메뉴 건너뛰기




Volumn , Issue APR 2013, 2013, Pages

Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; BIODIVERSITY; BOOTSTRAPPING; CALIBRATION; CARTILAGINOUS FISH; CODON; EVOLUTION; EVOLUTIONARY HOMOLOGY; FISH; FOSSIL; GAR; GENE LOCUS; GENETIC VARIABILITY; HETEROZYGOSITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; TAXONOMIC IDENTIFICATION;

EID: 84876312266     PISSN: None     EISSN: 21573999     Source Type: Journal    
DOI: 10.1371/currents.tol.2ca8041495ffafd0c92756e75247483e     Document Type: Article
Times cited : (159)

References (111)
  • 1
    • 0032573579 scopus 로고    scopus 로고
    • Zebrafish hox clusters and vertebrate genome evolution
    • Amores A, Force A, Yan YL, Joly L, Amemiya C, et al. (1998) Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.
    • (1998) Science , vol.282 , pp. 1711-1714
    • Amores, A.1    Force, A.2    Yan, Y.L.3    Joly, L.4    Amemiya, C.5    Et al.6
  • 2
    • 4143134848 scopus 로고    scopus 로고
    • Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish
    • Hoegg S, Brinkmann H, Taylor JS, Meyer A (2004) Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish. Journal of Molecular Evolution 59: 190-203.
    • (2004) Journal of Molecular Evolution , vol.59 , pp. 190-203
    • Hoegg, S.1    Brinkmann, H.2    Taylor, J.S.3    Meyer, A.4
  • 3
    • 0030878664 scopus 로고    scopus 로고
    • Fossils, genes and the evolution of animal limbs
    • Shubin N, Tabin C, Carroll S (1997) Fossils, genes and the evolution of animal limbs. Nature 388: 639-648.
    • (1997) Nature , vol.388 , pp. 639-648
    • Shubin, N.1    Tabin, C.2    Carroll, S.3
  • 4
    • 34548349451 scopus 로고    scopus 로고
    • Do Reefs Drive Diversification in Marine Teleosts? Evidence from the Pufferfish and Their Allies (Order Tetraodontiformes)
    • Alfaro ME, Santini F, Brock CD (2007) Do Reefs Drive Diversification in Marine Teleosts? Evidence from the Pufferfish and Their Allies (Order Tetraodontiformes). Evolution 61: 2104-2126.
    • (2007) Evolution , vol.61 , pp. 2104-2126
    • Alfaro, M.E.1    Santini, F.2    Brock, C.D.3
  • 5
    • 84863724890 scopus 로고    scopus 로고
    • Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats
    • Betancur R.R, Ortí G, Stein AM, Marceniuk AP, Pyron RA (2012) Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecol Lett 15: 822-830.
    • (2012) Ecol Lett , vol.15 , pp. 822-830
    • Betancur, R.R.1    Ortí, G.2    Stein, A.M.3    Marceniuk, A.P.4    Pyron, R.A.5
  • 7
    • 33748564638 scopus 로고    scopus 로고
    • Comparative phylogenetic analysis of male alternative reproductive tactics in ray-finned fishes
    • Mank J, Avise J (2006) Comparative phylogenetic analysis of male alternative reproductive tactics in ray-finned fishes. Evolution 60: 1311-1316.
    • (2006) Evolution , vol.60 , pp. 1311-1316
    • Mank, J.1    Avise, J.2
  • 9
    • 9944225115 scopus 로고    scopus 로고
    • Insights into neural mechanisms and evolution of behavior from electric fish
    • Rose GJ (2004) Insights into neural mechanisms and evolution of behavior from electric fish. Nature Reviews Neuroscience 5: 943-951.
    • (2004) Nature Reviews Neuroscience , vol.5 , pp. 943-951
    • Rose, G.J.1
  • 10
    • 0035826690 scopus 로고    scopus 로고
    • Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions
    • Thornton JW (2001) Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions. PNAS 98: 5671-5676.
    • (2001) PNAS , vol.98 , pp. 5671-5676
    • Thornton, J.W.1
  • 12
    • 84866152524 scopus 로고    scopus 로고
    • Adaptive evolution of voltage-gated sodium channels: The first 800 million years
    • Zakon HH (2012) Adaptive evolution of voltage-gated sodium channels: The first 800 million years. Proc Natl Acad Sci USA 109: 10619-10625.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 10619-10625
    • Zakon, H.H.1
  • 13
    • 80051914599 scopus 로고    scopus 로고
    • Three periods of regulatory innovation during vertebrate evolution
    • Lowe CB, Kellis M, Siepel A, Raney BJ, Clamp M, et al. (2011) Three periods of regulatory innovation during vertebrate evolution. Science 333: 1019-1024.
    • (2011) Science , vol.333 , pp. 1019-1024
    • Lowe, C.B.1    Kellis, M.2    Siepel, A.3    Raney, B.J.4    Clamp, M.5    Et al.6
  • 14
    • 33749325080 scopus 로고    scopus 로고
    • Genomic Evolution of Hox Gene Clusters
    • Lemons D, McGinnis W (2006) Genomic Evolution of Hox Gene Clusters. Science 313: 1918-1922.
    • (2006) Science , vol.313 , pp. 1918-1922
    • Lemons, D.1    McGinnis, W.2
  • 17
    • 1842737743 scopus 로고    scopus 로고
    • Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates
    • Brinkmann H, Venkatesh B, Brenner S, Meyer A (2004) Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates. Proc Natl Acad Sci USA 101: 4900-4905.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4900-4905
    • Brinkmann, H.1    Venkatesh, B.2    Brenner, S.3    Meyer, A.4
  • 18
    • 0037814523 scopus 로고    scopus 로고
    • Interrelationships of basal osteichthyans
    • In: P A, editor, London: Taylor & Francis
    • Zhu M, Schultze H-P (2001) Interrelationships of basal osteichthyans. In: P A, editor. Major Events in Early Vertebrate Evolution. London: Taylor & Francis. pp. 289-314.
    • (2001) Major Events In Early Vertebrate Evolution , pp. 289-314
    • Zhu, M.1    Schultze, H.-P.2
  • 19
    • 0000007805 scopus 로고
    • Interrelationships of holosteans
    • In: Greenwood PH, Miles RS, Patterson C, editors, London: Academic Press
    • Patterson C (1973) Interrelationships of holosteans. In: Greenwood PH, Miles RS, Patterson C, editors. Interrelationships of fishes. London: Academic Press. pp. 233-305.
    • (1973) Interrelationships of Fishes , pp. 233-305
    • Patterson, C.1
  • 20
    • 0002994515 scopus 로고
    • Review of ichthyodectiform and other Mesozoic teleost fishes and the theory and practice of classifying fossils
    • Patterson C, Rosen DE (1977) Review of ichthyodectiform and other Mesozoic teleost fishes and the theory and practice of classifying fossils. Bulletin of the American Museum of Natural History 158: 83-172.
    • (1977) Bulletin of the American Museum of Natural History , vol.158 , pp. 83-172
    • Patterson, C.1    Rosen, D.E.2
  • 22
    • 70349201094 scopus 로고    scopus 로고
    • Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes
    • Santini F, Harmon LJ, Carnevale G, Alfaro ME (2009) Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evolutionary Biology 9: 194.
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 194
    • Santini, F.1    Harmon, L.J.2    Carnevale, G.3    Alfaro, M.E.4
  • 25
    • 77957701580 scopus 로고    scopus 로고
    • A teleost classification based on monophyletic groups
    • In: Nelson JS, Schultze H-P, Wilson MVH, editors, München: Verlag Dr. Friedrich Pfeil
    • Wiley EO, Johnson GD (2010) A teleost classification based on monophyletic groups. In: Nelson JS, Schultze H-P, Wilson MVH, editors. Origin and Phylogenetic Interrelationships of Teleosts. München: Verlag Dr. Friedrich Pfeil. pp. 123-182.
    • (2010) Origin and Phylogenetic Interrelationships of Teleosts , pp. 123-182
    • Wiley, E.O.1    Johnson, G.D.2
  • 26
    • 77958119954 scopus 로고    scopus 로고
    • Phylogeny of teleosts based on mitochondrial DNA sequences
    • In: Nelson JS, Schultze H-P, Wilson MVH, editors, München: Verlag Dr. Friedrich Pfeil
    • Broughton RE (2010) Phylogeny of teleosts based on mitochondrial DNA sequences. In: Nelson JS, Schultze H-P, Wilson MVH, editors. Origin and Phylogenetic Interrelationships of Teleosts. München: Verlag Dr. Friedrich Pfeil. pp. 61-76.
    • (2010) Origin and Phylogenetic Interrelationships of Teleosts , pp. 61-76
    • Broughton, R.E.1
  • 29
    • 12244307474 scopus 로고    scopus 로고
    • Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the ancient fish
    • Inoue JG, Miya M, Tsukamoto K, Nishida M (2003) Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the ancient fish. Molecular Phylogenetics and Evolution 26: 110-120.
    • (2003) Molecular Phylogenetics and Evolution , vol.26 , pp. 110-120
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 30
    • 17044393500 scopus 로고    scopus 로고
    • The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths
    • Inoue JG, Miya M, Venkatesh B, Nishida M (2005) The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths. Gene 349: 227-235.
    • (2005) Gene , vol.349 , pp. 227-235
    • Inoue, J.G.1    Miya, M.2    Venkatesh, B.3    Nishida, M.4
  • 32
    • 84867187121 scopus 로고    scopus 로고
    • Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)
    • Zou M, Guo B, Tao W, Arratia G, He S (2012) Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii). Scientific Reports 2.
    • (2012) Scientific Reports , vol.2
    • Zou, M.1    Guo, B.2    Tao, W.3    Arratia, G.4    He, S.5
  • 33
    • 80051924238 scopus 로고    scopus 로고
    • IUCN, version 2010.1 Table 1. International Union for Conservation of Nature
    • IUCN (2010) IUCN Red List version 2010.1 Table 1. International Union for Conservation of Nature.
    • (2010) IUCN Red List
  • 34
    • 12044251396 scopus 로고
    • Comparison of hypotheses on the relationships of sarcopterygians
    • Schultze H-P (1994) Comparison of hypotheses on the relationships of sarcopterygians. Systematic Biology 43: 155-173.
    • (1994) Systematic Biology , vol.43 , pp. 155-173
    • Schultze, H.-P.1
  • 35
    • 33751039720 scopus 로고    scopus 로고
    • Bushes in the tree of life
    • Rokas A, Carroll SB (2006) Bushes in the tree of life. PLoS Biology 4: 1899-1904.
    • (2006) PLoS Biology , vol.4 , pp. 1899-1904
    • Rokas, A.1    Carroll, S.B.2
  • 36
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J (1978) Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
    • (1978) Systematic Zoology , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 37
    • 33947659375 scopus 로고    scopus 로고
    • A practical approach to phylogenomics: The phylogeny of ray-finned fish (Actinopterygii) as a case study
    • Li C, Ortí G, Zhang G, Lu G (2007) A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC Evolutionary Biology 7: 44.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 44
    • Li, C.1    Ortí, G.2    Zhang, G.3    Lu, G.4
  • 38
    • 3242720295 scopus 로고    scopus 로고
    • Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
    • Kikugawa K, Katoh K, Kuraku S, Sakurai H, Ishida O, et al. (2004) Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes. BMC Biology 2: 1-11.
    • (2004) BMC Biology , vol.2 , pp. 1-11
    • Kikugawa, K.1    Katoh, K.2    Kuraku, S.3    Sakurai, H.4    Ishida, O.5    Et al.6
  • 39
    • 0035949652 scopus 로고    scopus 로고
    • Molecular synapomorphies resolve evolutionary relationships of extatn jawed vertebrates
    • Venkatesh B, Erdmann MV, Brenner SE (2001) Molecular synapomorphies resolve evolutionary relationships of extatn jawed vertebrates. Proc Natl Acad Sci U S A 98: 11382-11387.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 11382-11387
    • Venkatesh, B.1    Erdmann, M.V.2    Brenner, S.E.3
  • 43
    • 0000924060 scopus 로고
    • The skull and pectoral girdle of the parasemionotid fish Watsonulus eugnathoides from the early Triassic Sakamena Group of Madagascar, with comments on the relationships of the holostean fishes
    • Olsen PE (1984) The skull and pectoral girdle of the parasemionotid fish Watsonulus eugnathoides from the early Triassic Sakamena Group of Madagascar, with comments on the relationships of the holostean fishes. Journal Vertebrate Paleontology 4: 481-499.
    • (1984) Journal Vertebrate Paleontology , vol.4 , pp. 481-499
    • Olsen, P.E.1
  • 44
    • 0035542539 scopus 로고    scopus 로고
    • The sister-group of Teleostei: Consensus and disagreements
    • Arratia G (2001) The sister-group of Teleostei: consensus and disagreements. Journal of Vertebrate Paleontology 21: 767-773.
    • (2001) Journal of Vertebrate Paleontology , vol.21 , pp. 767-773
    • Arratia, G.1
  • 45
    • 47249090871 scopus 로고    scopus 로고
    • Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci
    • Li C, Lu G, Orti G (2008) Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci. SystBiol 57: 519-539.
    • (2008) SystBiol , vol.57 , pp. 519-539
    • Li, C.1    Lu, G.2    Orti, G.3
  • 47
    • 0002285816 scopus 로고    scopus 로고
    • Teleostean monophyly
    • In: Stiassny MLJ, Parenti LR, Johnson.G.D., editors, New York: Academic
    • de Pinna MCC (1996) Teleostean monophyly. In: Stiassny MLJ, Parenti LR, Johnson.G.D., editors. Interrelationships of fishes. New York: Academic. pp. 147-162.
    • (1996) Interrelationships of Fishes , pp. 147-162
    • de Pinna, M.C.C.1
  • 48
    • 0000960535 scopus 로고    scopus 로고
    • The monophyly of telostei and stem-group teleosts
    • In: Arratia G, Schultze H-P, editors, Munchen: Pfeil
    • Arratia G (1999) The monophyly of telostei and stem-group teleosts. In: Arratia G, Schultze H-P, editors. Mesozoic Fishes 2: Systematics and Fossil Record. Munchen: Pfeil. pp. 265-334.
    • (1999) Mesozoic Fishes 2: Systematics and Fossil Record , pp. 265-334
    • Arratia, G.1
  • 49
    • 0007344437 scopus 로고    scopus 로고
    • New teleostean fishes from southern Germany and the systematic problems concerning the pholidophoriforms
    • Arratia G (2000) New teleostean fishes from southern Germany and the systematic problems concerning the pholidophoriforms. Paläontol Z 74: 113-143.
    • (2000) Paläontol Z , vol.74 , pp. 113-143
    • Arratia, G.1
  • 50
    • 0344795369 scopus 로고    scopus 로고
    • Phylogenetic relationships of Teleostei. Past and present
    • Arratia G (2000) Phylogenetic relationships of Teleostei. Past and present. Estudios Oceanologicos 19: 19-51.
    • (2000) Estudios Oceanologicos , vol.19 , pp. 19-51
    • Arratia, G.1
  • 51
    • 84871006014 scopus 로고    scopus 로고
    • Critical analysis of the impact of fossils on teleostean phylogenies, especially that of basal teleosts
    • In: Elliott D, Maisey J, Yu Y, Miao D, editors, München: Verlag Dr. F. Pfeil
    • Arratia G (2010) Critical analysis of the impact of fossils on teleostean phylogenies, especially that of basal teleosts. In: Elliott D, Maisey J, Yu Y, Miao D, editors. Morphology, Phylogeny and Paleobiogeography of Fossil Fishes. München: Verlag Dr. F. Pfeil. pp. 247-274.
    • (2010) Morphology, Phylogeny and Paleobiogeography of Fossil Fishes , pp. 247-274
    • Arratia, G.1
  • 52
    • 0034904214 scopus 로고    scopus 로고
    • A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences
    • Inoue J, Miya M, Tsukamoto K, Nishida M (2001) A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences. Molecular Phylogenetics and Evolution 20: 275-285.
    • (2001) Molecular Phylogenetics and Evolution , vol.20 , pp. 275-285
    • Inoue, J.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 53
    • 0027564167 scopus 로고
    • A 28S rRNA-based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms
    • Le HLV, Lecointre G, Perasso R (1993) A 28S rRNA-based phylogeny of the gnathostomes: first steps in the analysis of conflict and congruence with morphologically based cladograms. Molecular Phylogenetics and Evolution 2: 31-51.
    • (1993) Molecular Phylogenetics and Evolution , vol.2 , pp. 31-51
    • Le, H.L.V.1    Lecointre, G.2    Perasso, R.3
  • 57
    • 0003285088 scopus 로고
    • The caudal skeleton of Jurassic teleosts; a phylogenetic analysis
    • In: Chang M-m, Liu Y-h, G.-r. Z, editors, Beijing: Science Press
    • Arratia G (1991) The caudal skeleton of Jurassic teleosts; a phylogenetic analysis. In: Chang M-m, Liu Y-h, G.-r. Z, editors. Early Vertebrates and Related Problems of Evolutionary Biology. Beijing: Science Press. pp. 249-340.
    • (1991) Early Vertebrates and Related Problems of Evolutionary Biology , pp. 249-340
    • Arratia, G.1
  • 58
    • 64949146217 scopus 로고    scopus 로고
    • Actinopterygian postcranial skeleton with special reference to the diversity of fin ray elements, and the prolem of identifying homologies
    • In: Arratia G, Schultze H-P, Wilson MVH, editors, München: Verlag Dr. F. Pfeil
    • Arratia G (2008) Actinopterygian postcranial skeleton with special reference to the diversity of fin ray elements, and the prolem of identifying homologies. In: Arratia G, Schultze H-P, Wilson MVH, editors. Mesozoic Fishes 4 - Homology and Phylogeny. München: Verlag Dr. F. Pfeil. pp. 49-101.
    • (2008) Mesozoic Fishes 4 - Homology and Phylogeny , pp. 49-101
    • Arratia, G.1
  • 60
    • 26444482460 scopus 로고    scopus 로고
    • Molecular Phylogeny and Divergence Times of Deuterostome Animals
    • Blair JE, Hedges SB (2005) Molecular Phylogeny and Divergence Times of Deuterostome Animals. Molecular Biology and Evolution 22: 2275-2284.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 2275-2284
    • Blair, J.E.1    Hedges, S.B.2
  • 61
    • 49249122999 scopus 로고    scopus 로고
    • Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences
    • Azuma Y, Kumazawa Y, Miya M, Mabuchi K, Nishida M (2008) Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evolutionary Biology: 215-228.
    • (2008) BMC Evolutionary Biology , pp. 215-228
    • Azuma, Y.1    Kumazawa, Y.2    Miya, M.3    Mabuchi, K.4    Nishida, M.5
  • 62
    • 84861007194 scopus 로고    scopus 로고
    • Comparable ages for the independent origins of electrogenesis in African and South American weakly electric fishes
    • Lavoue S, Miya M, Arnegard ME, Sullivan JP, Hopkins CD, et al. (2012) Comparable ages for the independent origins of electrogenesis in African and South American weakly electric fishes. PLOS One 7.
    • (2012) PLOS One , vol.7
    • Lavoue, S.1    Miya, M.2    Arnegard, M.E.3    Sullivan, J.P.4    Hopkins, C.D.5    Et al.6
  • 64
    • 34249731438 scopus 로고    scopus 로고
    • Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences
    • Li C, Ortí G (2007) Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 44: 386-398.
    • (2007) Molecular Phylogenetics and Evolution , vol.44 , pp. 386-398
    • Li, C.1    Ortí, G.2
  • 67
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 68
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, et al. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
    • (2012) Systematic Biology , vol.61 , pp. 539-542
    • Ronquist, F.1    Teslenko, M.2    van der Mark, P.3    Ayres, D.L.4    Darling, A.5    Et al.6
  • 69
    • 84861380450 scopus 로고    scopus 로고
    • PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R, Calcott B, Ho SYW, Guindon S PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol 29: 1695-1701.
    • Mol Biol Evol , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.W.3    Guindon, S.4
  • 70
    • 63549118031 scopus 로고    scopus 로고
    • STEM: Species tree estimation using maximum likelihood for gene trees under coalescence
    • Kubatko LS, Carstens BC, Knowles LL (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25: 971-973.
    • (2009) Bioinformatics , vol.25 , pp. 971-973
    • Kubatko, L.S.1    Carstens, B.C.2    Knowles, L.L.3
  • 71
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison WP (1997) Gene trees in species trees. Systematic Biology 46: 523-536.
    • (1997) Systematic Biology , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 73
    • 70349425459 scopus 로고    scopus 로고
    • Estimating species phylogenies using coalescence times among sequences
    • Liu L, Yu L, Pearl DK, Edwards SV (2009) Estimating species phylogenies using coalescence times among sequences. Systematic Biology 58: 468-477.
    • (2009) Systematic Biology , vol.58 , pp. 468-477
    • Liu, L.1    Yu, L.2    Pearl, D.K.3    Edwards, S.V.4
  • 74
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 75
    • 70350103638 scopus 로고    scopus 로고
    • Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
    • Ho SYW, Phillips MJ (2009) Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology 58: 367-380.
    • (2009) Systematic Biology , vol.58 , pp. 367-380
    • Ho, S.Y.W.1    Phillips, M.J.2
  • 76
    • 84555194967 scopus 로고    scopus 로고
    • Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: A comparison of three approaches
    • Lukoscheck V, Keogh JS, Avise JC (2012) Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. SystBiol 61: 22-43.
    • (2012) SystBiol , vol.61 , pp. 22-43
    • Lukoscheck, V.1    Keogh, J.S.2    Avise, J.C.3
  • 77
    • 0001067192 scopus 로고
    • Morphology and interrelationships of primitive actinopterygian fishes
    • Patterson C (1982) Morphology and interrelationships of primitive actinopterygian fishes. American Zoologist 22: 241-259.
    • (1982) American Zoologist , vol.22 , pp. 241-259
    • Patterson, C.1
  • 78
    • 13644273302 scopus 로고    scopus 로고
    • Peixes do Albiano-Cenomaniano do Grupo Itapecuru no estado do Maranhão, Brasil
    • In: Rossett DF, Góes AM, Truckenbrodt T, editors, MPEQ
    • Dutra MFA, Malabarba CSL (2001) Peixes do Albiano-Cenomaniano do Grupo Itapecuru no estado do Maranhão, Brasil. In: Rossett DF, Góes AM, Truckenbrodt T, editors. O Cretáceo da Bacia de São Luis-Grajaú, MPEQ. pp. 191-208.
    • (2001) O Cretáceo Da Bacia De São Luis-Grajaú , pp. 191-208
    • Dutra, M.F.A.1    Malabarba, C.S.L.2
  • 79
    • 0002309612 scopus 로고    scopus 로고
    • An overview of the freshwater fish fauna from the Kem Kem beds (Late Cretaceous: Cenomanian) of southeast Morocco
    • In: Arratia G, Schultze H-P, editors, München: Verlag Dr. F. Pfeil
    • Dutheil DB (1999) An overview of the freshwater fish fauna from the Kem Kem beds (Late Cretaceous: Cenomanian) of southeast Morocco. In: Arratia G, Schultze H-P, editors. Mesozoic Fishes 2- Systematics and Fossil Record. München: Verlag Dr. F. Pfeil. pp. 553-563.
    • (1999) Mesozoic Fishes 2- Systematics and Fossil Record , pp. 553-563
    • Dutheil, D.B.1
  • 80
    • 0036211485 scopus 로고    scopus 로고
    • Diversification of Polypteriformes and special comparisosn with Lepisosteiformes
    • Gayet M, Meunier FJ (2002) Diversification of Polypteriformes and special comparisosn with Lepisosteiformes. Paleontology 45: 361-376.
    • (2002) Paleontology , vol.45 , pp. 361-376
    • Gayet, M.1    Meunier, F.J.2
  • 81
    • 70350116756 scopus 로고    scopus 로고
    • Calibrating and constraining molecular clocks
    • In: Hedges SB, Kumar S, editors, Oxford: Oxford University Press
    • Benton MJ, Donoghue PCJ, Asher RJ (2009) Calibrating and constraining molecular clocks. In: Hedges SB, Kumar S, editors. The Timetree of Life. Oxford: Oxford University Press. pp. 35-86.
    • (2009) The Timetree of Life , pp. 35-86
    • Benton, M.J.1    Donoghue, P.C.J.2    Asher, R.J.3
  • 83
    • 0000174274 scopus 로고    scopus 로고
    • Morphology, characters, and the interrelationships of basal sarcopterygians
    • In: Stiassny MLJ, Parenti LR, Johnson GD, editors, San Diego: Academic Press
    • Cloutier R, Ahlberg PE (1996) Morphology, characters, and the interrelationships of basal sarcopterygians. In: Stiassny MLJ, Parenti LR, Johnson GD, editors. Interrelationships of fishes. San Diego: Academic Press. pp. 445-479.
    • (1996) Interrelationships of Fishes , pp. 445-479
    • Cloutier, R.1    Ahlberg, P.E.2
  • 84
    • 84978866020 scopus 로고
    • Lungfish neural characters and their bearing on sarcoptergian phylogeny
    • In: Bemis WE, Burggren WW, Kemp NE, editors, New York: Alan R Liss
    • Northcutt RG (1986) Lungfish neural characters and their bearing on sarcoptergian phylogeny. In: Bemis WE, Burggren WW, Kemp NE, editors. The biology and evolution of lungfishes. New York: Alan R Liss. pp. 277-297.
    • (1986) The Biology and Evolution of Lungfishes , pp. 277-297
    • Northcutt, R.G.1
  • 86
    • 3242743113 scopus 로고    scopus 로고
    • the phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes
    • Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N, Klein J (2004) the phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Molecular Biology and Evolution 21: 1512-1524.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 1512-1524
    • Takezaki, N.1    Figueroa, F.2    Zaleska-Rutczynska, Z.3    Takahata, N.4    Klein, J.5
  • 87
    • 79952345833 scopus 로고    scopus 로고
    • 43 genes support the lungfish-coelacanth grouping related to the closest living relative of tetrapods with the Bayesian method under the coalescence model
    • Shan Y, Gras R (2011) 43 genes support the lungfish-coelacanth grouping related to the closest living relative of tetrapods with the Bayesian method under the coalescence model. BMC Research Notes 4: 49.
    • (2011) BMC Research Notes , vol.4 , pp. 49
    • Shan, Y.1    Gras, R.2
  • 88
    • 0001932614 scopus 로고
    • A new rhizodontiform fish from the Early Carboniferous of Victoria, Australia, with remarks on the phylogenetic position of the group
    • Long JA (1989) A new rhizodontiform fish from the Early Carboniferous of Victoria, Australia, with remarks on the phylogenetic position of the group. Journal of Vertebrate Paleontology 9: 1-17.
    • (1989) Journal of Vertebrate Paleontology , vol.9 , pp. 1-17
    • Long, J.A.1
  • 89
    • 0031284411 scopus 로고    scopus 로고
    • The oldest actinopterygian fish
    • M, Schultze H-P (1997) The oldest actinopterygian fish. Lethaia 30: 293-304.
    • (1997) Lethaia , vol.30 , pp. 293-304
    • Schultze, H.-P.M.1
  • 91
    • 0003182066 scopus 로고
    • A re-examination of sarcopterygian interrelationships, with special reference to the Porolepiformes
    • Ahlberg P (1991) A re-examination of sarcopterygian interrelationships, with special reference to the Porolepiformes. Zoological Journal Linnean Society 103: 241-287.
    • (1991) Zoological Journal Linnean Society , vol.103 , pp. 241-287
    • Ahlberg, P.1
  • 92
    • 84860299854 scopus 로고    scopus 로고
    • Earliest known coelacanth skull extends the range of anatomically modern coelacanths to the Early Devonian
    • Zhu M, Yu X, Lu J, Qiao T, Zhao W, et al. (2012) Earliest known coelacanth skull extends the range of anatomically modern coelacanths to the Early Devonian. Nature Communications 3: 772.
    • (2012) Nature Communications , vol.3 , pp. 772
    • Zhu, M.1    Yu, X.2    Lu, J.3    Qiao, T.4    Zhao, W.5    Et al.6
  • 93
    • 0032330518 scopus 로고    scopus 로고
    • A new porolepiform-like fish, Psarolepis romeri, gen. et ap. nov. (Sarcopterygiii, Osteichthyes) from the Lower Devonian of Yunnan, China
    • Yu X (1998) A new porolepiform-like fish, Psarolepis romeri, gen. et ap. nov. (Sarcopterygiii, Osteichthyes) from the Lower Devonian of Yunnan, China. Journal Vertebrate Paleontology 18: 261-274.
    • (1998) Journal Vertebrate Paleontology , vol.18 , pp. 261-274
    • Yu, X.1
  • 95
    • 0000059927 scopus 로고
    • Gill arches and the phylogeny of fishes, with notes on the classification of vertebrates
    • Nelson G (1969) Gill arches and the phylogeny of fishes, with notes on the classification of vertebrates. Bulletin of the American Museum of Natural History 141: 475-552.
    • (1969) Bulletin of the American Museum of Natural History , vol.141 , pp. 475-552
    • Nelson, G.1
  • 96
    • 0001807749 scopus 로고
    • Interrelationships of actinopterygians and brachiopterygians: Evidence from pectoral anatomy
    • In: Greenwood PH, Miles RS, Patterson C, editors, London: Academic Press
    • Jessen HL (1973) Interrelationships of actinopterygians and brachiopterygians: Evidence from pectoral anatomy. In: Greenwood PH, Miles RS, Patterson C, editors. Interrelationships of Fishes. London: Academic Press. pp. 227-232.
    • (1973) Interrelationships of Fishes , pp. 227-232
    • Jessen, H.L.1
  • 98
    • 85010583662 scopus 로고    scopus 로고
    • A comprehensive phylogenetic study of amiid fishes (Amiidae) based on comparative skeletal anatomy. An empirical search for interconnected patterns of natural history
    • Grande L, Bemis W (1998) A comprehensive phylogenetic study of amiid fishes (Amiidae) based on comparative skeletal anatomy. An empirical search for interconnected patterns of natural history. Journal of Vertebrate Paleontology 18: 1-690.
    • (1998) Journal of Vertebrate Paleontology , vol.18 , pp. 1-690
    • Grande, L.1    Bemis, W.2
  • 99
    • 34447333562 scopus 로고
    • A new palaeoniscid fish from the Texas Permian
    • Dunkle DH (1939) A new palaeoniscid fish from the Texas Permian. American Journal of Sciences 237: 262-274.
    • (1939) American Journal of Sciences , vol.237 , pp. 262-274
    • Dunkle, D.H.1
  • 100
  • 101
    • 2442707716 scopus 로고    scopus 로고
    • Fugu genome analysis provides evidence for a shole-genome duplication early during the evolution of ray-finned fishes
    • Christoffels A, Koh EGL, Chia J, Brenner SE, Aparicio S, et al. (2004) Fugu genome analysis provides evidence for a shole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol 21: 1146-1151.
    • (2004) Mol Biol Evol , vol.21 , pp. 1146-1151
    • Christoffels, A.1    Koh, E.G.L.2    Chia, J.3    Brenner, S.E.4    Aparicio, S.5    Et al.6
  • 102
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer Y (2004) Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci U S A 101: 1638-1643.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    de Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van de Peer, Y.5
  • 103
    • 0012707351 scopus 로고    scopus 로고
    • Fossil osteoglossomorphs in East Asia and their implications in teleostean phylogeny
    • In: Arratia G, Viohl G, editors, München: Verlag Dr. F. Pfeil
    • Shen M (1996) Fossil osteoglossomorphs in East Asia and their implications in teleostean phylogeny. In: Arratia G, Viohl G, editors. Mesozoic fishes: systematics and plaleoecology. München: Verlag Dr. F. Pfeil. pp. 261-272.
    • (1996) Mesozoic Fishes: Systematics and Plaleoecology , pp. 261-272
    • Shen, M.1
  • 104
    • 0032329524 scopus 로고    scopus 로고
    • Morphology and phylogenetic relationships of Kuntulunia (Teleostei: Osteoglossomorpha)
    • Zhang J-G (1998) Morphology and phylogenetic relationships of Kuntulunia (Teleostei: Osteoglossomorpha). Journal Vertebrate Paleontology 18: 280-300.
    • (1998) Journal Vertebrate Paleontology , vol.18 , pp. 280-300
    • Zhang, J.-G.1
  • 105
    • 0001259221 scopus 로고    scopus 로고
    • Early divergence of Hiodontiformes sensu stricto in East Asia and phylogeny of some Late Mesozoic teleosts from China
    • In: Arratia G, Schultze H-P, editors, München: Verlag Dr. F. Pfeil
    • Li G-Q, Wilson MVH (1999) Early divergence of Hiodontiformes sensu stricto in East Asia and phylogeny of some Late Mesozoic teleosts from China. In: Arratia G, Schultze H-P, editors. Mesozoic Fishes 2 - Systematics and Fossil Record. München: Verlag Dr. F. Pfeil. pp. 369-384.
    • (1999) Mesozoic Fishes 2 - Systematics and Fossil Record , pp. 369-384
    • Li, G.-Q.1    Wilson, M.V.H.2
  • 106
    • 0032583425 scopus 로고    scopus 로고
    • Comments on basal teleosts and teleostean phylogeny, by Gloria Arratia
    • Patterson C (1998) Comments on basal teleosts and teleostean phylogeny, by Gloria Arratia. Copeia 1998: 1107-1113.
    • (1998) Copeia 1998 , pp. 1107-1113
    • Patterson, C.1
  • 107
    • 0002174047 scopus 로고
    • Über den Bau and die Grenzer der Ganoiden and über das natürliche System dei Fische
    • Müller J (1845) Über den Bau and die Grenzer der Ganoiden and über das natürliche System dei Fische. Archiv für Naturgeschichte 11 (1844): 91-141.
    • (1845) Archiv Für Naturgeschichte , vol.11 , Issue.1844 , pp. 91-141
    • Müller, J.1
  • 108
    • 84876330382 scopus 로고    scopus 로고
    • Diversity of Mesozoic semionotiform fishes and the origin of gars (Lepisosteidae)
    • Cavin L (2010) Diversity of Mesozoic semionotiform fishes and the origin of gars (Lepisosteidae). Naturwissenschaften 57: 1017-1022.
    • (2010) Naturwissenschaften , vol.57 , pp. 1017-1022
    • Cavin, L.1
  • 110
    • 33845596459 scopus 로고    scopus 로고
    • Timing of recovery from the end-Permian extinction: Geochronologic and biostratigraphic constraints from south China
    • Lehrmann DJ, Ramezani J, Bowring SA, Martin MW, Montgomery P, et al. (2006) Timing of recovery from the end-Permian extinction: Geochronologic and biostratigraphic constraints from south China. Geology 34: 1053-1056.
    • (2006) Geology , vol.34 , pp. 1053-1056
    • Lehrmann, D.J.1    Ramezani, J.2    Bowring, S.A.3    Martin, M.W.4    Montgomery, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.