-
1
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M. and Workman, J.L. (2007) The role of chromatin during transcription. Cell, 128, 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
2
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell, 128, 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
3
-
-
61349098460
-
Differential chromatin marking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz, P., Down, T., Latorre, I., Liu, T., Liu, X.S. and Ahringer, J. (2009) Differential chromatin marking of introns and expressed exons by H3K36me3. Nat. Genet., 41, 376-381.
-
(2009)
Nat. Genet.
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
4
-
-
70350013550
-
Biased chromatin signatures around polyadenylation sites and exons
-
Spies, N., Nielsen, C.B., Padgett, R.A. and Burge, C.B. (2009) Biased chromatin signatures around polyadenylation sites and exons. Mol. Cell, 36, 245-254.
-
(2009)
Mol. Cell
, vol.36
, pp. 245-254
-
-
Spies, N.1
Nielsen, C.B.2
Padgett, R.A.3
Burge, C.B.4
-
5
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco, R.F., Pan, Q., Tominaga, K., Blencowe, B.J., Pereira-Smith, O.M. and Misteli, T. (2010) Regulation of alternative splicing by histone modifications. Science, 327, 996-1000.
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
Misteli, T.6
-
6
-
-
80052445151
-
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36
-
de Almeida, S.F., Grosso, A.R., Koch, F., Fenouil, R., Carvalho, S., Andrade, J., Levezinho, H., Gut, M., Eick, D., Gut, I. et al. (2011) Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36. Nat. Struct. Mol. Biol., 18, 977-983.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 977-983
-
-
De Almeida, S.F.1
Grosso, A.R.2
Koch, F.3
Fenouil, R.4
Carvalho, S.5
Andrade, J.6
Levezinho, H.7
Gut, M.8
Eick, D.9
Gut, I.10
-
7
-
-
80052020631
-
Pre-mRNA splicing is a determinant of histone H3K36 methylation
-
Kim, S., Kim, H., Fong, N., Erickson, B. and Bentley, D.L. (2011) Pre-mRNA splicing is a determinant of histone H3K36 methylation. Proc. Natl Acad. Sci. USA, 108, 13564-13569.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 13564-13569
-
-
Kim, S.1
Kim, H.2
Fong, N.3
Erickson, B.4
Bentley, D.L.5
-
8
-
-
84861925259
-
Design principles of interconnections between chromatin and pre-mRNA splicing
-
de Almeida, S.F. and Carmo-Fonseca, M. (2012) Design principles of interconnections between chromatin and pre-mRNA splicing. Trends Biochem. Sci., 37, 248-253.
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 248-253
-
-
De Almeida, S.F.1
Carmo-Fonseca, M.2
-
9
-
-
0036170767
-
Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression
-
Strahl, B.D., Grant, P.A., Briggs, S.D., Sun, Z.W., Bone, J.R., Caldwell, J.A., Mollah, S., Cook, R.G., Shabanowitz, J., Hunt, D.F. et al. (2002) Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Mol. Cell Biol., 22, 1298-1306.
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 1298-1306
-
-
Strahl, B.D.1
Grant, P.A.2
Briggs, S.D.3
Sun, Z.W.4
Bone, J.R.5
Caldwell, J.A.6
Mollah, S.7
Cook, R.G.8
Shabanowitz, J.9
Hunt, D.F.10
-
10
-
-
27444436367
-
Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase
-
Sun, X.J., Wei, J., Wu, X.Y., Hu, M., Wang, L., Wang, H.H., Zhang, Q.H., Chen, S.J., Huang, Q.H. and Chen, Z. (2005) Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase. J. Biol. Chem., 280, 35261-35271.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 35261-35271
-
-
Sun, X.J.1
Wei, J.2
Wu, X.Y.3
Hu, M.4
Wang, L.5
Wang, H.H.6
Zhang, Q.H.7
Chen, S.J.8
Huang, Q.H.9
Chen, Z.10
-
11
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza, M.J., Li, B., Florens, L., Suganuma, T., Swanson, S.K., Lee, K.K., Shia, W.J., Anderson, S., Yates, J., Washburn, M.P. et al. (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell, 123, 581-592.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
-
12
-
-
29144468972
-
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
-
Joshi, A.A. and Struhl, K. (2005) Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell, 20, 971-978.
-
(2005)
Mol. Cell
, vol.20
, pp. 971-978
-
-
Joshi, A.A.1
Struhl, K.2
-
13
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh, M.C., Kurdistani, S.K., Morris, S.A., Ahn, S.H., Podolny, V., Collins, S.R., Schuldiner, M., Chin, K., Punna, T., Thompson, N.J. et al. (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell, 123, 593-605.
-
(2005)
Cell
, vol.123
, pp. 593-605
-
-
Keogh, M.C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
-
14
-
-
16244384503
-
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
-
Kizer, K.O., Phatnani, H.P., Shibata, Y., Hall, H., Greenleaf, A.L. and Strahl, B.D. (2005) A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol. Cell Biol., 25, 3305-3316.
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 3305-3316
-
-
Kizer, K.O.1
Phatnani, H.P.2
Shibata, Y.3
Hall, H.4
Greenleaf, A.L.5
Strahl, B.D.6
-
15
-
-
63349106578
-
The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency
-
Lickwar, C.R., Rao, B., Shabalin, A.A., Nobel, A.B., Strahl, B.D. and Lieb, J.D. (2009) The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. PLoS One, 4, e4886.
-
(2009)
PLoS One
, vol.4
-
-
Lickwar, C.R.1
Rao, B.2
Shabalin, A.A.3
Nobel, A.B.4
Strahl, B.D.5
Lieb, J.D.6
-
16
-
-
78449255017
-
DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes
-
Drouin, S., Laramee, L., Jacques, P.E., Forest, A., Bergeron, M. and Robert, F. (2010) DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet., 6, e1001173.
-
(2010)
PLoS Genet.
, vol.6
-
-
Drouin, S.1
Laramee, L.2
Jacques, P.E.3
Forest, A.4
Bergeron, M.5
Robert, F.6
-
17
-
-
77955497472
-
Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes
-
Govind, C.K., Qiu, H., Ginsburg, D.S., Ruan, C., Hofmeyer, K., Hu, C., Swaminathan, V., Workman, J.L., Li, B. and Hinnebusch, A.G. (2010) Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes. Mol. Cell, 39, 234-246.
-
(2010)
Mol. Cell
, vol.39
, pp. 234-246
-
-
Govind, C.K.1
Qiu, H.2
Ginsburg, D.S.3
Ruan, C.4
Hofmeyer, K.5
Hu, C.6
Swaminathan, V.7
Workman, J.L.8
Li, B.9
Hinnebusch, A.G.10
-
18
-
-
38549139593
-
Dynamic histone H3 methylation during gene induction: HYPB/ Setd2 mediates all H3K36 trimethylation
-
Edmunds, J.W., Mahadevan, L.C. and Clayton, A.L. (2008) Dynamic histone H3 methylation during gene induction: HYPB/ Setd2 mediates all H3K36 trimethylation. EMBO J., 27, 406-420.
-
(2008)
EMBO J.
, vol.27
, pp. 406-420
-
-
Edmunds, J.W.1
Mahadevan, L.C.2
Clayton, A.L.3
-
19
-
-
79955008193
-
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription
-
Xie, L., Pelz, C., Wang, W., Bashar, A., Varlamova, O., Shadle, S. and Impey, S. (2011) KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription. EMBO J., 30, 1473-1484.
-
(2011)
EMBO J.
, vol.30
, pp. 1473-1484
-
-
Xie, L.1
Pelz, C.2
Wang, W.3
Bashar, A.4
Varlamova, O.5
Shadle, S.6
Impey, S.7
-
20
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides, G., Wu, W.H., Lane, W.S., Hampsey, M. and Reinberg, D. (1999) The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature, 400, 284-288.
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
21
-
-
84857119549
-
The role of FACT in making and breaking nucleosomes
-
Formosa, T. (2012) The role of FACT in making and breaking nucleosomes. Biochim. Biophys. Acta., 1819, 247-255.
-
(2012)
Biochim. Biophys. Acta.
, vol.1819
, pp. 247-255
-
-
Formosa, T.1
-
22
-
-
56849114880
-
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
-
Cheung, V., Chua, G., Batada, N.N., Landry, C.R., Michnick, S.W., Hughes, T.R. and Winston, F. (2008) Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol., 6, e277.
-
(2008)
PLoS Biol.
, vol.6
-
-
Cheung, V.1
Chua, G.2
Batada, N.N.3
Landry, C.R.4
Michnick, S.W.5
Hughes, T.R.6
Winston, F.7
-
23
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan, C.D., Laprade, L. and Winston, F. (2003) Transcription elongation factors repress transcription initiation from cryptic sites. Science, 301, 1096-1099.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
24
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok, D.K., Harbison, C.T., Levine, S., Cole, M., Hannett, N.M., Lee, T.I., Bell, G.W., Walker, K., Rolfe, P.A., Herbolsheimer, E. et al. (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell, 122, 517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
-
25
-
-
0028090567
-
Physical isolation of nascent RNA chains transcribed by RNA polymerase II: Evidence for cotranscriptional splicing
-
Wuarin, J. and Schibler, U. (1994) Physical isolation of nascent RNA chains transcribed by RNA polymerase II: evidence for cotranscriptional splicing. Mol. Cell Biol., 14, 7219-7225.
-
(1994)
Mol. Cell Biol.
, vol.14
, pp. 7219-7225
-
-
Wuarin, J.1
Schibler, U.2
-
26
-
-
78650445002
-
A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination
-
de Almeida, S.F., Garcia-Sacristan, A., Custodio, N. and Carmo-Fonseca, M. (2010) A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination. Nucleic Acids Res., 38, 8015-8026.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 8015-8026
-
-
De Almeida, S.F.1
Garcia-Sacristan, A.2
Custodio, N.3
Carmo-Fonseca, M.4
-
27
-
-
80455164573
-
Spliceosome assembly is coupled to RNA polymerase II dynamics at the 30 end of human genes
-
Martins, S.B., Rino, J., Carvalho, T., Carvalho, C., Yoshida, M., Klose, J.M., de Almeida, S.F. and Carmo-Fonseca, M. (2011) Spliceosome assembly is coupled to RNA polymerase II dynamics at the 30 end of human genes. Nat. Struct. Mol. Biol., 18, 1115-1123.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1115-1123
-
-
Martins, S.B.1
Rino, J.2
Carvalho, T.3
Carvalho, C.4
Yoshida, M.5
Klose, J.M.6
De Almeida, S.F.7
Carmo-Fonseca, M.8
-
28
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
29
-
-
84859865967
-
The UCSC Genome Browser database: Extensions and updates 2011
-
Dreszer, T.R., Karolchik, D., Zweig, A.S., Hinrichs, A.S., Raney, B.J., Kuhn, R.M., Meyer, L.R., Wong, M., Sloan, C.A., Rosenbloom, K.R. et al. (2012) The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res., 40, D918-D923.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dreszer, T.R.1
Karolchik, D.2
Zweig, A.S.3
Hinrichs, A.S.4
Raney, B.J.5
Kuhn, R.M.6
Meyer, L.R.7
Wong, M.8
Sloan, C.A.9
Rosenbloom, K.R.10
-
30
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M.J., Salzberg, S.L., Wold, B.J. and Pachter, L. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28, 511-515.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
31
-
-
84862020303
-
Micrococcal nuclease-southern blot assay: I. MNase and restriction digestions
-
pdb.prot4890
-
Carey, M. and Smale, S.T. (2007) Micrococcal Nuclease-Southern Blot Assay: I. MNase and Restriction Digestions. CSH Protoc., 2007, pdb.prot4890.
-
(2007)
CSH Protoc.
, vol.2007
-
-
Carey, M.1
Smale, S.T.2
-
32
-
-
46149108345
-
Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci
-
Petesch, S.J. and Lis, J.T. (2008) Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell, 134, 74-84.
-
(2008)
Cell
, vol.134
, pp. 74-84
-
-
Petesch, S.J.1
Lis, J.T.2
-
33
-
-
0035942736
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K. and Tuschl, T. (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature, 411, 494-498.
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendeckel, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
34
-
-
34249874030
-
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
-
Li, B., Gogol, M., Carey, M., Pattenden, S.G., Seidel, C. and Workman, J.L. (2007) Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes Dev., 21, 1422-1430.
-
(2007)
Genes Dev.
, vol.21
, pp. 1422-1430
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Pattenden, S.G.4
Seidel, C.5
Workman, J.L.6
-
35
-
-
0027465862
-
A positive role for histone acetylation in transcription factor access to nucleosomal DNA
-
Lee, D.Y., Hayes, J.J., Pruss, D. and Wolffe, A.P. (1993) A positive role for histone acetylation in transcription factor access to nucleosomal DNA. Cell, 72, 73-84.
-
(1993)
Cell
, vol.72
, pp. 73-84
-
-
Lee, D.Y.1
Hayes, J.J.2
Pruss, D.3
Wolffe, A.P.4
-
36
-
-
23844445184
-
Role of the mammalian RNA polymerase II C-terminal domain (CTD) nonconsensus repeats in CTD stability and cell proliferation
-
Chapman, R.D., Conrad, M. and Eick, D. (2005) Role of the mammalian RNA polymerase II C-terminal domain (CTD) nonconsensus repeats in CTD stability and cell proliferation. Mol. Cell Biol., 25, 7665-7674.
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 7665-7674
-
-
Chapman, R.D.1
Conrad, M.2
Eick, D.3
-
37
-
-
9344225704
-
In vivo degradation of RNA polymerase II largest subunit triggered by alpha-amanitin
-
Nguyen, V.T., Giannoni, F., Dubois, M.F., Seo, S.J., Vigneron, M., Kedinger, C. and Bensaude, O. (1996) In vivo degradation of RNA polymerase II largest subunit triggered by alpha-amanitin. Nucleic Acids Res., 24, 2924-2929.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2924-2929
-
-
Nguyen, V.T.1
Giannoni, F.2
Dubois, M.F.3
Seo, S.J.4
Vigneron, M.5
Kedinger, C.6
Bensaude, O.7
-
38
-
-
80051567157
-
Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development
-
Pal, S., Gupta, R., Kim, H., Wickramasinghe, P., Baubet, V., Showe, L.C., Dahmane, N. and Davuluri, R.V. (2011) Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development. Genome Res., 21, 1260-1272.
-
(2011)
Genome Res.
, vol.21
, pp. 1260-1272
-
-
Pal, S.1
Gupta, R.2
Kim, H.3
Wickramasinghe, P.4
Baubet, V.5
Showe, L.C.6
Dahmane, N.7
Davuluri, R.V.8
-
39
-
-
49349110521
-
Expression of human snRNA genes from beginning to end
-
Egloff, S., O'Reilly, D. and Murphy, S. (2008) Expression of human snRNA genes from beginning to end. Biochem. Soc. Trans., 36, 590-594.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 590-594
-
-
Egloff, S.1
O'Reilly, D.2
Murphy, S.3
-
40
-
-
77951956458
-
Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes
-
Barski, A., Chepelev, I., Liko, D., Cuddapah, S., Fleming, A.B., Birch, J., Cui, K., White, R.J. and Zhao, K. (2010) Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes. Nat. Struct. Mol. Biol., 17, 629-634.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 629-634
-
-
Barski, A.1
Chepelev, I.2
Liko, D.3
Cuddapah, S.4
Fleming, A.B.5
Birch, J.6
Cui, K.7
White, R.J.8
Zhao, K.9
-
41
-
-
29144448731
-
Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1
-
Li, M., Phatnani, H.P., Guan, Z., Sage, H., Greenleaf, A.L. and Zhou, P. (2005) Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1. Proc. Natl Acad. Sci. USA, 102, 17636-17641.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 17636-17641
-
-
Li, M.1
Phatnani, H.P.2
Guan, Z.3
Sage, H.4
Greenleaf, A.L.5
Zhou, P.6
-
42
-
-
33644869317
-
Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription
-
Vojnic, E., Simon, B., Strahl, B.D., Sattler, M. and Cramer, P. (2006) Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J. Biol. Chem., 281, 13-15.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 13-15
-
-
Vojnic, E.1
Simon, B.2
Strahl, B.D.3
Sattler, M.4
Cramer, P.5
-
43
-
-
79955844395
-
The histone chaperone FACT: Structural insights and mechanisms for nucleosome reorganization
-
Winkler, D.D. and Luger, K. (2011) The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization. J. Biol. Chem., 286, 18369-18374.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18369-18374
-
-
Winkler, D.D.1
Luger, K.2
-
44
-
-
68349148027
-
Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase
-
Jamai, A., Puglisi, A. and Strubin, M. (2009) Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase. Mol. Cell, 35, 377-383.
-
(2009)
Mol. Cell
, vol.35
, pp. 377-383
-
-
Jamai, A.1
Puglisi, A.2
Strubin, M.3
-
45
-
-
74949084972
-
A novel strategy of transcription regulation by intragenic nucleosome ordering
-
Vaillant, C., Palmeira, L., Chevereau, G., Audit, B., d'Aubenton-Carafa, Y., Thermes, C. and Arneodo, A. (2010) A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res., 20, 59-67.
-
(2010)
Genome Res
, vol.20
, pp. 59-67
-
-
Vaillant, C.1
Palmeira, L.2
Chevereau, G.3
Audit, B.4
D'Aubenton-Carafa, Y.5
Thermes, C.6
Arneodo, A.7
-
46
-
-
82255173966
-
The unfolded protein response: From stress pathway to homeostatic regulation
-
Walter, P. and Ron, D. (2011) The unfolded protein response: from stress pathway to homeostatic regulation. Science, 334, 1081-1086.
-
(2011)
Science
, vol.334
, pp. 1081-1086
-
-
Walter, P.1
Ron, D.2
-
47
-
-
0034693217
-
Herp, a new ubiquitin-like membrane protein induced by endoplasmic reticulum stress
-
Kokame, K., Agarwala, K.L., Kato, H. and Miyata, T. (2000) Herp, a new ubiquitin-like membrane protein induced by endoplasmic reticulum stress. J. Biol. Chem., 275, 32846-32853.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32846-32853
-
-
Kokame, K.1
Agarwala, K.L.2
Kato, H.3
Miyata, T.4
-
48
-
-
68349131435
-
YFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement
-
Xin, H., Takahata, S., Blanksma, M., McCullough, L., Stillman, D.J. and Formosa, T. (2009) yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement. Mol. Cell, 35, 365-376.
-
(2009)
Mol. Cell
, vol.35
, pp. 365-376
-
-
Xin, H.1
Takahata, S.2
Blanksma, M.3
McCullough, L.4
Stillman, D.J.5
Formosa, T.6
-
49
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi, Y., Takagi, T., Wada, T., Yano, K., Furuya, A., Sugimoto, S., Hasegawa, J. and Handa, H. (1999) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell, 97, 41-51.
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
50
-
-
0032534814
-
Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro
-
Wada, T., Takagi, T., Yamaguchi, Y., Watanabe, D. and Handa, H. (1998) Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J., 17, 7395-7403.
-
(1998)
EMBO J.
, vol.17
, pp. 7395-7403
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Watanabe, D.4
Handa, H.5
-
51
-
-
0041828954
-
FACT facilitates transcription-dependent nucleosome alteration
-
Belotserkovskaya, R., Oh, S., Bondarenko, V.A., Orphanides, G., Studitsky, V.M. and Reinberg, D. (2003) FACT facilitates transcription-dependent nucleosome alteration. Science, 301, 1090-1093.
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
52
-
-
0242579933
-
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
-
Mason, P.B. and Struhl, K. (2003) The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo. Mol. Cell Biol., 23, 8323-8333.
-
(2003)
Mol. Cell Biol.
, vol.23
, pp. 8323-8333
-
-
Mason, P.B.1
Struhl, K.2
-
53
-
-
0042830962
-
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
-
Saunders, A., Werner, J., Andrulis, E.D., Nakayama, T., Hirose, S., Reinberg, D. and Lis, J.T. (2003) Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science, 301, 1094-1096.
-
(2003)
Science
, vol.301
, pp. 1094-1096
-
-
Saunders, A.1
Werner, J.2
Andrulis, E.D.3
Nakayama, T.4
Hirose, S.5
Reinberg, D.6
Lis, J.T.7
-
54
-
-
73349092441
-
Histones: Annotating chromatin
-
Campos, E.I. and Reinberg, D. (2009) Histones: annotating chromatin. Annu. Rev. Genet., 43, 559-599.
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 559-599
-
-
Campos, E.I.1
Reinberg, D.2
-
55
-
-
79951969175
-
Histone chaperones: Modulators of chromatin marks
-
Avvakumov, N., Nourani, A. and Cote, J. (2011) Histone chaperones: modulators of chromatin marks. Mol. Cell, 41, 502-514.
-
(2011)
Mol. Cell
, vol.41
, pp. 502-514
-
-
Avvakumov, N.1
Nourani, A.2
Cote, J.3
-
56
-
-
46149091721
-
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation
-
Fleming, A.B., Kao, C.F., Hillyer, C., Pikaart, M. and Osley, M.A. (2008) H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation. Mol. Cell, 31, 57-66.
-
(2008)
Mol. Cell
, vol.31
, pp. 57-66
-
-
Fleming, A.B.1
Kao, C.F.2
Hillyer, C.3
Pikaart, M.4
Osley, M.A.5
-
57
-
-
84866497062
-
Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes
-
Venkatesh, S., Smolle, M., Li, H., Gogol, M.M., Saint, M., Kumar, S., Natarajan, K. and Workman, J.L. (2012) Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes. Nature, 489, 452-455.
-
(2012)
Nature
, vol.489
, pp. 452-455
-
-
Venkatesh, S.1
Smolle, M.2
Li, H.3
Gogol, M.M.4
Saint, M.5
Kumar, S.6
Natarajan, K.7
Workman, J.L.8
-
58
-
-
84866114872
-
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
-
Smolle, M., Venkatesh, S., Gogol, M.M., Li, H., Zhang, Y., Florens, L., Washburn, M.P. and Workman, J.L. (2012) Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange. Nat. Struct. Mol. Biol., 19, 884-892.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 884-892
-
-
Smolle, M.1
Venkatesh, S.2
Gogol, M.M.3
Li, H.4
Zhang, Y.5
Florens, L.6
Washburn, M.P.7
Workman, J.L.8
-
59
-
-
0037147121
-
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
-
Li, J., Moazed, D. and Gygi, S.P. (2002) Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation. J. Biol. Chem., 277, 49383-49388.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 49383-49388
-
-
Li, J.1
Moazed, D.2
Gygi, S.P.3
-
60
-
-
0037512273
-
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II
-
Li, B., Howe, L., Anderson, S., Yates, J.R. III and Workman, J.L. (2003) The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem., 278, 8897-8903.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 8897-8903
-
-
Li, B.1
Howe, L.2
Anderson, S.3
Yates Iii, J.R.4
Workman, J.L.5
-
61
-
-
0037336041
-
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
-
Xiao, T., Hall, H., Kizer, K.O., Shibata, Y., Hall, M.C., Borchers, C.H. and Strahl, B.D. (2003) Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev., 17, 654-663.
-
(2003)
Genes Dev.
, vol.17
, pp. 654-663
-
-
Xiao, T.1
Hall, H.2
Kizer, K.O.3
Shibata, Y.4
Hall, M.C.5
Borchers, C.H.6
Strahl, B.D.7
-
62
-
-
84862907593
-
The genetic basis of early T-cell precursor acute lymphoblastic leukaemia
-
Zhang, J., Ding, L., Holmfeldt, L., Wu, G., Heatley, S.L., Payne-Turner, D., Easton, J., Chen, X., Wang, J., Rusch, M. et al. (2012) The genetic basis of early T-cell precursor acute lymphoblastic leukaemia. Nature, 481, 157-163.
-
(2012)
Nature
, vol.481
, pp. 157-163
-
-
Zhang, J.1
Ding, L.2
Holmfeldt, L.3
Wu, G.4
Heatley, S.L.5
Payne-Turner, D.6
Easton, J.7
Chen, X.8
Wang, J.9
Rusch, M.10
-
63
-
-
77953170322
-
Histone methyltransferase gene SETD2 is a novel tumor suppressor gene in clear cell renal cell carcinoma
-
Duns, G., van den Berg, E., van Duivenbode, I., Osinga, J., Hollema, H., Hofstra, R.M. and Kok, K. (2010) Histone methyltransferase gene SETD2 is a novel tumor suppressor gene in clear cell renal cell carcinoma. Cancer Res., 70, 4287-4291.
-
(2010)
Cancer Res
, vol.70
, pp. 4287-4291
-
-
Van Den Duns, G.1
Berg, E.2
Van Duivenbode, I.3
Osinga, J.4
Hollema, H.5
Hofstra, R.M.6
Kok, K.7
-
64
-
-
75149188170
-
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
-
Dalgliesh, G.L., Furge, K., Greenman, C., Chen, L., Bignell, G., Butler, A., Davies, H., Edkins, S., Hardy, C., Latimer, C. et al. (2010) Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature, 463, 360-363.
-
(2010)
Nature
, vol.463
, pp. 360-363
-
-
Dalgliesh, G.L.1
Furge, K.2
Greenman, C.3
Chen, L.4
Bignell, G.5
Butler, A.6
Davies, H.7
Edkins, S.8
Hardy, C.9
Latimer, C.10
-
65
-
-
70049111751
-
The mRNA expression of SETD2 in human breast cancer: Correlation with clinico-pathological parameters
-
Al Sarakbi, W., Sasi, W., Jiang, W.G., Roberts, T., Newbold, R.F. and Mokbel, K. (2009) The mRNA expression of SETD2 in human breast cancer: correlation with clinico-pathological parameters. BMC Cancer, 9, 290.
-
(2009)
BMC Cancer
, vol.9
, pp. 290
-
-
Al Sarakbi, W.1
Sasi, W.2
Jiang, W.G.3
Roberts, T.4
Newbold, R.F.5
Mokbel, K.6
|