메뉴 건너뛰기




Volumn 101, Issue 5, 2013, Pages 263-272

Gene expression analysis uncovers novel hedgehog interacting protein (HHIP) effects in human bronchial epithelial cells

(21)  Zhou, Xiaobo a,b   Qiu, Weiliang a,b   Sathirapongsasuti, J Fah c,d   Cho, Michael H a,b   Mancini, John D a,b   Lao, Taotao a,b   Thibault, Derek M a,b   Litonjua, Augusto A a,b   Bakke, Per S e,f   Gulsvik, Amund e,f   Lomas, David A g   Beaty, Terri H h   Hersh, Craig P a,b   Anderson, Christopher a,b   Geigenmuller, Ute a,b   Raby, Benjamin A a,b   Rennard, Stephen I i   Perrella, Mark A a,b   Choi, Augustine M K a,b   Quackenbush, John c,d   more..


Author keywords

COPD (Chronic obstructive pulmonary disease); Extracellular matrix (ECM); Gene expression profiling; Hedgehog interacting protein (HHIP); Network modeling

Indexed keywords

SHORT HAIRPIN RNA;

EID: 84876418514     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.02.010     Document Type: Article
Times cited : (38)

References (50)
  • 1
    • 60249086665 scopus 로고    scopus 로고
    • Division of Vital Statistics: Deaths: Preliminary Data for 2008
    • (2010/12/09 edition)
    • Miniño Arialdi M., Kochanek Kenneth D. Division of Vital Statistics: Deaths: Preliminary Data for 2008. National Vital Statistics Reports 2010, vol. 59:1-72. (2010/12/09 edition).
    • (2010) National Vital Statistics Reports , vol.59 , pp. 1-72
    • Miniño, A.M.1    Kochanek, K.D.2
  • 4
    • 79953681020 scopus 로고    scopus 로고
    • Fibrotic response of tissue remodeling in COPD
    • Salazar L.M., Herrera A.M. Fibrotic response of tissue remodeling in COPD. Lung 2011, 189:101-109.
    • (2011) Lung , vol.189 , pp. 101-109
    • Salazar, L.M.1    Herrera, A.M.2
  • 5
    • 43049092274 scopus 로고    scopus 로고
    • Metalloproteinases and their inhibitors: regulators of wound healing
    • Gill S.E., Parks W.C. Metalloproteinases and their inhibitors: regulators of wound healing. Int. J. Biochem. Cell Biol. 2008, 40:1334-1347.
    • (2008) Int. J. Biochem. Cell Biol. , vol.40 , pp. 1334-1347
    • Gill, S.E.1    Parks, W.C.2
  • 6
    • 63449101907 scopus 로고    scopus 로고
    • A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci
    • Pillai S.G., Ge D., Zhu G., Kong X., Shianna K.V., Need A.C., Feng S., Hersh C.P., Bakke P., Gulsvik A., et al. A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci. PLoS Genet. 2009, 5:e1000421.
    • (2009) PLoS Genet. , vol.5
    • Pillai, S.G.1    Ge, D.2    Zhu, G.3    Kong, X.4    Shianna, K.V.5    Need, A.C.6    Feng, S.7    Hersh, C.P.8    Bakke, P.9    Gulsvik, A.10
  • 13
    • 0033580269 scopus 로고    scopus 로고
    • Vertebrate Hedgehog signalling modulated by induction of a Hedgehog-binding protein
    • Chuang P.T., McMahon A.P. Vertebrate Hedgehog signalling modulated by induction of a Hedgehog-binding protein. Nature 1999, 397:617-621.
    • (1999) Nature , vol.397 , pp. 617-621
    • Chuang, P.T.1    McMahon, A.P.2
  • 14
  • 15
    • 0037314331 scopus 로고    scopus 로고
    • Feedback control of mammalian Hedgehog signaling by the Hedgehog-binding protein, Hip1, modulates Fgf signaling during branching morphogenesis of the lung
    • Chuang P.T., Kawcak T., McMahon A.P. Feedback control of mammalian Hedgehog signaling by the Hedgehog-binding protein, Hip1, modulates Fgf signaling during branching morphogenesis of the lung. Genes Dev. 2003, 17:342-347.
    • (2003) Genes Dev. , vol.17 , pp. 342-347
    • Chuang, P.T.1    Kawcak, T.2    McMahon, A.P.3
  • 16
    • 34848914038 scopus 로고    scopus 로고
    • Capturing heterogeneity in gene expression studies by surrogate variable analysis
    • Leek J.T., Storey J.D. Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genet. 2007, 3:1724-1735.
    • (2007) PLoS Genet. , vol.3 , pp. 1724-1735
    • Leek, J.T.1    Storey, J.D.2
  • 17
    • 79957851822 scopus 로고    scopus 로고
    • Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies
    • Teschendorff A.E., Zhuang J., Widschwendter M. Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies. Bioinformatics 2011, 27:1496-1505.
    • (2011) Bioinformatics , vol.27 , pp. 1496-1505
    • Teschendorff, A.E.1    Zhuang, J.2    Widschwendter, M.3
  • 20
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 21
    • 47549107689 scopus 로고    scopus 로고
    • GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
    • Mostafavi S., Ray D., Warde-Farley D., Grouios C., Morris Q. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol. 2008, 9(Suppl. 1):S4.
    • (2008) Genome Biol. , vol.9 , Issue.SUPPL. 1
    • Mostafavi, S.1    Ray, D.2    Warde-Farley, D.3    Grouios, C.4    Morris, Q.5
  • 22
    • 79956308325 scopus 로고    scopus 로고
    • Mechanisms and functions of Hedgehog signalling across the metazoa
    • Ingham P.W., Nakano Y., Seger C. Mechanisms and functions of Hedgehog signalling across the metazoa. Nat. Rev. Genet. 2011, 12:393-406.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 393-406
    • Ingham, P.W.1    Nakano, Y.2    Seger, C.3
  • 23
    • 77951625909 scopus 로고    scopus 로고
    • Gli2 influences proliferation in the developing lung through regulation of cyclin expression
    • Rutter M., Wang J., Huang Z., Kuliszewski M., Post M. Gli2 influences proliferation in the developing lung through regulation of cyclin expression. Am. J. Respir. Cell Mol. Biol. 2010, 42:615-625.
    • (2010) Am. J. Respir. Cell Mol. Biol. , vol.42 , pp. 615-625
    • Rutter, M.1    Wang, J.2    Huang, Z.3    Kuliszewski, M.4    Post, M.5
  • 24
    • 84856713410 scopus 로고    scopus 로고
    • Novel regulation of fibroblast growth factor 2 (FGF2)-mediated cell growth by polysialic acid
    • Ono S., Hane M., Kitajima K., Sato C. Novel regulation of fibroblast growth factor 2 (FGF2)-mediated cell growth by polysialic acid. J. Biol. Chem. 2012, 287:3710-3722.
    • (2012) J. Biol. Chem. , vol.287 , pp. 3710-3722
    • Ono, S.1    Hane, M.2    Kitajima, K.3    Sato, C.4
  • 25
    • 84856905433 scopus 로고    scopus 로고
    • Role of the apoptotic and mitotic regulator survivin in melanoma
    • McKenzie J.A., Grossman D. Role of the apoptotic and mitotic regulator survivin in melanoma. Anticancer Res. 2012, 32:397-404.
    • (2012) Anticancer Res. , vol.32 , pp. 397-404
    • McKenzie, J.A.1    Grossman, D.2
  • 26
    • 77953230937 scopus 로고    scopus 로고
    • A genome-wide RNA interference screen reveals an essential CREB3L2-ATF5-MCL1 survival pathway in malignant glioma with therapeutic implications
    • Sheng Z., Li L., Zhu L.J., Smith T.W., Demers A., Ross A.H., Moser R.P., Green M.R. A genome-wide RNA interference screen reveals an essential CREB3L2-ATF5-MCL1 survival pathway in malignant glioma with therapeutic implications. Nat. Med. 2010, 16:671-677.
    • (2010) Nat. Med. , vol.16 , pp. 671-677
    • Sheng, Z.1    Li, L.2    Zhu, L.J.3    Smith, T.W.4    Demers, A.5    Ross, A.H.6    Moser, R.P.7    Green, M.R.8
  • 27
    • 79953203956 scopus 로고    scopus 로고
    • BCL-2 is a downstream target of ATF5 that mediates the prosurvival function of ATF5 in a cell type-dependent manner
    • Dluzen D., Li G., Tacelosky D., Moreau M., Liu D.X. BCL-2 is a downstream target of ATF5 that mediates the prosurvival function of ATF5 in a cell type-dependent manner. J. Biol. Chem. 2011, 286:7705-7713.
    • (2011) J. Biol. Chem. , vol.286 , pp. 7705-7713
    • Dluzen, D.1    Li, G.2    Tacelosky, D.3    Moreau, M.4    Liu, D.X.5
  • 29
    • 0242669237 scopus 로고    scopus 로고
    • Hedgehog signalling within airway epithelial progenitors and in small-cell lung cancer
    • Watkins D.N., Berman D.M., Burkholder S.G., Wang B., Beachy P.A., Baylin S.B. Hedgehog signalling within airway epithelial progenitors and in small-cell lung cancer. Nature 2003, 422:313-317.
    • (2003) Nature , vol.422 , pp. 313-317
    • Watkins, D.N.1    Berman, D.M.2    Burkholder, S.G.3    Wang, B.4    Beachy, P.A.5    Baylin, S.B.6
  • 32
    • 77956814604 scopus 로고    scopus 로고
    • Interactions between Hedgehog proteins and their binding partners come into view
    • Beachy P.A., Hymowitz S.G., Lazarus R.A., Leahy D.J., Siebold C. Interactions between Hedgehog proteins and their binding partners come into view. Genes Dev. 2010, 24(18):2001-2012.
    • (2010) Genes Dev. , vol.24 , Issue.18 , pp. 2001-2012
    • Beachy, P.A.1    Hymowitz, S.G.2    Lazarus, R.A.3    Leahy, D.J.4    Siebold, C.5
  • 33
    • 65449156373 scopus 로고    scopus 로고
    • Mouse hitchhiker mutants have spina bifida, dorso-ventral patterning defects and polydactyly: identification of Tulp3 as a novel negative regulator of the Sonic hedgehog pathway
    • Patterson V.L., Damrau C., Paudyal A., Reeve B., Grimes D.T., Stewart M.E., Williams D.J., Siggers P., Greenfield A., Murdoch J.N. Mouse hitchhiker mutants have spina bifida, dorso-ventral patterning defects and polydactyly: identification of Tulp3 as a novel negative regulator of the Sonic hedgehog pathway. Hum. Mol. Genet. 2009, 18:1719-1739.
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 1719-1739
    • Patterson, V.L.1    Damrau, C.2    Paudyal, A.3    Reeve, B.4    Grimes, D.T.5    Stewart, M.E.6    Williams, D.J.7    Siggers, P.8    Greenfield, A.9    Murdoch, J.N.10
  • 34
    • 79956219871 scopus 로고    scopus 로고
    • Hypoxia activates the hedgehog signaling pathway in a ligand-independent manner by upregulation of Smo transcription in pancreatic cancer
    • Onishi H., Kai M., Odate S., Iwasaki H., Morifuji Y., Ogino T., Morisaki T., Nakashima Y., Katano M. Hypoxia activates the hedgehog signaling pathway in a ligand-independent manner by upregulation of Smo transcription in pancreatic cancer. Cancer Sci. 2011, 102:1144-1150.
    • (2011) Cancer Sci. , vol.102 , pp. 1144-1150
    • Onishi, H.1    Kai, M.2    Odate, S.3    Iwasaki, H.4    Morifuji, Y.5    Ogino, T.6    Morisaki, T.7    Nakashima, Y.8    Katano, M.9
  • 35
    • 81855183838 scopus 로고    scopus 로고
    • Sonic Hedgehog activates the GTPases Rac1 and RhoA in a Gli-independent manner through coupling of smoothened to Gi proteins
    • Polizio A.H., Chinchilla P., Chen X., Manning D.R., Riobo N.A. Sonic Hedgehog activates the GTPases Rac1 and RhoA in a Gli-independent manner through coupling of smoothened to Gi proteins. Sci. Signal. 2011, 4:pt7.
    • (2011) Sci. Signal. , vol.4
    • Polizio, A.H.1    Chinchilla, P.2    Chen, X.3    Manning, D.R.4    Riobo, N.A.5
  • 36
    • 79952107602 scopus 로고    scopus 로고
    • Syndecans as cell surface receptors: unique structure equates with functional diversity
    • Choi Y., Chung H., Jung H., Couchman J.R., Oh E.S. Syndecans as cell surface receptors: unique structure equates with functional diversity. Matrix Biol. 2011, 30:93-99.
    • (2011) Matrix Biol. , vol.30 , pp. 93-99
    • Choi, Y.1    Chung, H.2    Jung, H.3    Couchman, J.R.4    Oh, E.S.5
  • 37
    • 70449468813 scopus 로고    scopus 로고
    • Syndecan-1 shedding facilitates the resolution of neutrophilic inflammation by removing sequestered CXC chemokines
    • Hayashida K., Parks W.C., Park P.W. Syndecan-1 shedding facilitates the resolution of neutrophilic inflammation by removing sequestered CXC chemokines. Blood 2009, 114:3033-3043.
    • (2009) Blood , vol.114 , pp. 3033-3043
    • Hayashida, K.1    Parks, W.C.2    Park, P.W.3
  • 39
    • 0038408486 scopus 로고    scopus 로고
    • Histone deacetylase inhibitor up-regulates RECK to inhibit MMP-2 activation and cancer cell invasion
    • Liu L.T., Chang H.C., Chiang L.C., Hung W.C. Histone deacetylase inhibitor up-regulates RECK to inhibit MMP-2 activation and cancer cell invasion. Cancer Res. 2003, 63:3069-3072.
    • (2003) Cancer Res. , vol.63 , pp. 3069-3072
    • Liu, L.T.1    Chang, H.C.2    Chiang, L.C.3    Hung, W.C.4
  • 41
    • 60649086817 scopus 로고    scopus 로고
    • RECK negatively regulates matrix metalloproteinase-9 transcription
    • Takagi S., Simizu S., Osada H. RECK negatively regulates matrix metalloproteinase-9 transcription. Cancer Res. 2009, 69:1502-1508.
    • (2009) Cancer Res. , vol.69 , pp. 1502-1508
    • Takagi, S.1    Simizu, S.2    Osada, H.3
  • 44
    • 0038070219 scopus 로고    scopus 로고
    • Alveolar wall apoptosis causes lung destruction and emphysematous changes
    • Aoshiba K., Yokohori N., Nagai A. Alveolar wall apoptosis causes lung destruction and emphysematous changes. Am. J. Respir. Cell Mol. Biol. 2003, 28:555-562.
    • (2003) Am. J. Respir. Cell Mol. Biol. , vol.28 , pp. 555-562
    • Aoshiba, K.1    Yokohori, N.2    Nagai, A.3
  • 45
    • 84876409770 scopus 로고    scopus 로고
    • Fibroblast growth factor-2 and the HIV-1 Tat protein synergize in promoting Bcl-2 expression and preventing endothelial cell apoptosis: implications for the pathogenesis of AIDS-associated kaposi's sarcoma
    • Sgadari C., Barillari G., Palladino C., Bellino S., Taddeo B., Toschi E., Ensoli B. Fibroblast growth factor-2 and the HIV-1 Tat protein synergize in promoting Bcl-2 expression and preventing endothelial cell apoptosis: implications for the pathogenesis of AIDS-associated kaposi's sarcoma. Int. J. Vasc. Med. 2011, 2011:452729.
    • (2011) Int. J. Vasc. Med. , vol.2011 , pp. 452729
    • Sgadari, C.1    Barillari, G.2    Palladino, C.3    Bellino, S.4    Taddeo, B.5    Toschi, E.6    Ensoli, B.7
  • 46
    • 58149473268 scopus 로고    scopus 로고
    • Involvement of Bcl-2 family in apoptosis and signal pathways induced by cigarette smoke extract in the human airway smooth muscle cells
    • Hu W., Xie J., Zhao J., Xu Y., Yang S., Ni W. Involvement of Bcl-2 family in apoptosis and signal pathways induced by cigarette smoke extract in the human airway smooth muscle cells. DNA Cell Biol. 2009, 28:13-22.
    • (2009) DNA Cell Biol. , vol.28 , pp. 13-22
    • Hu, W.1    Xie, J.2    Zhao, J.3    Xu, Y.4    Yang, S.5    Ni, W.6
  • 47
    • 33646561254 scopus 로고    scopus 로고
    • Immunohistochemical detection of apoptotic proteins, p53/Bax and JNK/FasL cascade, in the lung of rats exposed to cigarette smoke
    • Wu C.H., Lin H.H., Yan F.P., Wang C.J. Immunohistochemical detection of apoptotic proteins, p53/Bax and JNK/FasL cascade, in the lung of rats exposed to cigarette smoke. Arch. Toxicol. 2006, 80:328-336.
    • (2006) Arch. Toxicol. , vol.80 , pp. 328-336
    • Wu, C.H.1    Lin, H.H.2    Yan, F.P.3    Wang, C.J.4
  • 49
    • 55949124308 scopus 로고    scopus 로고
    • Kinase requirements in human cells: II. Genetic interaction screens identify kinase requirements following HPV16 E7 expression in cancer cells
    • Baldwin A., Li W., Grace M., Pearlberg J., Harlow E., Munger K., Grueneberg D.A. Kinase requirements in human cells: II. Genetic interaction screens identify kinase requirements following HPV16 E7 expression in cancer cells. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:16478-16483.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 16478-16483
    • Baldwin, A.1    Li, W.2    Grace, M.3    Pearlberg, J.4    Harlow, E.5    Munger, K.6    Grueneberg, D.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.