메뉴 건너뛰기




Volumn 64, Issue , 2013, Pages 161-187

Plant protein interactomes

Author keywords

Functional genomics; Model plants and crops; Networks; Protein protein interactions

Indexed keywords

PROTEIN; VEGETABLE PROTEIN;

EID: 84876518387     PISSN: 15435008     EISSN: 15452123     Source Type: Book Series    
DOI: 10.1146/annurev-arplant-050312-120140     Document Type: Review
Times cited : (104)

References (162)
  • 1
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • Albert R, JeongH, Barabasi AL. 2000. Error and attack tolerance of complex networks. Nature 406:378-82
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.L.3
  • 2
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Arabidopsis Interactome Mapp Consort
    • Arabidopsis Interactome Mapp. Consort. 2011. Evidence for network evolution in an Arabidopsis interactome map. Science 333:601-7
    • (2011) Science , vol.333 , pp. 601-607
  • 3
    • 34249826038 scopus 로고    scopus 로고
    • Purification of a plantmediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit
    • Backstrom S, Elfving N, Nilsson R,Wingsle G, Bjorklund S. 2007. Purification of a plantmediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Mol. Cell 26:717-29
    • (2007) Mol. Cell , vol.26 , pp. 717-729
    • Backstrom, S.1    Elfving, N.2    Nilsson, R.3    Wingsle, G.4    Bjorklund, S.5
  • 4
    • 77955485244 scopus 로고    scopus 로고
    • Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes
    • Book AJ, Gladman NP, Lee SS, Scalf M, Smith LM, Vierstra RD. 2010. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. J. Biol.Chem. 285:25554-69
    • (2010) J. Biol.Chem , vol.285 , pp. 25554-25569
    • Book, A.J.1    Gladman, N.P.2    Lee, S.S.3    Scalf, M.4    Smith, L.M.5    Vierstra, R.D.6
  • 5
    • 77953186504 scopus 로고    scopus 로고
    • Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network
    • Boruc J, Van den Daele H, Hollunder J, Rombauts S, Mylle E, et al. 2010. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Plant Cell 22:1264-80
    • (2010) Plant Cell , vol.22 , pp. 1264-1280
    • Boruc, J.1    Van Den Daele, H.2    Hollunder, J.3    Rombauts, S.4    Mylle, E.5
  • 6
    • 48649096489 scopus 로고    scopus 로고
    • A protein domain-based interactome network for C. elegans early embryogenesis
    • Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, et al. 2008. A protein domain-based interactome network for C. elegans early embryogenesis. Cell 134:534-45
    • (2008) Cell , vol.134 , pp. 534-545
    • Boxem, M.1    Maliga, Z.2    Klitgord, N.3    Li, N.4    Lemmens, I.5
  • 7
    • 7044239645 scopus 로고    scopus 로고
    • Detection of protein-protein interactions in plants using bimolecular fluorescence complementation
    • Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, et al. 2004. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 40:419-27
    • (2004) Plant J , vol.40 , pp. 419-427
    • Bracha-Drori, K.1    Shichrur, K.2    Katz, A.3    Oliva, M.4    Angelovici, R.5
  • 9
    • 84862703457 scopus 로고    scopus 로고
    • Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays
    • Braun P. 2012. Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays. Proteomics 12:1499-518
    • (2012) Proteomics , vol.12 , pp. 1499-1518
    • Braun, P.1
  • 10
    • 84862659868 scopus 로고    scopus 로고
    • History of protein-protein interactions: From egg-white to complex networks
    • Braun P, Gingras AC. 2012. History of protein-protein interactions: from egg-white to complex networks. Proteomics 12:1478-98
    • (2012) Proteomics , vol.12 , pp. 1478-1498
    • Braun, P.1    Gingras, A.C.2
  • 11
    • 58149242456 scopus 로고    scopus 로고
    • An experimentally derived confidence score for binary protein-protein interactions
    • Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, et al. 2009. An experimentally derived confidence score for binary protein-protein interactions. Nat. Methods 6:91-97
    • (2009) Nat. Methods , vol.6 , pp. 91-97
    • Braun, P.1    Tasan, M.2    Dreze, M.3    Barrios-Rodiles, M.4    Lemmens, I.5
  • 12
    • 33845970196 scopus 로고    scopus 로고
    • Proteome analysis of plantvirus interactome: Comprehensive data for virus multiplication inside their hosts
    • Brizard JP, Carapito C, Delalande F, Van Dorsselaer A, Brugidou C. 2006. Proteome analysis of plantvirus interactome: comprehensive data for virus multiplication inside their hosts. Mol. Cell. Proteomics 5:2279-97
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 2279-2297
    • Brizard, J.P.1    Carapito, C.2    Delalande, F.3    Van Dorsselaer, A.4    Brugidou, C.5
  • 13
    • 0036662167 scopus 로고    scopus 로고
    • The FLEXGene repository: Exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era
    • Brizuela L, Richardson A, Marsischky G, Labaer J. 2002. The FLEXGene repository: exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era. Arch. Med. Res. 33:318-24
    • (2002) Arch. Med. Res , vol.33 , pp. 318-324
    • Brizuela, L.1    Richardson, A.2    Marsischky, G.3    Labaer, J.4
  • 15
    • 79956046616 scopus 로고    scopus 로고
    • Construction of high quality Gateway entry libraries and their application to yeast two-hybrid for the monocot model plant Brachypodium distachyon
    • Cao S, Siriwardana CL, Kumimoto RW, Holt BF III. 2011. Construction of high quality Gateway entry libraries and their application to yeast two-hybrid for the monocot model plant Brachypodium distachyon. BMC Biotechnol. 11:53
    • (2011) BMC Biotechnol , vol.11 , pp. 53
    • Cao, S.1    Siriwardana, C.L.2    Kumimoto, R.W.3    Holt Iii., B.F.4
  • 16
    • 4444282070 scopus 로고    scopus 로고
    • Studying the interactome with the yeast two-hybrid system and mass spectrometry
    • Causier B. 2004. Studying the interactome with the yeast two-hybrid system and mass spectrometry. Mass Spectrom. Rev. 23:350-67
    • (2004) Mass Spectrom. Rev , vol.23 , pp. 350-367
    • Causier, B.1
  • 17
    • 84855254094 scopus 로고    scopus 로고
    • The TOPLESS interactome: A framework for gene repression in Arabidopsis
    • Causier B, Ashworth M, Guo W, Davies B. 2012. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol. 158:423-38
    • (2012) Plant Physiol , vol.158 , pp. 423-438
    • Causier, B.1    Ashworth, M.2    Guo, W.3    Davies, B.4
  • 18
    • 67649235671 scopus 로고    scopus 로고
    • Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana
    • Chang IF, Curran A, Woolsey R, Quilici D, Cushman JC, et al. 2009. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Proteomics 9:2967-85
    • (2009) Proteomics , vol.9 , pp. 2967-2985
    • Chang, I.F.1    Curran, A.2    Woolsey, R.3    Quilici, D.4    Cushman, J.C.5
  • 19
    • 38949147924 scopus 로고    scopus 로고
    • Firefly luciferase complementation imaging assay for protein-protein interactions in plants
    • Chen H, Zou Y, Shang Y, LinH,Wang Y, et al. 2008. Firefly luciferase complementation imaging assay for protein-protein interactions in plants. Plant Physiol. 146:368-76
    • (2008) Plant Physiol , vol.146 , pp. 368-376
    • Chen, H.1    Zou, Y.2    Shang, Y.3    Lin, H.4    Wang, Y.5
  • 20
    • 84870725271 scopus 로고    scopus 로고
    • Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models
    • Chen J, Lalonde S,Obrdlik P, Noorani Vatani A, Parsa SA, et al. 2012. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Front. Plant Sci. 3:124
    • (2012) Front. Plant Sci , vol.3 , pp. 124
    • Chen, J.1    Lalonde, S.2    Obrdlik, P.3    Noorani Vatani, A.4    Parsa, S.A.5
  • 22
    • 33846341422 scopus 로고    scopus 로고
    • Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne
    • Ciannamea S, Kaufmann K, FrauM, Tonaco IA, Petersen K, et al. 2006. Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne. J. Exp. Bot. 57:3419-31
    • (2006) J. Exp. Bot , vol.57 , pp. 3419-3431
    • Ciannamea, S.1    Kaufmann, K.2    Frau, M.3    Tonaco, I.A.4    Petersen, K.5
  • 23
    • 48049117121 scopus 로고    scopus 로고
    • Localizing protein-protein interactions by bimolecular fluorescence complementation in planta
    • Citovsky V, Gafni Y,Tzfira T. 2008. Localizing protein-protein interactions by bimolecular fluorescence complementation in planta. Methods 45:196-206
    • (2008) Methods , vol.45 , pp. 196-206
    • Citovsky, V.1    Gafni, Y.2    Tzfira, T.3
  • 24
    • 38449101120 scopus 로고    scopus 로고
    • Integration of biological networks and gene expression data using Cytoscape
    • Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, et al. 2007. Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2:2366-82
    • (2007) Nat. Protoc , vol.2 , pp. 2366-2382
    • Cline, M.S.1    Smoot, M.2    Cerami, E.3    Kuchinsky, A.4    Landys, N.5
  • 26
    • 84863780541 scopus 로고    scopus 로고
    • CORNET 2.0: Integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations
    • De Bodt S, Hollunder J, Nelissen H, Meulemeester N, Inze D. 2012. CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations. New Phytol. 195:707-20
    • (2012) New Phytol , vol.195 , pp. 707-720
    • De Bodt, S.1    Hollunder, J.2    Nelissen, H.3    Meulemeester, N.4    Inze, D.5
  • 27
    • 68849117733 scopus 로고    scopus 로고
    • Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
    • De Bodt S, Proost S, Vandepoele K, Rouze P, Van de Peer Y. 2009. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. BMC Genomics 10:288
    • (2009) BMC Genomics , vol.10 , pp. 288
    • De Bodt, S.1    Proost, S.2    Vandepoele, K.3    Rouze, P.4    Van De Peer, Y.5
  • 28
    • 23944492980 scopus 로고    scopus 로고
    • Comprehensive interaction map of the Arabidopsis MADS box transcription factors
    • de Folter S, Immink RG, Kieffer M, Parenicova L, Henz SR, et al. 2005. Comprehensive interaction map of the Arabidopsis MADS box transcription factors. Plant Cell 17:1424-33
    • (2005) Plant Cell , vol.17 , pp. 1424-1433
    • De Folter, S.1    Immink, R.G.2    Kieffer, M.3    Parenicova, L.4    Henz, S.R.5
  • 30
    • 33646874523 scopus 로고    scopus 로고
    • Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: Establishment of a heterodimerization map of group C and group S bZIP transcription factors
    • Ehlert A, Weltmeier F, Wang X, Mayer CS, Smeekens S, et al. 2006. Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors. Plant J. 46:890-900
    • (2006) Plant J , vol.46 , pp. 890-900
    • Ehlert, A.1    Weltmeier, F.2    Wang, X.3    Mayer, C.S.4    Smeekens, S.5
  • 31
    • 84863003268 scopus 로고    scopus 로고
    • Tissue-specific alternative splicing remodels protein-protein interaction networks
    • Ellis JD, Barrios-Rodiles M, Colak R, Irimia M, Kim T, et al. 2012. Tissue-specific alternative splicing remodels protein-protein interaction networks. Mol. Cell 46:884-92
    • (2012) Mol. Cell , vol.46 , pp. 884-892
    • Ellis, J.D.1    Barrios-Rodiles, M.2    Colak, R.3    Irimia, M.4    Kim, T.5
  • 32
    • 58149306033 scopus 로고    scopus 로고
    • The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71
    • Ester C, Uetz P. 2008. The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71. BMC Biochem. 9:29
    • (2008) BMC Biochem , vol.9 , pp. 29
    • Ester, C.1    Uetz, P.2
  • 33
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O. 1989. A novel genetic system to detect protein-protein interactions. Nature 340:245-46
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 34
    • 13844264506 scopus 로고    scopus 로고
    • IPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    • Finn RD, Marshall M, Bateman A. 2005. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21:410-12
    • (2005) Bioinformatics , vol.21 , pp. 410-412
    • Finn, R.D.1    Marshall, M.2    Bateman, A.3
  • 35
    • 34748874756 scopus 로고    scopus 로고
    • Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts
    • Fujikawa Y, Kato N. 2007. Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts. Plant J. 52:185-95
    • (2007) Plant J , vol.52 , pp. 185-195
    • Fujikawa, Y.1    Kato, N.2
  • 37
    • 84863299556 scopus 로고    scopus 로고
    • Effector-triggered immunity signaling: From gene-for-gene pathways to protein-protein interaction networks
    • Gassmann W, Bhattacharjee S. 2012. Effector-triggered immunity signaling: from gene-for-gene pathways to protein-protein interaction networks. Mol. Plant-Microbe Interact. 25:862-68
    • (2012) Mol. Plant-Microbe Interact , vol.25 , pp. 862-868
    • Gassmann, W.1    Bhattacharjee, S.2
  • 38
    • 70349601671 scopus 로고    scopus 로고
    • New GATEWAY vectors for high throughput analyses of protein-protein interactions by bimolecular fluorescence complementation
    • Gehl C, Waadt R, Kudla J, Mendel RR, Hansch R. 2009. New GATEWAY vectors for high throughput analyses of protein-protein interactions by bimolecular fluorescence complementation. Mol. Plant 2:1051-58
    • (2009) Mol. Plant , vol.2 , pp. 1051-1058
    • Gehl, C.1    Waadt, R.2    Kudla, J.3    Mendel, R.R.4    Hansch, R.5
  • 40
    • 0034647238 scopus 로고    scopus 로고
    • Antiparallel leucine zipper-directed protein reassembly: Application to the green fluorescent protein
    • Ghosh I,Hamilton A, ReganL. 2000. Antiparallel leucine zipper-directed protein reassembly: application to the green fluorescent protein. J. Am. Chem. Soc. 122:5658-59
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 5658-5659
    • Ghosh, I.1    Hamilton, A.2    Regan, L.3
  • 41
    • 0345600247 scopus 로고    scopus 로고
    • A protein interactionmap of Drosophila melanogaster
    • Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. 2003. A protein interactionmap of Drosophila melanogaster. Science 302:1727-36
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1    Bader, J.S.2    Brouwer, C.3    Chaudhuri, A.4    Kuang, B.5
  • 42
    • 3042576717 scopus 로고    scopus 로고
    • Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes
    • Gong W, Shen YP, Ma LG, Pan Y, Du YL, et al. 2004. Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol. 135:773-82
    • (2004) Plant Physiol , vol.135 , pp. 773-782
    • Gong, W.1    Shen, Y.P.2    Ma, L.G.3    Pan, Y.4    Du, Y.L.5
  • 43
    • 67650594823 scopus 로고    scopus 로고
    • A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors
    • Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, et al. 2009. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27
    • (2009) Cell , vol.138 , pp. 314-327
    • Grove, C.A.1    De Masi, F.2    Barrasa, M.I.3    Newburger, D.E.4    Alkema, M.J.5
  • 45
    • 77955682054 scopus 로고    scopus 로고
    • Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data
    • He F, Zhou Y, Zhang Z. 2010. Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data. Plant Physiol. 153:1492-505
    • (2010) Plant Physiol , vol.153 , pp. 1492-1505
    • He, F.1    Zhou, Y.2    Zhang, Z.3
  • 46
    • 0036241055 scopus 로고    scopus 로고
    • Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation
    • Hu CD, Chinenov Y, Kerppola TK. 2002. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol. Cell 9:789-98
    • (2002) Mol. Cell , vol.9 , pp. 789-798
    • Hu, C.D.1    Chinenov, Y.2    Kerppola, T.K.3
  • 47
    • 0037995710 scopus 로고    scopus 로고
    • Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis
    • Hu CD, Kerppola TK. 2003. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis. Nat. Biotechnol. 21:539-45
    • (2003) Nat. Biotechnol , vol.21 , pp. 539-545
    • Hu, C.D.1    Kerppola, T.K.2
  • 48
    • 59549083190 scopus 로고    scopus 로고
    • Precision and recall estimates for two-hybrid screens
    • HuangH, Bader JS. 2009. Precision and recall estimates for two-hybrid screens. Bioinformatics 25:372-78
    • (2009) Bioinformatics , vol.25 , pp. 372-378
    • Huang, H.1    Bader, J.S.2
  • 49
    • 44349165131 scopus 로고    scopus 로고
    • Arabidopsis mRNA polyadenylation machinery: Comprehensive analysis of protein-protein interactions and gene expression profiling
    • Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, et al. 2008. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. BMC Genomics 9:220
    • (2008) BMC Genomics , vol.9 , pp. 220
    • Hunt, A.G.1    Xu, R.2    Addepalli, B.3    Rao, S.4    Forbes, K.P.5
  • 52
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interactionmap of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • ItoT,Tashiro K, Muta S, OzawaR,Chiba T, et al. 2000. Toward a protein-protein interactionmap of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci. USA 97:1143-47
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5
  • 53
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein-protein interactions from genomic data
    • Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, et al. 2003. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 302:449-53
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1    Yu, H.2    Greenbaum, D.3    Kluger, Y.4    Krogan, N.J.5
  • 54
    • 53349156368 scopus 로고    scopus 로고
    • Not comparable, but complementary
    • Jensen LJ, Bork P. 2008. Not comparable, but complementary. Science 322:56-57
    • (2008) Science , vol.322 , pp. 56-57
    • Jensen, L.J.1    Bork, P.2
  • 55
    • 33646854526 scopus 로고    scopus 로고
    • The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROIDINSENSITIVE1
    • Karlova R, Boeren S, Russinova E, Aker J, Vervoort J, de Vries S. 2006. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROIDINSENSITIVE1. Plant Cell 18:626-38
    • (2006) Plant Cell , vol.18 , pp. 626-638
    • Karlova, R.1    Boeren, S.2    Russinova, E.3    Aker, J.4    Vervoort, J.5    De Vries, S.6
  • 56
    • 75949087420 scopus 로고    scopus 로고
    • VirtualPlant: A software platform to support systems biology research
    • Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, et al. 2010. VirtualPlant: a software platform to support systems biology research. Plant Physiol. 152:500-15
    • (2010) Plant Physiol , vol.152 , pp. 500-515
    • Katari, M.S.1    Nowicki, S.D.2    Aceituno, F.F.3    Nero, D.4    Kelfer, J.5
  • 57
    • 0141593601 scopus 로고    scopus 로고
    • Conserved pathways within bacteria and yeast as revealed by global protein network alignment
    • Kelley BP, Sharan R, Karp RM, Sittler T, Root DE, et al. 2003. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl. Acad. Sci. USA 100:11394-99
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11394-11399
    • Kelley, B.P.1    Sharan, R.2    Karp, R.M.3    Sittler, T.4    Root, D.E.5
  • 58
    • 48249132926 scopus 로고    scopus 로고
    • Bimolecular fluorescence complementation (BiFC) analysis as a probe of protein interactions in living cells
    • Kerppola TK. 2008. Bimolecular fluorescence complementation (BiFC) analysis as a probe of protein interactions in living cells. Annu. Rev. Biophys. 37:465-87
    • (2008) Annu. Rev. Biophys , vol.37 , pp. 465-487
    • Kerppola, T.K.1
  • 60
    • 60349125228 scopus 로고    scopus 로고
    • PRISM: Protein-protein interaction prediction by structural matching
    • Keskin O, Nussinov R, Gursoy A. 2008. PRISM: protein-protein interaction prediction by structural matching. Methods Mol. Biol. 484:505-21
    • (2008) Methods Mol. Biol , vol.484 , pp. 505-521
    • Keskin, O.1    Nussinov, R.2    Gursoy, A.3
  • 61
    • 39549097090 scopus 로고    scopus 로고
    • Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service
    • Kim JG, Park D, Kim BC, Cho SW, Kim YT, et al. 2008. Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. BMC Bioinforma. 9:41
    • (2008) BMC Bioinforma , vol.9 , pp. 41
    • Kim, J.G.1    Park, D.2    Kim, B.C.3    Cho, S.W.4    Kim, Y.T.5
  • 62
    • 84877674140 scopus 로고    scopus 로고
    • IDDI: Integrated domain-domain interaction and protein interaction analysis system
    • KimY,Min B, Yi GS. 2012. IDDI: integrated domain-domain interaction and protein interaction analysis system. Proteome Sci. 10(Suppl. 1):S9
    • (2012) Proteome Sci , vol.10 , Issue.SUPPL. 1
    • Kim, Y.1    Min, B.2    Yi, G.S.3
  • 63
    • 80053396732 scopus 로고    scopus 로고
    • Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis
    • Klopffleisch K, Phan N, Augustin K, Bayne RS, Booker KS, et al. 2011. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Mol. Syst. Biol. 7:532
    • (2011) Mol. Syst. Biol , vol.7 , pp. 532
    • Klopffleisch, K.1    Phan, N.2    Augustin, K.3    Bayne, R.S.4    Booker, K.S.5
  • 65
    • 78649453991 scopus 로고    scopus 로고
    • A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2
    • Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, et al. 2010. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Front. Physiol. 1:24
    • (2010) Front. Physiol , vol.1 , pp. 24
    • Lalonde, S.1    Sero, A.2    Pratelli, R.3    Pilot, G.4    Chen, J.5
  • 66
    • 84862234802 scopus 로고    scopus 로고
    • The Arabidopsis InformationResource (TAIR): Improved gene annotation and new tools
    • D1210
    • Lamesch P,Berardini TZ,LiD, Swarbreck D, WilksC, et al. 2012. The Arabidopsis InformationResource (TAIR): improved gene annotation and new tools. Nucleic Acids Res. 40:D1202-10
    • (2012) Nucleic Acids Res , vol.40
    • Lamesch, P.1    Berardini, T.Z.2    Li, D.3    Swarbreck Wilks, D.C.4
  • 67
    • 76349125292 scopus 로고    scopus 로고
    • Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
    • Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. 2010. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat. Biotechnol. 28:149-56
    • (2010) Nat. Biotechnol , vol.28 , pp. 149-156
    • Lee, I.1    Ambaru, B.2    Thakkar, P.3    Marcotte, E.M.4    Rhee, S.Y.5
  • 68
    • 77953224209 scopus 로고    scopus 로고
    • Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets
    • Lee K, Thorneycroft D, Achuthan P, Hermjakob H, Ideker T. 2010. Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets. Plant Cell 22:997-1005
    • (2010) Plant Cell , vol.22 , pp. 997-1005
    • Lee, K.1    Thorneycroft, D.2    Achuthan, P.3    Hermjakob, H.4    Ideker, T.5
  • 69
    • 54849417596 scopus 로고    scopus 로고
    • Vectors for multi-color bimolecular fluorescence complementation to investigate protein-protein interactions in living plant cells
    • Lee LY, Fang MJ, Kuang LY, Gelvin SB. 2008. Vectors for multi-color bimolecular fluorescence complementation to investigate protein-protein interactions in living plant cells. Plant Methods 4:24
    • (2008) Plant Methods , vol.4 , pp. 24
    • Lee, L.Y.1    Fang, M.J.2    Kuang, L.Y.3    Gelvin, S.B.4
  • 70
    • 77957948556 scopus 로고    scopus 로고
    • Blind predictions of protein interfaces by docking calculations in CAPRI
    • LensinkMF, Wodak SJ. 2010. Blind predictions of protein interfaces by docking calculations in CAPRI. Proteins 78:3085-95
    • (2010) Proteins , vol.78 , pp. 3085-3095
    • Lensink, M.F.1    Wodak, S.J.2
  • 72
    • 80655139075 scopus 로고    scopus 로고
    • Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation
    • Li JF, Bush J, Xiong Y, Li L, McCormack M. 2011. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. PLoS ONE 6:e27364
    • (2011) PLoS ONE , vol.6
    • Li, J.F.1    Bush, J.2    Xiong, Y.3    Li, L.4    McCormack, M.5
  • 73
    • 78651281214 scopus 로고    scopus 로고
    • AtPID: The overall hierarchical functional protein interaction network interface and analytic platform for Arabidopsis
    • D1133
    • Li P, Zang W, Li Y, Xu F, Wang J, Shi T. 2011. AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for Arabidopsis. Nucleic Acids Res. 39:D1130-33
    • (2011) Nucleic Acids Res , vol.39
    • Li, P.1    Zang, W.2    Li, Y.3    Xu, F.4    Wang, J.5    Shi, T.6
  • 74
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li S, Armstrong CM, Bertin N, Ge H, Milstein S, et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303:540-43
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1    Armstrong, C.M.2    Bertin, N.3    Ge, H.4    Milstein, S.5
  • 75
    • 84862754618 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana
    • Li ZG, He F, Zhang Z, Peng YL. 2012. Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana. Amino Acids 42:2363-71
    • (2012) Amino Acids , vol.42 , pp. 2363-2371
    • Li, Z.G.1    He, F.2    Zhang, Z.3    Peng, Y.L.4
  • 76
    • 84859894363 scopus 로고    scopus 로고
    • Integrative systems biology: An attempt to describe a simple weed
    • Liberman LM, Sozzani R, Benfey PN. 2012. Integrative systems biology: an attempt to describe a simple weed. Curr. Opin. Plant Biol. 15:162-67
    • (2012) Curr. Opin. Plant Biol , vol.15 , pp. 162-167
    • Liberman, L.M.1    Sozzani, R.2    Benfey, P.N.3
  • 79
    • 78651323089 scopus 로고    scopus 로고
    • PAIR: The predicted Arabidopsis interactome resource
    • D1140
    • Lin M, Shen X, Chen X. 2011. PAIR: the predicted Arabidopsis interactome resource. Nucleic Acids Res. 39:D1134-40
    • (2011) Nucleic Acids Res , vol.39
    • Lin, M.1    Shen, X.2    Chen, X.3
  • 80
    • 79955631134 scopus 로고    scopus 로고
    • The predicted Arabidopsis interactome resource and network topology-based systems biology analyses
    • Lin M, Zhou X, Shen X, Mao C, Chen X. 2011. The predicted Arabidopsis interactome resource and network topology-based systems biology analyses. Plant Cell 23:911-22
    • (2011) Plant Cell , vol.23 , pp. 911-922
    • Lin, M.1    Zhou, X.2    Shen, X.3    Mao, C.4    Chen, X.5
  • 81
    • 79954589759 scopus 로고    scopus 로고
    • Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 1: Coating glass slides with amino silane
    • pdb.prot5056
    • Link AJ, Labaer J. 2008. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 1: coating glass slides with amino silane. Cold Spring Harb. Protoc. 2008:pdb.prot5056
    • (2008) Cold Spring Harb. Protoc , vol.2008
    • Link, A.J.1    Labaer, J.2
  • 82
    • 77953751381 scopus 로고    scopus 로고
    • Interactions among proteins of floral MADS-box genes in basal eudicots: Implications for evolution of the regulatory network for flower development
    • Liu C, Zhang J, Zhang N, Shan H, Su K, et al. 2010. Interactions among proteins of floral MADS-box genes in basal eudicots: implications for evolution of the regulatory network for flower development. Mol. Biol. Evol. 27:1598-611
    • (2010) Mol. Biol. Evol , vol.27 , pp. 1598-1611
    • Liu, C.1    Zhang, J.2    Zhang, N.3    Shan, H.4    Su, K.5
  • 83
    • 2442691596 scopus 로고    scopus 로고
    • Optimizing luciferase protein fragment complementation for bioluminescent imaging of protein-protein interactions in live cells and animals
    • Luker KE, Piwnica-WormsD. 2004. Optimizing luciferase protein fragment complementation for bioluminescent imaging of protein-protein interactions in live cells and animals. Methods Enzymol. 385:349-60
    • (2004) Methods Enzymol , vol.385 , pp. 349-360
    • Luker, K.E.1    Piwnica-Worms, D.2
  • 84
    • 4344656346 scopus 로고    scopus 로고
    • Kinetics of regulated protein-protein interactions revealedwith firefly luciferase complementation imaging in cells and living animals
    • Luker KE, Smith MC, Luker GD, Gammon ST, Piwnica-WormsH, Piwnica-WormsD. 2004. Kinetics of regulated protein-protein interactions revealedwith firefly luciferase complementation imaging in cells and living animals. Proc. Natl. Acad. Sci. USA 101:12288-93
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12288-12293
    • Luker, K.E.1    Smith, M.C.2    Luker, G.D.3    Gammon, S.T.4    Piwnica-Worms, H.5    Piwnica-Worms, D.6
  • 85
    • 0036898579 scopus 로고    scopus 로고
    • Protein microarrays and proteomics
    • MacBeath G. 2002. Protein microarrays and proteomics. Nat. Genet. 32(Suppl.):526-32
    • (2002) Nat. Genet , vol.32 , Issue.SUPPL. , pp. 526-532
    • Macbeath, G.1
  • 86
    • 11844252081 scopus 로고    scopus 로고
    • Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: Scope and mechanism
    • Magliery TJ,Wilson CG, PanW,MishlerD,Ghosh I, et al. 2005. Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism. J. Am. Chem. Soc. 127:146-57
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 146-157
    • Magliery, T.J.1    Wilson, C.G.2    Pan, W.3    Mishler, D.4    Ghosh, I.5
  • 87
    • 0041845736 scopus 로고    scopus 로고
    • Predicting functional linkages from gene fusions with confidence
    • Marcotte CJ, Marcotte EM. 2002. Predicting functional linkages from gene fusions with confidence. Appl. Bioinforma. 1:93-100
    • (2002) Appl. Bioinforma , vol.1 , pp. 93-100
    • Marcotte, C.J.1    Marcotte, E.M.2
  • 88
    • 0003238055 scopus 로고    scopus 로고
    • A novel in vivo assay for the analysis of protein-protein interaction
    • Maroun M, Aronheim A. 1999. A novel in vivo assay for the analysis of protein-protein interaction. Nucleic Acids Res. 27:e4
    • (1999) Nucleic Acids Res , vol.27
    • Maroun, M.1    Aronheim, A.2
  • 89
    • 67649506500 scopus 로고    scopus 로고
    • Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta
    • Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM. 2009. Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta. Plant J. 59:150-62
    • (2009) Plant J , vol.59 , pp. 150-162
    • Martin, K.1    Kopperud, K.2    Chakrabarty, R.3    Banerjee, R.4    Brooks, R.5    Goodin, M.M.6
  • 90
    • 77949539913 scopus 로고    scopus 로고
    • Global approaches to study protein-protein interactions among viruses and hosts
    • Mendez-Rios J, Uetz P. 2010. Global approaches to study protein-protein interactions among viruses and hosts. Future Microbiol. 5:289-301
    • (2010) Future Microbiol , vol.5 , pp. 289-301
    • Mendez-Rios, J.1    Uetz, P.2
  • 92
    • 38349183257 scopus 로고    scopus 로고
    • Study and selection of in vivo protein interactions by coupling bimolecular fluorescence complementation and flow cytometry
    • Morell M, Espargaro A, Aviles FX, Ventura S. 2008. Study and selection of in vivo protein interactions by coupling bimolecular fluorescence complementation and flow cytometry. Nat. Protoc. 3:22-33
    • (2008) Nat. Protoc , vol.3 , pp. 22-33
    • Morell, M.1    Espargaro, A.2    Aviles, F.X.3    Ventura, S.4
  • 94
    • 79960957705 scopus 로고    scopus 로고
    • Independently evolved virulence effectors converge onto hubs in a plant immune system network
    • MukhtarMS, Carvunis AR,Dreze M, Epple P, Steinbrenner J, et al. 2011. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333:596-601
    • (2011) Science , vol.333 , pp. 596-601
    • Mukhtar, M.S.1    Carvunis, A.R.2    Dreze, M.3    Epple, P.4    Steinbrenner, J.5
  • 95
    • 84877675762 scopus 로고    scopus 로고
    • The multinational coordinated Arabidopsis thaliana functional genomics project
    • Multinatl. Arabidopsis Steer. Comm Multinatl. Arabidopsis Steer. Comm
    • Multinatl. Arabidopsis Steer. Comm. 2011. The multinational coordinated Arabidopsis thaliana functional genomics project. Annu. Rep., Multinatl. Arabidopsis Steer. Comm. http://www.arabidopsis.org/ portals/masc/2011-MASC- Report.pdf
    • (2011) Annu. Rep.
  • 96
    • 84862660561 scopus 로고    scopus 로고
    • Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments
    • Nesvizhskii AI. 2012. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments. Proteomics 12:1639-55
    • (2012) Proteomics , vol.12 , pp. 1639-1655
    • Nesvizhskii, A.I.1
  • 97
    • 77950428777 scopus 로고    scopus 로고
    • Arabidopsis and the plant immune system
    • Nishimura MT, Dangl JL. 2010. Arabidopsis and the plant immune system. Plant J. 61:1053-66
    • (2010) Plant J , vol.61 , pp. 1053-1066
    • Nishimura, M.T.1    Dangl, J.L.2
  • 98
    • 37249039990 scopus 로고    scopus 로고
    • The analysis of protein-protein interactions in plants by bimolecular fluorescence complementation
    • Ohad N, Shichrur K, Yalovsky S. 2007. The analysis of protein-protein interactions in plants by bimolecular fluorescence complementation. Plant Physiol. 145:1090-99
    • (2007) Plant Physiol , vol.145 , pp. 1090-1099
    • Ohad, N.1    Shichrur, K.2    Yalovsky, S.3
  • 99
    • 84859208501 scopus 로고    scopus 로고
    • Protein interaction data curation: The International Molecular Exchange (IMEx) consortium
    • Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, et al. 2012. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat. Methods 9:345-50
    • (2012) Nat. Methods , vol.9 , pp. 345-350
    • Orchard, S.1    Kerrien, S.2    Abbani, S.3    Aranda, B.4    Bhate, J.5
  • 101
  • 103
    • 84856292259 scopus 로고    scopus 로고
    • Investigation of membrane protein interactions using the split-ubiquitin membrane yeast two-hybrid system
    • Petschnigg J, Wong V, Snider J, Stagljar I. 2012. Investigation of membrane protein interactions using the split-ubiquitin membrane yeast two-hybrid system. Methods Mol. Biol. 812:225-44
    • (2012) Methods Mol. Biol , vol.812 , pp. 225-244
    • Petschnigg, J.1    Wong, V.2    Snider, J.3    Stagljar, I.4
  • 104
    • 58949087283 scopus 로고    scopus 로고
    • The interactome: Predicting the protein-protein interactions in cells
    • Plewczynski D, Ginalski K. 2009. The interactome: predicting the protein-protein interactions in cells. Cell. Mol. Biol. Lett. 14:1-22
    • (2009) Cell. Mol. Biol. Lett , vol.14 , pp. 1-22
    • Plewczynski, D.1    Ginalski, K.2
  • 105
    • 34248363651 scopus 로고    scopus 로고
    • Differential binding of calmodulinrelated proteins to their targets revealed through high-density Arabidopsis proteinmicroarrays
    • Popescu SC, Popescu GV, Bachan S, Zhang Z, Seay M, et al. 2007. Differential binding of calmodulinrelated proteins to their targets revealed through high-density Arabidopsis proteinmicroarrays. Proc. Natl. Acad. Sci. USA 104:4730-35
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 4730-4735
    • Popescu, S.C.1    Popescu, G.V.2    Bachan, S.3    Zhang, Z.4    Seay, M.5
  • 106
    • 58149498875 scopus 로고    scopus 로고
    • MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays
    • Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, et al. 2009. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev. 23:80-92
    • (2009) Genes Dev , vol.23 , pp. 80-92
    • Popescu, S.C.1    Popescu, G.V.2    Bachan, S.3    Zhang, Z.4    Gerstein, M.5
  • 107
    • 33747853260 scopus 로고    scopus 로고
    • APID: Agile protein interaction DataAnalyzer
    • Prieto C, De Las Rivas J. 2006. APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res. 34:W298-302
    • (2006) Nucleic Acids Res , vol.34
    • Prieto, C.1    De Las Rivas, J.2
  • 108
    • 84859509535 scopus 로고    scopus 로고
    • Identification of kinase substrates by bimolecular complementation assays
    • Pusch S, Harashima H, Schnittger A. 2012. Identification of kinase substrates by bimolecular complementation assays. Plant J. 70:348-56
    • (2012) Plant J , vol.70 , pp. 348-356
    • Pusch, S.1    Harashima, H.2    Schnittger, A.3
  • 110
    • 0029089696 scopus 로고
    • Detection of protein-protein interactions by coimmunoprecipitation and dimerization
    • Ransone LJ. 1995. Detection of protein-protein interactions by coimmunoprecipitation and dimerization. Methods Enzymol. 254:491-97
    • (1995) Methods Enzymol , vol.254 , pp. 491-497
    • Ransone, L.J.1
  • 111
    • 0038708337 scopus 로고    scopus 로고
    • C. elegans ORFeome version 1.1: Experimental verification of the genome annotation and resource for proteome-scale protein expression
    • Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, et al. 2003. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Nat. Genet. 34:35-41
    • (2003) Nat. Genet , vol.34 , pp. 35-41
    • Reboul, J.1    Vaglio, P.2    Rual, J.F.3    Lamesch, P.4    Martinez, M.5
  • 113
    • 84856685540 scopus 로고    scopus 로고
    • Protein-protein interaction network and subcellular localization of the Arabidopsis thaliana ESCRT machinery
    • Richardson LG,Howard AS, Khuu N, Gidda SK,McCartney A, et al. 2011. Protein-protein interaction network and subcellular localization of the Arabidopsis thaliana ESCRT machinery. Front. Plant Sci. 2:20
    • (2011) Front. Plant Sci , vol.2 , pp. 20
    • Richardson, L.G.1    Howard, A.S.2    Khuu, N.3    Gidda, S.K.4    McCartney, A.5
  • 114
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut G, Shevchenko A, Rutz B,Wilm M, Mann M, Seraphin B. 1999. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17:1030-32
    • (1999) Nat. Biotechnol , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 115
    • 1842430185 scopus 로고    scopus 로고
    • Improved tandem affinity purification tag andmethods for isolation of protein heterocomplexes from plants
    • Rohila JS,ChenM,Cerny RL, Fromm ME. 2004. Improved tandem affinity purification tag andmethods for isolation of protein heterocomplexes from plants. Plant J. 38:172-81
    • (2004) Plant J , vol.38 , pp. 172-181
    • Rohila, J.S.1    Chen, M.2    Cerny, R.L.3    Fromm, M.E.4
  • 116
    • 33646831324 scopus 로고    scopus 로고
    • Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice
    • Rohila JS, Chen M, Chen S, Chen J, Cerny RL, et al. 2006. Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. Plant J. 46:1-13
    • (2006) Plant J , vol.46 , pp. 1-13
    • Rohila, J.S.1    Chen, M.2    Chen, S.3    Chen, J.4    Cerny, R.L.5
  • 117
    • 68949196718 scopus 로고    scopus 로고
    • Protein-protein interactions of tandem affinity purified protein kinases from rice
    • Rohila JS, Chen M, Chen S, Chen J, Cerny RL, et al. 2009. Protein-protein interactions of tandem affinity purified protein kinases from rice. PLoS ONE 4:e6685
    • (2009) PLoS ONE , vol.4
    • Rohila, J.S.1    Chen, M.2    Chen, S.3    Chen, J.4    Cerny, R.L.5
  • 118
    • 79960859584 scopus 로고    scopus 로고
    • The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens
    • Roux M, Schwessinger B, Albrecht C, Chinchilla D, Jones A, et al. 2011. The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens. Plant Cell 23:2440-55
    • (2011) Plant Cell , vol.23 , pp. 2440-2455
    • Roux, M.1    Schwessinger, B.2    Albrecht, C.3    Chinchilla, D.4    Jones, A.5
  • 119
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human protein-protein interaction network
    • Rual JF, Venkatesan K,Hao T, Hirozane-Kishikawa T, Dricot A, et al. 2005. Towards a proteome-scale map of the human protein-protein interaction network. Nature 437:1173-78
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1    Venkatesan, K.2    Hao, T.3    Hirozane-Kishikawa, T.4    Dricot, A.5
  • 120
    • 14844310253 scopus 로고    scopus 로고
    • An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation
    • Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, et al. 2005. An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J. 41:767-78
    • (2005) Plant J , vol.41 , pp. 767-778
    • Rubio, V.1    Shen, Y.2    Saijo, Y.3    Liu, Y.4    Gusmaroli, G.5
  • 121
    • 77955484871 scopus 로고    scopus 로고
    • Large scale interaction analysis predicts that the Gerbera hybrida floral e function is provided both by general and specialized proteins
    • Ruokolainen S, Ng YP, Albert VA, Elomaa P, Teeri TH. 2010. Large scale interaction analysis predicts that the Gerbera hybrida floral E function is provided both by general and specialized proteins. BMC Plant Biol. 10:129
    • (2010) BMC Plant Biol , vol.10 , pp. 129
    • Ruokolainen, S.1    Ng, Y.P.2    Albert, V.A.3    Elomaa, P.4    Teeri, T.H.5
  • 122
    • 34247208671 scopus 로고    scopus 로고
    • A comprehensive analysis of the 14-3-3 interactome in barley leaves using a complementary proteomics and two-hybrid approach
    • Schoonheim PJ,Veiga H, da Costa Pereira D, FrisoG, van Wijk KJ, de Boer AH. 2007. A comprehensive analysis of the 14-3-3 interactome in barley leaves using a complementary proteomics and two-hybrid approach. Plant Physiol. 143:670-83
    • (2007) Plant Physiol , vol.143 , pp. 670-683
    • Schoonheim, P.J.1    Veiga, H.2    Da Costa Pereira, D.3    Friso, G.4    Van Wijk, K.J.5    De Boer, A.H.6
  • 123
    • 79955605835 scopus 로고    scopus 로고
    • Towards establishment of a rice stress response interactome
    • Seo YS, Chern M, Bartley LE, Han M, Jung KH, et al. 2011. Towards establishment of a rice stress response interactome. PLoS Genet. 7:e1002020
    • (2011) PLoS Genet , vol.7
    • Seo, Y.S.1    Chern, M.2    Bartley, L.E.3    Han, M.4    Jung, K.H.5
  • 124
    • 83055186516 scopus 로고    scopus 로고
    • Split-protein systems: Beyond binary protein-protein interactions
    • Shekhawat SS, Ghosh I. 2011. Split-protein systems: beyond binary protein-protein interactions. Curr. Opin. Chem. Biol. 15:789-97
    • (2011) Curr. Opin. Chem. Biol , vol.15 , pp. 789-797
    • Shekhawat, S.S.1    Ghosh, I.2
  • 125
    • 58149218155 scopus 로고    scopus 로고
    • Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
    • Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, et al. 2009. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat. Methods 6:47-54
    • (2009) Nat. Methods , vol.6 , pp. 47-54
    • Simonis, N.1    Rual, J.F.2    Carvunis, A.R.3    Tasan, M.4    Lemmens, I.5
  • 126
    • 84859055139 scopus 로고    scopus 로고
    • Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling
    • Simonsen M, Maetschke SR, RaganMA. 2012. Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. Bioinformatics 28:851-57
    • (2012) Bioinformatics , vol.28 , pp. 851-857
    • Simonsen, M.1    Maetschke, S.R.2    Ragan, M.A.3
  • 127
    • 84863116642 scopus 로고    scopus 로고
    • Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development
    • Smaczniak C, Immink RG, Muino JM, Blanvillain R, Busscher M, et al. 2012. Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Proc. Natl. Acad. Sci. USA 109:1560-65
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 1560-1565
    • Smaczniak, C.1    Immink, R.G.2    Muino, J.M.3    Blanvillain, R.4    Busscher, M.5
  • 128
    • 0036468385 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions by docking methods
    • Smith GR, Sternberg MJ. 2002. Prediction of protein-protein interactions by docking methods. Curr. Opin. Struct. Biol. 12:28-35
    • (2002) Curr. Opin. Struct. Biol , vol.12 , pp. 28-35
    • Smith, G.R.1    Sternberg, M.J.2
  • 129
    • 80055113163 scopus 로고    scopus 로고
    • Split-ubiquitin based membrane yeast two-hybrid (MYTH) system: A powerful tool for identifying protein-protein interactions
    • Snider J, Kittanakom S, Curak J, Stagljar I. 2010. Split-ubiquitin based membrane yeast two-hybrid (MYTH) system: a powerful tool for identifying protein-protein interactions. J. Vis. Exp. 36:e1698
    • (2010) J. Vis. Exp , vol.36
    • Snider, J.1    Kittanakom, S.2    Curak, J.3    Stagljar, I.4
  • 131
    • 25144498379 scopus 로고    scopus 로고
    • A human protein-protein interaction network: A resource for annotating the proteome
    • Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, et al. 2005. A human protein-protein interaction network: a resource for annotating the proteome. Cell 122:957-68
    • (2005) Cell , vol.122 , pp. 957-968
    • Stelzl, U.1    Worm, U.2    Lalowski, M.3    Haenig, C.4    Brembeck, F.H.5
  • 133
    • 35748962289 scopus 로고    scopus 로고
    • Tools for visually exploring biological networks
    • Suderman M, Hallett M. 2007. Tools for visually exploring biological networks. Bioinformatics 23:2651-59
    • (2007) Bioinformatics , vol.23 , pp. 2651-2659
    • Suderman, M.1    Hallett, M.2
  • 134
    • 80052475187 scopus 로고    scopus 로고
    • The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed
    • Swatek KN,Graham K, Agrawal GK,Thelen JJ. 2011. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. J. Proteome Res. 10:4076-87
    • (2011) J. Proteome Res , vol.10 , pp. 4076-4087
    • Swatek, K.N.1    Graham, K.2    Agrawal, G.K.3    Thelen, J.J.4
  • 135
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • D568
    • Szklarczyk D, Franceschini A, Kuhn M, SimonovicM, Roth A, et al. 2011. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39:D561-68
    • (2011) Nucleic Acids Res , vol.39
    • Szklarczyk, D.1    Franceschini, A.2    Kuhn, M.3    Simonovic, M.4    Roth, A.5
  • 136
    • 79551629546 scopus 로고    scopus 로고
    • Identification and characterization of nuclear pore complex components in Arabidopsis thaliana
    • Tamura K, Fukao Y, Iwamoto M, Haraguchi T, Hara-Nishimura I. 2010. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Plant Cell 22:4084-97
    • (2010) Plant Cell , vol.22 , pp. 4084-4097
    • Tamura, K.1    Fukao, Y.2    Iwamoto, M.3    Haraguchi, T.4    Hara-Nishimura, I.5
  • 137
    • 57749114788 scopus 로고    scopus 로고
    • Arabidopsis reactome: A foundation knowledgebase for plant systems biology
    • Tsesmetzis N, Couchman M, Higgins J, Smith A, Doonan JH, et al. 2008. Arabidopsis reactome: a foundation knowledgebase for plant systems biology. Plant Cell 20:1426-36
    • (2008) Plant Cell , vol.20 , pp. 1426-1436
    • Tsesmetzis, N.1    Couchman, M.2    Higgins, J.3    Smith, A.4    Doonan, J.H.5
  • 138
    • 4544272781 scopus 로고    scopus 로고
    • Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium
    • Tzfira T, Vaidya M, Citovsky V. 2004. Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium. Nature 431:87-92
    • (2004) Nature , vol.431 , pp. 87-92
    • Tzfira, T.1    Vaidya, M.2    Citovsky, V.3
  • 139
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of proteinprotein interactions in Saccharomyces cerevisiae
    • Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, et al. 2000. A comprehensive analysis of proteinprotein interactions in Saccharomyces cerevisiae. Nature 403:623-27
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4    Judson, R.S.5
  • 141
    • 79960707004 scopus 로고    scopus 로고
    • Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification
    • Van Leene J, Eeckhout D, Persiau G, Van De Slijke E, Geerinck J, et al. 2011. Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification. Methods Mol. Biol. 754:195-218
    • (2011) Methods Mol. Biol , vol.754 , pp. 195-218
    • Van Leene, J.1    Eeckhout, D.2    Persiau, G.3    Van De Slijke, E.4    Geerinck, J.5
  • 142
    • 77955608634 scopus 로고    scopus 로고
    • Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana
    • Van Leene J, Hollunder J, Eeckhout D, Persiau G, Van De Slijke E, et al. 2010. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Mol. Syst. Biol. 6:397
    • (2010) Mol. Syst. Biol , vol.6 , pp. 397
    • Van Leene, J.1    Hollunder, J.2    Eeckhout, D.3    Persiau, G.4    Van De Slijke, E.5
  • 143
    • 34547137389 scopus 로고    scopus 로고
    • A tandem affinity purificationbased technology platform to study the cell cycle interactome in Arabidopsis thaliana
    • Van Leene J, Stals H, Eeckhout D, Persiau G, Van De Slijke E, et al. 2007. A tandem affinity purificationbased technology platform to study the cell cycle interactome in Arabidopsis thaliana. Mol. Cell. Proteomics 6:1226-38
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1226-1238
    • Van Leene, J.1    Stals, H.2    Eeckhout, D.3    Persiau, G.4    Van De Slijke, E.5
  • 144
    • 53149142072 scopus 로고    scopus 로고
    • Boosting tandem affinity purification of plant protein complexes
    • Van Leene J,Witters E, Inze D, De Jaeger G. 2008. Boosting tandem affinity purification of plant protein complexes. Trends Plant Sci. 13:517-20
    • (2008) Trends Plant Sci , vol.13 , pp. 517-520
    • Van Leene, J.1    Witters, E.2    Inze, D.3    De Jaeger, G.4
  • 147
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabasi AL. 2011. Interactome networks and human disease. Cell 144:986-98
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 148
    • 54349105689 scopus 로고    scopus 로고
    • Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta
    • Waadt R, Schmidt LK, Lohse M, Hashimoto K, Bock R, Kudla J. 2008. Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J. 56:505-16
    • (2008) Plant J , vol.56 , pp. 505-516
    • Waadt, R.1    Schmidt, L.K.2    Lohse, M.3    Hashimoto, K.4    Bock, R.5    Kudla, J.6
  • 149
    • 0034614678 scopus 로고    scopus 로고
    • Protein interaction mapping in C. elegans using proteins involved in vulval development
    • Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF, et al. 2000. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287:116-22
    • (2000) Science , vol.287 , pp. 116-122
    • Walhout, A.J.1    Sordella, R.2    Lu, X.3    Hartley, J.L.4    Temple, G.F.5
  • 150
    • 7044229949 scopus 로고    scopus 로고
    • Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation
    • Walter M, Chaban C, Schutze K, Batistic O, Weckermann K, et al. 2004. Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40:428-38
    • (2004) Plant J , vol.40 , pp. 428-438
    • Walter, M.1    Chaban, C.2    Schutze, K.3    Batistic, O.4    Weckermann, K.5
  • 151
    • 35148836122 scopus 로고    scopus 로고
    • In planta ORFeome analysis by large-scale over-expression of GATEWAY-compatible cDNA clones: Screening of ERF transcription factors involved in abiotic stress defense
    • Weiste C, Iven T, Fischer U, Onate-Sanchez L, Droge-Laser W. 2007. In planta ORFeome analysis by large-scale over-expression of GATEWAY-compatible cDNA clones: screening of ERF transcription factors involved in abiotic stress defense. Plant J. 52:382-90
    • (2007) Plant J , vol.52 , pp. 382-390
    • Weiste, C.1    Iven, T.2    Fischer, U.3    Onate-Sanchez, L.4    Droge-Laser, W.5
  • 152
    • 0029790263 scopus 로고    scopus 로고
    • The yeast two-hybrid system: Forward and reverse
    • White MA. 1996. The yeast two-hybrid system: forward and reverse. Proc. Natl. Acad. Sci. USA 93:10001-3
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10001-10003
    • White, M.A.1
  • 154
    • 78149328398 scopus 로고    scopus 로고
    • Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana
    • Xu F, Li G, Zhao C, Li Y, Li P, et al. 2010. Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana. BMC Genomics 11(Suppl. 2):S2
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 2
    • Xu, F.1    Li, G.2    Zhao, C.3    Li, Y.4    Li, P.5
  • 155
    • 34547147089 scopus 로고    scopus 로고
    • Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues
    • Xu X, Soutto M, Xie Q, Servick S, Subramanian C, et al. 2007. Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues. Proc. Natl. Acad. Sci. USA 104:10264-69
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 10264-10269
    • Xu, X.1    Soutto, M.2    Xie, Q.3    Servick, S.4    Subramanian, C.5
  • 156
    • 0242300620 scopus 로고    scopus 로고
    • Empirical analysis of transcriptional activity in the Arabidopsis genome
    • Yamada K, Lim J, Dale JM, Chen H, Shinn P, et al. 2003. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302:842-46
    • (2003) Science , vol.302 , pp. 842-846
    • Yamada, K.1    Lim, J.2    Dale, J.M.3    Chen, H.4    Shinn, P.5
  • 157
    • 1342346597 scopus 로고    scopus 로고
    • Purification of the Arabidopsis 26 S proteasome: Biochemical and molecular analyses revealed the presence of multiple isoforms
    • Yang PZ, FuHY, Walker J, PapaCM,Smalle J, et al. 2004. Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. J. Biol. Chem. 279:6401-13
    • (2004) J. Biol. Chem , vol.279 , pp. 6401-6413
    • Yang, P.Z.1    Fu, H.Y.2    Walker, J.3    Papa, C.M.4    Smalle, J.5
  • 158
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. 2008. High-quality binary protein interaction map of the yeast interactome network. Science 322:104-10
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1    Braun, P.2    Yildirim, M.A.3    Lemmens, I.4    Venkatesan, K.5
  • 159
    • 79957874673 scopus 로고    scopus 로고
    • Next-generation sequencing to generate interactome datasets
    • Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, et al. 2011. Next-generation sequencing to generate interactome datasets. Nat. Methods 8:478-80
    • (2011) Nat. Methods , vol.8 , pp. 478-480
    • Yu, H.1    Tardivo, L.2    Tam, S.3    Weiner, E.4    Gebreab, F.5
  • 160
    • 83055182119 scopus 로고    scopus 로고
    • Categorizing biases in high-confidence high-throughput protein-protein interaction data sets
    • Yu X, Ivanic J, Memisevic V, Wallqvist A, Reifman J. 2011. Categorizing biases in high-confidence high-throughput protein-protein interaction data sets. Mol. Cell. Proteomics 10:M111.012500
    • (2011) Mol. Cell. Proteomics , vol.10
    • Yu, X.1    Ivanic, J.2    Memisevic, V.3    Wallqvist, A.4    Reifman, J.5
  • 161
    • 0242653772 scopus 로고    scopus 로고
    • Development of a system for the study of protein-protein interactions in planta: Characterization of a TATA-box binding protein complex in Oryza sativa
    • Zhong J, Haynes PA, Zhang S, Yang X, Andon NL, et al. 2003. Development of a system for the study of protein-protein interactions in planta: characterization of a TATA-box binding protein complex in Oryza sativa. J. Proteome Res. 2:514-22
    • (2003) J. Proteome Res , vol.2 , pp. 514-522
    • Zhong, J.1    Haynes, P.A.2    Zhang, S.3    Yang, X.4    Andon, N.L.5
  • 162
    • 84255192133 scopus 로고    scopus 로고
    • Computational identification of protein-protein interactions in rice based on the predicted rice interactome network
    • Zhu P,GuH, Jiao Y, HuangD, ChenM. 2011. Computational identification of protein-protein interactions in rice based on the predicted rice interactome network. Genomics Proteomics Bioinforma. 9:128-37
    • (2011) Genomics Proteomics Bioinforma , vol.9 , pp. 128-137
    • Zhu, P.1    Gu, H.2    Jiao, Y.3    Huang, D.4    Chen, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.