Coultate T.P., and Sundaram T.K. Energetics of Bacillus stearothermophilus growth: molar growth yield and temperature effects on growth efficiency. J. Bacteriol. 121 (1975) 55-64
3. Dees P.M., and Ghiorse W.C. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol. Ecol. 35 (2001) 207-216
4. Dowling N.J.E., Widdel F., and White D.C. Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulphate-reducers and other sulphide-forming bacteria. J. Gen. Microbiol. 132 (1986) 1815-1825
5. Y. Eklind, C. Sundberg, S. Smårs, K. Steger, I. Sundh, H. Kirchmann, H. Jönsson, Carbon turnover and ammonia emissions during composting of biowaste at different temperatures. J. Environ. Qual., in press.
6. Epstein E. In: Epstein E. (Ed). The Science of Composting (1997), CRC Press LLC, Boca Raton, Florida 77-106
7. Fergus C.L. Thermophilic and thermotolerant molds and actinomycetes of mushroom compost during peak heating. Mycologia 56 (1964) 267-284
8. Frostegård A., Tunlid A., and Bååth E. Microbial biomass measured as total lipid phosphate in soils of different organic content. J. Microbiol. Methods 14 (1991) 151-163
9. Frostegård A., Bååth E., and Tunlid A. Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty-acid analysis. Soil Biol. Biochem. 25 (1993) 723-730
10. Goodfellow M., and Williams S.T. Ecology of actinomycetes. Ann. Rev. Microbiol. 37 (1983) 189-216
11. Hartl W., Putz B., and Erhart E. Influence of rates and timing of biowaste compost application on rye yield and soil nitrate levels. Eur. J. Soil. Biol. 39 (2003) 129-139
12. Haug R.T. In: Haug R.T. (Ed). The Practical Handbook of Compost Engineering (1993), Lewis Publishers, Boca Raton, Florida 335-383
13. Herrmann R.F., and Shann J.F. Microbial community changes during the composting of municipal solid waste. Microb. Ecol. 33 (1997) 78-85
14. Heuer H., Krsek M., Baker P., Smalla K., and Wellington E. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63 (1997) 3233-3241
15. Insam H., Amor K., Renner M., and Crepaz C. Changes in functional abilities of the microbial community during composting of manure. Microb. Ecol. 31 (1996) 77-87
16. Jakobsen S.T. Aerobic decomposition of organic wastes 2. Value of compost as fertilizer. Resour. Conserv. Recy. 13 (1995) 57-71
17. Kates M. Techniques of Lipidology. Isolation, Analysis and Identification of Lipids (1986), Elsevier, Amsterdam
18. King J.D., White D.C., and Taylor C.W. Use of lipid composition and metabolism to examine structure and activity of estuarine detrital microflora. Appl. Environ. Microbiol. 33 (1977) 1177-1183
19. Klamer M., and Bååth E. Microbial community dynamics during composting of straw material studied using phospholipid fatty acid analysis. FEMS Microbiol. Ecol. 27 (1998) 9-20
20. Kroppenstedt R.M. In: Goodfellow M., and Minnikin D.E. (Eds). Chemical Methods in Bacterial Systematics (1985), Academic Press, London 173-199
21. Kroppenstedt R.M. In: Balows A., Trüper H.G., Dworkin M., Harder W., and Schleifer K.H. (Eds). The Prokaryotes (1992), Springer, Berlin Heidelberg New York 1139-1156
22. Lacey J. In: Sykes G., and Skinner F.A. (Eds). Actinomycetales: Characteristics and Practical Importance (1973), Academic Press, New York 231-251
23. Macnaughton S.J., and O'Donnell A.G. Tuberculostearic acid as a means of estimating the recovery (using dispersion and differential centrifugation) of actinomycetes from soil. J. Microbiol. Methods 20 (1994) 69-77
24. Mathur S.P., Owen G., Dinel H., and Schnitzer M. Determination of compost biomaturity. Biol. Agric. Hortic 10 (1993) 65-85
25. McCarthy A.J., and Williams S.T. Methods for studying the ecology of actinomycetes. Method. Microbiol. 22 (1990) 533-563
26. Miller F.C. In: Blaine Metting J.F. (Ed). Soil Microbial Ecology - Applications in Agricultural and Environmental Management (1993), Marcel Dekker, New York 515-539
27. Millner P.D. Thermophilic and thermotolerant actinomycetes in sewage-sludge compost. Dev. Ind. Microbiol. 23 (1981) 61-78
28. Muyzer G., Dewaal E.C., and Uitterlinden A.G. Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA. Appl. Environ. Microbiol. 59 (1993) 695-700
29. Pirt S.J. Principles of Microbe and Cell Cultivation (1975), Blackwell Scientific Publications, Oxford
30. Ryckeboer J., Mergaert J., Coosemans J., Deprins K., and Swings J. Microbiological aspects of biowaste during composting in a monitored compost bin. J. Appl. Microbiol. 94 (2003) 127-137
31. Smårs S., Beck-Friis B., Jonsson H., and Kirchmann H. An advanced experimental composting reactor for systematic simulation studies. J. Agr. Eng. Res. 78 (2001) 415-422
32. Steger K., Jarvis A., Smårs S., and Sundh I. Comparison of signature lipid methods to determine microbial community structure in compost. J. Microbiol. Methods 55 (2003) 371-382
33. K. Steger, Å.M. Sjögren, Å. Jarvis, J.K. Jansson, I. Sundh, Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste. J. Appl. Microbiol., in press.doi:10.1111/j.1365-2672.2006.03271.x
34. Tunlid A., and White D.C. Soil Biochemistry. In: Stotzky G., and Bollag J.-M. (Eds) (1992), Marcel Dekker, New York 229-262
35. Waksman, S.A., Umbreit, W.W., Cordon, T.C. Thermophilic actinomycetes and fungi in soils and in composts. Journal Series paper, New Jersey Agricultural Experiment Station, 1938, pp. 37-61.
36. Zelles L. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biol. Fertil. Soils 29 (1999) 111-129