-
1
-
-
13444273448
-
The universal protein resource (UniProt)
-
Bairoch, A. et al. (2005) The universal protein resource (UniProt). Nucleic Acids Res., 33, 154-159.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 154-159
-
-
Bairoch, A.1
-
2
-
-
33947328242
-
Choosing negative examples for the prediction of proteinprotein interactions
-
Ben-Hur, A. et al. (2006) Choosing negative examples for the prediction of proteinprotein interactions. BMC Bioinformatics, 7 (Suppl. 1), S2.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 1
-
-
Ben-Hur, A.1
-
3
-
-
34447630272
-
An improved method for identifying functionally linked proteins using phylogenetic profiles
-
Cokus, S. et al. (2007) An improved method for identifying functionally linked proteins using phylogenetic profiles. BMC Bioinformatics, 8 (Suppl. 4), S7.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 4
-
-
Cokus, S.1
-
4
-
-
0041358614
-
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages
-
Date, S. et al. (2003) Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages. Nat. Biotechnol., 21, 1055-1062.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1055-1062
-
-
Date, S.1
-
5
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A. J. et al. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
-
6
-
-
0031610846
-
Constructing multigenome views of whole microbial genomes
-
Gaasterland, T. et al. (1998) Constructing multigenome views of whole microbial genomes. Microb. Comp. Genomics, 3, 177-192.
-
(1998)
Microb. Comp. Genomics
, vol.3
, pp. 177-192
-
-
Gaasterland, T.1
-
7
-
-
0000135182
-
Anote on Boltzmann tournament selection for genetic algorithms and population-oriented simulated annealing
-
Goldberg, D. E. (1990)Anote on Boltzmann tournament selection for genetic algorithms and population-oriented simulated annealing. Complex Syst., 4, 445-460.
-
(1990)
Complex Syst
, vol.4
, pp. 445-460
-
-
Goldberg, D.E.1
-
8
-
-
0002819121
-
A comparative analysis of selection schemes used in genetic algorithms
-
Goldberg, D. E. et al. (1991) A comparative analysis of selection schemes used in genetic algorithms. Found. Genet. Algorith., 1, 69-93.
-
(1991)
Found. Genet. Algorith.
, vol.1
, pp. 69-93
-
-
Goldberg, D.E.1
-
9
-
-
80052581482
-
Selection of organisms for the co-evolution-based study of protein interactions
-
Herman, D. et al. (2011) Selection of organisms for the co-evolution-based study of protein interactions. BMC Bioinformatics, 12, 363.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 363
-
-
Herman, D.1
-
11
-
-
58149193234
-
STRING 8 - a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L. J. et al. (2009) STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res., 37, 412-416.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 412-416
-
-
Jensen, L.J.1
-
12
-
-
34347374679
-
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment
-
Jothi, R. et al. (2007) Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. BMC Bioinformatics, 8, 173.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 173
-
-
Jothi, R.1
-
13
-
-
38349087234
-
Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling
-
Karimpour-Fard, A. et al. (2007) Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling. BMC Genomics, 8, 393.
-
(2007)
BMC Genomics
, vol.8
, pp. 393
-
-
Karimpour-Fard, A.1
-
14
-
-
33646171940
-
Identifying metabolic enzymes with multiple types of association evidence
-
Kharchenko, P. et al. (2006) Identifying metabolic enzymes with multiple types of association evidence. BMC Bioinformatics, 7, 177.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 177
-
-
Kharchenko, P.1
-
15
-
-
0038620469
-
Integrative approach for computationally inferring protein domain interactions
-
Ng, S. K. et al. (2003) Integrative approach for computationally inferring protein domain interactions. Bioinformatics, 19, 923-929.
-
(2003)
Bioinformatics
, vol.19
, pp. 923-929
-
-
Ng, S.K.1
-
16
-
-
0033551248
-
Assigning protein functions by comparative genome analysis protein phylogenetic profiles
-
Pellegrini, M. et al. (1999) Assigning protein functions by comparative genome analysis protein phylogenetic profiles. Proc. Natl Acad. Sci. USA, 96, 4285-4288.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
-
17
-
-
71549149672
-
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
-
Ruano-Rubio, V. et al. (2009) Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinformatics, 10, 383.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 383
-
-
Ruano-Rubio, V.1
-
18
-
-
48249103069
-
Testing the accuracy of eukaryotic phylogenetic profiles for prediction of biological function
-
Singh, S. et al. (2008) Testing the accuracy of eukaryotic phylogenetic profiles for prediction of biological function. Evol. Bioinformatics Online, 4, 217-223.
-
(2008)
Evol. Bioinformatics Online
, vol.4
, pp. 217-223
-
-
Singh, S.1
-
19
-
-
33749608410
-
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
-
Snitkin, E. S. et al. (2006) Comparative assessment of performance and genome dependence among phylogenetic profiling methods. BMC Bioinformatics, 7, 420.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 420
-
-
Snitkin, E.S.1
-
20
-
-
24044546509
-
Refined phylogenetic profiles method for predicting protein-protein interactions
-
Sun, J. et al. (2005) Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics, 21, 3409-3415.
-
(2005)
Bioinformatics
, vol.21
, pp. 3409-3415
-
-
Sun, J.1
-
21
-
-
33846157711
-
Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms? Biochem
-
Sun, J. et al. (2007) Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms? Biochem. Biophys. Res., 353, 985-991.
-
(2007)
Biophys. Res.
, vol.353
, pp. 985-991
-
-
Sun, J.1
-
22
-
-
0002881568
-
Uniform crossover in genetic algorithms
-
Morgan Kaufmann Publishers Inc., San Francisco, CA, USA
-
Syswerda, G. (1989) Uniform crossover in genetic algorithms. In Proceedings of the Third International Conference on Genetic Algorithms. Morgan Kaufmann Publishers Inc., San Francisco, CA, USA, pp. 2-9.
-
(1989)
Proceedings of the Third International Conference on Genetic Algorithms
, pp. 2-9
-
-
Syswerda, G.1
-
23
-
-
13444249988
-
STRING: known and predicted protein-protein associations, integrated and transferred across organisms
-
von Mering, C. et al. (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res., 33, 433-437.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 433-437
-
-
von Mering, C.1
-
24
-
-
0042889111
-
Identification of functional links between genes using phylogenetic profiles
-
Wu, J. et al. (2003) Identification of functional links between genes using phylogenetic profiles. Bioinformatics, 19, 1524-1530.
-
(2003)
Bioinformatics
, vol.19
, pp. 1524-1530
-
-
Wu, J.1
|