-
1
-
-
0036804729
-
Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18S ribosomal RNA phylogeny
-
Aris-Brosou S., Yang Z. 2002. Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18S ribosomal RNA phylogeny. Syst. Biol. 51:703-714.
-
(2002)
Syst. Biol
, vol.51
, pp. 703-714
-
-
Aris-Brosou, S.1
Yang, Z.2
-
2
-
-
0347356457
-
Bayesian models of episodic evolution support a Precambrian explosive diversification of the Metazoa
-
Aris-Brosou S., Yang Z. 2003. Bayesian models of episodic evolution support a Precambrian explosive diversification of the Metazoa. Mol. Biol. Evol. 20:1947-1954.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 1947-1954
-
-
Aris-Brosou, S.1
Yang, Z.2
-
3
-
-
0037155601
-
Dynamics of Pleistocene population extinctions in Beringian brown bears
-
Barnes I., Matheus P., Shapiro B., Jensen D., Cooper A. 2002. Dynamics of Pleistocene population extinctions in Beringian brown bears. Science. 295:2267-2270.
-
(2002)
Science
, vol.295
, pp. 2267-2270
-
-
Barnes, I.1
Matheus, P.2
Shapiro, B.3
Jensen, D.4
Cooper, A.5
-
4
-
-
23244458250
-
Evolution of the extinct Sabretooths and the American cheetah-like cat
-
Barnett R., Barnes I., Phillips M.J., Martin L.D., Harington C.R., Leonard J.A., Cooper A. 2005. Evolution of the extinct Sabretooths and the American cheetah-like cat. Curr. Biol. 15:R589-R590.
-
(2005)
Curr. Biol
, vol.15
-
-
Barnett, R.1
Barnes, I.2
Phillips, M.J.3
Martin, L.D.4
Harington, C.R.5
Leonard, J.A.6
Cooper, A.7
-
5
-
-
46649116745
-
Australia's oldest marsupial fossils and their biogeographical implications
-
Beck R.D.M., Godthelp H., Weisbecker V., Archer M., Hand S.J. 2008. Australia's oldest marsupial fossils and their biogeographical implications. PLoS One. 3:e1858.
-
(2008)
PLoS One
, vol.3
-
-
Beck, R.D.M.1
Godthelp, H.2
Weisbecker, V.3
Archer, M.4
Hand, S.J.5
-
6
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
Benton M.J., Donoghue P.C. 2007. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24:26-53.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.2
-
7
-
-
36849143183
-
The world's oldest songbird
-
Boles W.E. 1995. The world's oldest songbird. Nature 374:21-22.
-
(1995)
Nature
, vol.374
, pp. 21-22
-
-
Boles, W.E.1
-
8
-
-
37849053471
-
Estimating divergence times in large phylogenetic trees
-
Britton T., Anderson C.L., Jacquet D., Lundqvist S., Bremer K. 2007. Estimating divergence times in large phylogenetic trees. Syst. Biol. 56:741-752.
-
(2007)
Syst. Biol.
, vol.56
, pp. 741-752
-
-
Britton, T.1
Anderson, C.L.2
Jacquet, D.3
Lundqvist, S.4
Bremer, K.5
-
9
-
-
41049092682
-
Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
-
Brown J.W., Rest J.S., Garcia-Moreno J., Sorenson M.D., Mindell D.P. 2008. Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Biol. 6:6.
-
(2008)
BMC Biol
, vol.6
, pp. 6
-
-
Brown, J.W.1
Rest, J.S.2
Garcia-Moreno, J.3
Sorenson, M.D.4
Mindell, D.P.5
-
10
-
-
12744280741
-
Definitive fossil evidence for the extant avian radiation in the Cretaceous
-
Clarke J.A., Tambussi C.P., Noriega J.I., Erickson G.M., Ketcham R.A. 2005. Definitive fossil evidence for the extant avian radiation in the Cretaceous. Nature. 433:305-308.
-
(2005)
Nature
, vol.433
, pp. 305-308
-
-
Clarke, J.A.1
Tambussi, C.P.2
Noriega, J.I.3
Erickson, G.M.4
Ketcham, R.A.5
-
11
-
-
33846046530
-
217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment
-
Coolen M.J., Overmann J. 2007. 217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment. Environ. Microbiol. 9:238-249.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 238-249
-
-
Coolen, M.J.1
Overmann, J.2
-
12
-
-
0030621127
-
Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
-
Cooper A., Penny D. 1997. Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence. Science. 275: 1109-1113.
-
(1997)
Science
, vol.275
, pp. 1109-1113
-
-
Cooper, A.1
Penny, D.2
-
13
-
-
0034100202
-
Understanding the overdispersed molecular clock
-
Cutler D.J. 2000. Understanding the overdispersed molecular clock. Genetics. 154:1403-1417.
-
(2000)
Genetics
, vol.154
, pp. 1403-1417
-
-
Cutler, D.J.1
-
14
-
-
34447333669
-
Rocks and clocks: Calibrating the Tree of Life using fossils and molecules
-
Donoghue P.C., Benton M.J. 2007. Rocks and clocks: calibrating the Tree of Life using fossils and molecules. Trends Ecol. Evol. 22: 424-431.
-
(2007)
Trends Ecol. Evol
, vol.22
, pp. 424-431
-
-
Donoghue, P.C.1
Benton, M.J.2
-
15
-
-
0030023247
-
Determining divergence times of the major kingdoms of living organisms with a protein clock
-
Doolittle R.F., Feng D.-F., Tsang S., Cho G., Little E. 1996. Determining divergence times of the major kingdoms of living organisms with a protein clock. Science. 271:470-477.
-
(1996)
Science
, vol.271
, pp. 470-477
-
-
Doolittle, R.F.1
Feng, D.-F.2
Tsang, S.3
Cho, G.4
Little, E.5
-
17
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
-
(2007)
BMC Evol. Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
18
-
-
34447300408
-
Mitochondrial analysis shows a Neolithic Near Eastern origin for domestic cattle and no evidence of domestication of European aurochs
-
Edwards C.J., Bollongino R., Scheu A., Chamberlain A., Tresset A., Vigne J.-D., Baird J.F., Larson G. Ho S.Y.W., Heupink T.H., Shapiro B., Czerwinski P., Arbogast R.-M., Arndt B., Bartosiewicz L., Benecke N., Budja N., Chaix L., Choyke A.M., Coqueugniot E., Döhle H.-J., Göldner H., Hartz S., Helmer D., Herzig B., Hongo H., Mashkou M. Ö zdogan M., Pucher E., Roth G., Schade-Lindig S., Schmölcke U., Schulting R., Stephan E., Uerpmann H.-P., Vörös I., Bradley D.G., Burger J. 2007. Mitochondrial analysis shows a Neolithic Near Eastern origin for domestic cattle and no evidence of domestication of European aurochs. Proc. R. Soc. Lond. B. 274: 1377-1385.
-
(2007)
Proc. R. Soc. Lond. B
, vol.274
, pp. 1377-1385
-
-
Edwards, C.J.1
Bollongino, R.2
Scheu, A.3
Chamberlain, A.4
Tresset, A.5
Vigne, J.-D.6
Baird, J.F.7
Larson, G.8
Ho, S.Y.W.9
Heupink, T.H.10
Shapiro, B.11
Czerwinski, P.12
Arbogast, R.-M.13
Arndt, B.14
Bartosiewicz, L.15
Benecke, N.16
Budja, N.17
Chaix, L.18
Choyke, A.M.19
Coqueugniot, E.20
Döhle, H.-J.21
Göldner, H.22
Hartz, S.23
Helmer, D.24
Herzig, B.25
Hongo, H.26
Mashkou, M.27
Zdogan, M.Ö.28
Pucher, E.29
Roth, G.30
Schade-Lindig, S.31
Schmölcke, U.32
Schulting, R.33
Stephan, E.34
Uerpmann, H.-P.35
Vörös, I.36
Bradley, D.G.37
Burger, J.38
more..
-
19
-
-
34447249787
-
Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates
-
Emerson B.C. 2007. Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates. Syst. Biol. 56:337-345.
-
(2007)
Syst. Biol
, vol.56
, pp. 337-345
-
-
Emerson, B.C.1
-
20
-
-
41549084082
-
A Bayesian evaluation of human mito-chondrial substitution rates
-
Endicott P., Ho S.Y.W. 2008. A Bayesian evaluation of human mito-chondrial substitution rates. Am. J. Hum. Genet. 82:895-902.
-
(2008)
Am. J. Hum. Genet
, vol.82
, pp. 895-902
-
-
Endicott, P.1
Ho, S.Y.W.2
-
21
-
-
0028956985
-
Explosive evolution in tertiary birds and mammals
-
Feduccia A. 1995. Explosive evolution in tertiary birds and mammals. Science. 267:637-638.
-
(1995)
Science
, vol.267
, pp. 637-638
-
-
Feduccia, A.1
-
22
-
-
0031403313
-
Estimating taxonomic durations and preservation probability
-
Foote M. 1997. Estimating taxonomic durations and preservation probability. Paleobiology. 23:278-300.
-
(1997)
Paleobiology
, vol.23
, pp. 278-300
-
-
Foote, M.1
-
23
-
-
0033605215
-
Evolutionary and preservational constraints on origins of biologic groups: Divergence times of eutherian mammals
-
Foote M., Hunter J.P., Janis C.M., Sepkoski J.J. Jr. 1999. Evolutionary and preservational constraints on origins of biologic groups: divergence times of eutherian mammals. Science. 283:1310-1314.
-
(1999)
Science
, vol.283
, pp. 1310-1314
-
-
Foote, M.1
Hunter, J.P.2
Janis, C.M.3
Sepkoski Jr., J.J.4
-
25
-
-
46149124355
-
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
-
Gilbert M.T.P., Drautz D.I., Lesk A.M., Ho S.Y.W., Qi J., Ratan A., Hsu C.-H., Sher A., Dalén L., Götherström A., Tomsho L.P., Rendulic S., Packard M., Campos P.F., Kuznetsova T., Shidlovskiy F., Tikhonov A., Willerslev E., Iacumin P., Buigues B., Ericson P.G.P., Germonpré M., Kosintsev P., NikolaevV., Nowak-Kemp M., Knight J.R., Irzyk G.P., Perbost C.S., Fredrikson K.M., Harkins T.T., Sheridan S., Miller W., Schuster S.C. 2008. Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proc. Natl Acad. Sci. USA. 105: 8327-8332.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 8327-8332
-
-
Gilbert, M.T.P.1
Drautz, D.I.2
Lesk, A.M.3
Ho, S.Y.W.4
Qi, J.5
Ratan, A.6
Hsu, C.-H.7
Sher, A.8
Dalén, L.9
Götherström, A.10
Tomsho, L.P.11
Rendulic, S.12
Packard, M.13
Campos, P.F.14
Kuznetsova, T.15
Shidlovskiy, F.16
Tikhonov, A.17
Willerslev, E.18
Iacumin, P.19
Buigues, B.20
Ericson, P.G.P.21
Germonpré, M.22
Kosintsev, P.23
Nikolaevv24
Nowak-Kemp, M.25
Knight, J.R.26
Irzyk, G.P.27
Perbost, C.S.28
Fredrikson, K.M.29
Harkins, T.T.30
Sheridan, S.31
Miller, W.32
Schuster, S.C.33
more..
-
26
-
-
0026614635
-
Earliest known Australian Tertiary mammal fauna
-
Godthelp H., Archer M., Cifelli R.L., Hand S.J., Gilkeson C.F. 1992. Earliest known Australian Tertiary mammal fauna. Nature. 356: 514-516.
-
(1992)
Nature
, vol.356
, pp. 514-516
-
-
Godthelp, H.1
Archer, M.2
Cifelli, R.L.3
Hand, S.J.4
Gilkeson, C.F.5
-
27
-
-
1642554676
-
Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision
-
Graur D., Martin, W. 2004. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 20:80-86.
-
(2004)
Trends Genet
, vol.20
, pp. 80-86
-
-
Graur, D.1
Martin, W.2
-
28
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
Haag-Liautard C., Dorris M., Maside X., Macaskill S., Halligan D.L., Houle D., Charlesworth B., Keightley P.D. 2007. Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature. 445:82-85.
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
MacAskill, S.4
Halligan, D.L.5
Houle, D.6
Charlesworth, B.7
Keightley, P.D.8
-
29
-
-
34047240363
-
Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor?
-
Haile J., Holdaway R., Oliver K., Bunce M., Gilbert M.T.P., Nielsen R., Munch K., Ho S.Y.W., Shapiro B., Willerslev E. 2007. Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor? Mol. Biol. Evol. 24:982-989.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 982-989
-
-
Haile, J.1
Holdaway, R.2
Oliver, K.3
Bunce, M.4
Gilbert, M.T.P.5
Nielsen, R.6
Munch, K.7
Ho, S.Y.W.8
Shapiro, B.9
Willerslev, E.10
-
30
-
-
2442667686
-
Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous
-
Harrison G.L., McLenachan P.A., Phillips M.J., Slack K.E., Cooper A., Penny D. 2004. Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol. Biol. Evol. 21:974-983.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 974-983
-
-
Harrison, G.L.1
McLenachan, P.A.2
Phillips, M.J.3
Slack, K.E.4
Cooper, A.5
Penny, D.6
-
31
-
-
17444422891
-
Dating nodes on molecular phylogenies: A critique of molecular biogeography
-
Heads M. 2005. Dating nodes on molecular phylogenies: a critique of molecular biogeography. Cladistics. 21:62-78.
-
(2005)
Cladistics
, vol.21
, pp. 62-78
-
-
Heads, M.1
-
32
-
-
1942422549
-
Precision of molecular time estimates
-
Hedges S.B., Kumar S. 2004. Precision of molecular time estimates. Trends Genet. 202:242-247.
-
(2004)
Trends Genet
, vol.202
, pp. 242-247
-
-
Hedges, S.B.1
Kumar, S.2
-
33
-
-
0029669270
-
Continental breakup and the ordinal diversification of birds and mammals
-
Hedges S.B., Parker P.H., Sibley C.G., Kumar S. 1996. Continental breakup and the ordinal diversification of birds and mammals. Nature. 381:226-229.
-
(1996)
Nature
, vol.381
, pp. 226-229
-
-
Hedges, S.B.1
Parker, P.H.2
Sibley, C.G.3
Kumar, S.4
-
34
-
-
0034702196
-
The genetic legacy of the Quaternary ice ages
-
Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907-913.
-
(2000)
Nature
, vol.405
, pp. 907-913
-
-
Hewitt, G.1
-
35
-
-
34347329101
-
Calibrating molecular estimates of substitution rates and divergence times in birds
-
Ho S.Y.W. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. J. Avian Biol. 38:409-414.
-
(2007)
J. Avian Biol.
, vol.38
, pp. 409-414
-
-
Ho, S.Y.W.1
-
36
-
-
67649133122
-
An examination of phylogenetic models of substitution rate variation among lineages
-
Ho S.Y.W. 2009. An examination of phylogenetic models of substitution rate variation among lineages. Biol. Lett. 5:421-424.
-
(2009)
Biol. Lett
, vol.5
, pp. 421-424
-
-
Ho, S.Y.W.1
-
37
-
-
38449100326
-
Elevated substitution rates estimated from ancient DNA
-
Ho S.Y.W., Kolokotronis S.-O., Allaby R.G. 2007. Elevated substitution rates estimated from ancient DNA. Biol. Lett. 3: 702-705.
-
(2007)
Biol. Lett
, vol.3
, pp. 702-705
-
-
Ho, S.Y.W.1
Kolokotronis, S.-O.2
Allaby, R.G.3
-
38
-
-
17744387938
-
Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation
-
Ho S.Y.W., Phillips M.J., Drummond A.J., Cooper A. 2005. Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation. Mol. Biol. Evol. 22: 1355-1363.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1355-1363
-
-
Ho, S.Y.W.1
Phillips, M.J.2
Drummond, A.J.3
Cooper, A.4
-
39
-
-
0037372985
-
The pedigree rate of sequence divergence in the human mitochondrial genome: There is a difference between phylo-genetic and pedigree rates
-
Howell N., Smejkal C.B., Mackey D.A., Chinnery P.F., Turnbull D.M., Herrnstadt C. 2003. The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylo-genetic and pedigree rates. Am. J. Hum. Genet. 72:659-670.
-
(2003)
Am. J. Hum. Genet.
, vol.72
, pp. 659-670
-
-
Howell, N.1
Smejkal, C.B.2
MacKey, D.A.3
Chinnery, P.F.4
Turnbull, D.M.5
Herrnstadt, C.6
-
40
-
-
34547762740
-
The impact of fossils and taxon sampling on ancient molecular dating analyses
-
Hug L.A., Roger A.J. 2007. The impact of fossils and taxon sampling on ancient molecular dating analyses. Mol. Biol. Evol. 24:1889-1897.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1889-1897
-
-
Hug, L.A.1
Roger, A.J.2
-
41
-
-
34547465760
-
Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1
-
Hugall A.F., Foster R., Lee M.S. 2007. Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1. Syst. Biol. 56:543-563.
-
(2007)
Syst. Biol.
, vol.56
, pp. 543-563
-
-
Hugall, A.F.1
Foster, R.2
Lee, M.S.3
-
42
-
-
0035103260
-
Performance of a divergence time estimation method under a probabilistic model of rate evolution
-
Kishino H., Thorne J.L., Bruno W.J. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18:352-361.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 352-361
-
-
Kishino, H.1
Thorne, J.L.2
Bruno, W.J.3
-
43
-
-
65549148462
-
Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: A general demographic model for mammals?
-
Korsten M., Ho S.Y.W., Davison J., Pähn B., Vulla E., Roht M., Tumanov I.L., Kojola I., Andersone-Lilley Z., Ozolins J., Pilot M., Mertzanis Y., Giannakopoulos A., Vorobiev A.A., Markov N.I., Saveljev A.P., Lyapunova E.A., Abramov A.V., Männil P., Valdmann H., Pazetnov S.V., Pazetnov V.S., Rõkov A.M., Saarma U. 2009. Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals? Mol. Ecol. 18: 1963-1979.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 1963-1979
-
-
Korsten, M.1
Ho, S.Y.W.2
Davison, J.3
Pähn, B.4
Vulla, E.5
Roht, M.6
Tumanov, I.L.7
Kojola, I.8
Andersone-Lilley, Z.9
Ozolins, J.10
Pilot, M.11
Mertzanis, Y.12
Giannakopoulos, A.13
Vorobiev, A.A.14
Markov, N.I.15
Saveljev, A.P.16
Lyapunova, E.A.17
Abramov, A.V.18
Männil, P.19
Valdmann, H.20
Pazetnov, S.V.21
Pazetnov, V.S.22
Rõkov, A.M.23
Saarma, U.24
more..
-
44
-
-
0037155593
-
Rates of evolution in ancient DNA from Adélie penguins
-
Lambert D.M., Ritchie P.A., Millar C.D., Holland B., Drummond A.J., Baroni C. 2002. Rates of evolution in ancient DNA from Adélie penguins. Science. 295:2270-2273.
-
(2002)
Science
, vol.295
, pp. 2270-2273
-
-
Lambert, D.M.1
Ritchie, P.A.2
Millar, C.D.3
Holland, B.4
Drummond, A.J.5
Baroni, C.6
-
45
-
-
0032855033
-
Molecular clock calibrations and metazoan divergence dates
-
Lee M.S.Y. 1999. Molecular clock calibrations and metazoan divergence dates. J. Mol. Evol. 49:385-391.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 385-391
-
-
Lee, M.S.Y.1
-
46
-
-
60349127526
-
Phylogenetic uncertainty and molecular clock calibrations: A case study of legless lizards (Pygopodidae, Gekkota)
-
Lee M.S.Y., Oliver M., Hutchinson N. 2009. Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota). Mol. Phylogenet. Evol. 50:661-666.
-
(2009)
Mol. Phylogenet. Evol.
, vol.50
, pp. 661-666
-
-
Lee, M.S.Y.1
Oliver, M.2
Hutchinson, N.3
-
47
-
-
0032844525
-
The molecular clock of HIV-1 unveiled through analysis of a known transmission history
-
Leitner T., Albert J. 1999. The molecular clock of HIV-1 unveiled through analysis of a known transmission history. Proc. Natl. Acad. Sci. USA. 96:10752-10757.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10752-10757
-
-
Leitner, T.1
Albert, J.2
-
49
-
-
32044457409
-
Continuous and tractable models for the variation of evolutionary rates
-
Lepage T., Tupper P., Bryant D., Lawi S. 2006. Continuous and tractable models for the variation of evolutionary rates. Math. Biosci. 199:216-233.
-
(2006)
Math. Biosci.
, vol.199
, pp. 216-233
-
-
Lepage, T.1
Tupper, P.2
Bryant, D.3
Lawi, S.4
-
50
-
-
18144364012
-
Taxon sampling effects in molecular clock dating: An example from the African Restionaceae
-
Linder H.P., Hardy C.R., Rutschmann F. 2005. Taxon sampling effects in molecular clock dating: an example from the African Restionaceae. Mol. Phylogenet. Evol. 35:569-582
-
(2005)
Mol. Phylogenet. Evol.
, vol.35
, pp. 569-582
-
-
Linder, H.P.1
Hardy, C.R.2
Rutschmann, F.3
-
51
-
-
4944255292
-
Dating lineages: Molecular and paleontological approaches to the temporal framework of clades
-
Magallón S. 2004. Dating lineages: molecular and paleontological approaches to the temporal framework of clades. Int. J. Plant Sci. 165:S7-S21.
-
(2004)
Int. J. Plant Sci.
, vol.165
-
-
Magallón, S.1
-
52
-
-
0030859884
-
Confidence intervals on stratigraphic ranges with non-random distributions of fossil horizons
-
Marshall C.R. 1997. Confidence intervals on stratigraphic ranges with non-random distributions of fossil horizons. Paleobiology. 23: 165-173.
-
(1997)
Paleobiology
, vol.23
, pp. 165-173
-
-
Marshall, C.R.1
-
53
-
-
43949092742
-
A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points
-
Marshall C.R. 2008. A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points. Am. Nat. 171:726-742.
-
(2008)
Am. Nat.
, vol.171
, pp. 726-742
-
-
Marshall, C.R.1
-
54
-
-
42049110943
-
How to summarize estimates of ancestral divergence times
-
Morrison D.A. 2008. How to summarize estimates of ancestral divergence times. Evol. Bioinf. 4:75-95.
-
(2008)
Evol. Bioinf.
, vol.4
, pp. 75-95
-
-
Morrison, D.A.1
-
55
-
-
27744565287
-
Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates
-
Muller J., Reisz R.R. 2005. Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates. Bioessays. 27:1069-1075.
-
(2005)
Bioessays
, vol.27
, pp. 1069-1075
-
-
Muller, J.1
Reisz, R.R.2
-
56
-
-
13944259078
-
Assessing concordance of fossil calibration points in molecular clock studies: An example using turtles
-
Near T.J., Meylan P.A., Shaffer H.B. 2005. Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles. Am. Nat. 165:137-146.
-
(2005)
Am. Nat.
, vol.165
, pp. 137-146
-
-
Near, T.J.1
Meylan, P.A.2
Shaffer, H.B.3
-
57
-
-
38349152557
-
Caveats on the use of fossil calibrations for molecular dating: A comment on Near et al
-
Parham J.F., Irmis R.B. 2008. Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al. Am. Nat. 171: 132-136.
-
(2008)
Am. Nat.
, vol.171
, pp. 132-136
-
-
Parham, J.F.1
Irmis, R.B.2
-
58
-
-
4544292696
-
The rise of birds and mammals: Are microevolutionary processes sufficient for macroevolution?
-
Penny D., Phillips M.J. 2004. The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution? Trends Ecol. Evol. 19:516-522.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 516-522
-
-
Penny, D.1
Phillips, M.J.2
-
59
-
-
0034939837
-
Can long-distance dispersal be inferred from the New Zealand plant fossil record?
-
Pole M.S. 2001. Can long-distance dispersal be inferred from the New Zealand plant fossil record? Aust. J. Bot. 49:357-366.
-
(2001)
Aust. J. Bot.
, vol.49
, pp. 357-366
-
-
Pole, M.S.1
-
60
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada D., Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
61
-
-
38149012877
-
Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe
-
Rajabi-Maham H., Orth A., Bonhomme F. 2008. Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe. Mol. Ecol. 17:627-641.
-
(2008)
Mol. Ecol
, vol.17
, pp. 627-641
-
-
Rajabi-Maham, H.1
Orth, A.2
Bonhomme, F.3
-
62
-
-
0034044313
-
Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut A. 2000. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics. 16:395-399.
-
(2000)
Bioinformatics
, vol.16
, pp. 395-399
-
-
Rambaut, A.1
-
63
-
-
0031966291
-
Estimating divergence dates from molecular sequences
-
Rambaut A., Bromham L. 1998. Estimating divergence dates from molecular sequences. Mol. Biol. Evol. 15:442-448.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 442-448
-
-
Rambaut, A.1
Bromham, L.2
-
64
-
-
34548556039
-
Inferring speciation times under an episodic molecular clock
-
Rannala B., Yang Z. 2007. Inferring speciation times under an episodic molecular clock. Syst. Biol. 56:453-466.
-
(2007)
Syst. Biol.
, vol.56
, pp. 453-466
-
-
Rannala, B.1
Yang, Z.2
-
65
-
-
22144487208
-
IntCal04 terrestrial radiocarbon age calibration, 0-26 cal kyr BP
-
Reimer P.J., Baillie M.G.L., Bard E., Bayliss A., Beck J.W., Bertrand C.J.H., Blackwell P.G., Buck C.E., Burr G.S., Cutler K.B., Damon P.E., Edwards R.L., Fairbanks R.G., Friedrich M., Guilderson T.P., Hogg A.G., Hughen K.A., Kromer B., McCormac G., Manning S., Bronk Ramsey C., Reimer R.W., Remmele S., Southon J.R., Stuiver M., Talamo S., Taylor F.W., van der Plicht V., Weyhenmeyer C.E. 2004. IntCal04 terrestrial radiocarbon age calibration, 0-26 cal kyr BP. Radiocarbon. 46:1029-1058.
-
(2004)
Radiocarbon
, vol.46
, pp. 1029-1058
-
-
Reimer, P.J.1
Baillie, M.G.L.2
Bard, E.3
Bayliss, A.4
Beck, J.W.5
Bertrand, C.J.H.6
Blackwell, P.G.7
Buck, C.E.8
Burr, G.S.9
Cutler, K.B.10
Damon, P.E.11
Edwards, R.L.12
Fairbanks, R.G.13
Friedrich, M.14
Guilderson, T.P.15
Hogg, A.G.16
Hughen, K.A.17
Kromer, B.18
McCormac, G.19
Manning, S.20
Bronk Ramsey, C.21
Reimer, R.W.22
Remmele, S.23
Southon, J.R.24
Stuiver, M.25
Talamo, S.26
Taylor, F.W.27
Van Der Plicht, V.28
Weyhenmeyer, C.E.29
more..
-
66
-
-
27644548127
-
Relaxed molecular clocks for dating historical plant dispersal events
-
Renner S.S. 2005. Relaxed molecular clocks for dating historical plant dispersal events. Trends Plant Sci. 10:1360-1385.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 1360-1385
-
-
Renner, S.S.1
-
67
-
-
33645030825
-
Molecular dating of phylogenetic trees: A brief review of current methods that estimate divergence times
-
Rutschmann F. 2006. Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times. Diversity Distrib. 12:35-48.
-
(2006)
Diversity Distrib
, vol.12
, pp. 35-48
-
-
Rutschmann, F.1
-
68
-
-
33846106428
-
Mitogenetic structure of brown bears (Ursus arctos L.) in northeastern Europe and a new time-frame for the formation of brown bear lineages
-
Saarma U., Ho S.Y.W., Pybus O.G., Kaljuste M., Tumanov I.M., Kojola I., Vorobiev A.A., Markov N.I., SaveljevA.P., Valdmann A., Lyapunova E.A., Abramov A.V., Männil P., Korsten M., Vulla E., Pazetnov S.V., Pazetnov V.S., Putchkovskiy S.V., Rõkov A.M. 2007. Mitogenetic structure of brown bears (Ursus arctos L.) in northeastern Europe and a new time-frame for the formation of brown bear lineages. Mol. Ecol. 16:401-413.
-
(2007)
Mol. Ecol.
, vol.16
, pp. 401-413
-
-
Saarma, U.1
Ho, S.Y.W.2
Pybus, O.G.3
Kaljuste, M.4
Tumanov, I.M.5
Kojola, I.6
Vorobiev, A.A.7
Saveljeva, P.I.M.N.8
Valdmann, A.9
Lyapunova, E.A.10
Abramov, A.V.11
Männil, P.12
Korsten, M.13
Vulla, E.14
Pazetnov, S.V.15
Pazetnov, V.S.16
Putchkovskiy, S.V.17
Rõkov, A.M.18
-
69
-
-
34547481471
-
Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds
-
Sanders K.L., Lee M.S. 2007. Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds. Biol. Lett. 3:275-279.
-
(2007)
Biol. Lett.
, vol.3
, pp. 275-279
-
-
Sanders, K.L.1
Lee, M.S.2
-
70
-
-
0030773749
-
A nonparametric approach to estimating divergence times in the absence of rate constancy
-
Sanderson M.J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-1231.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1218-1231
-
-
Sanderson, M.J.1
-
71
-
-
0036135468
-
Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
-
Sanderson M.J. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19:101-109.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 101-109
-
-
Sanderson, M.J.1
-
72
-
-
0037314098
-
R8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson M.J. 2003. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics. 19:301-302.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
73
-
-
33646886799
-
Early penguin fossils, plus mito-chondrial genomes, calibrate avian evolution
-
Slack K.E., Jones C.M., Ando T., Harrison G.L., Fordyce R.E., Arnason U., Penny D. 2006. Early penguin fossils, plus mito-chondrial genomes, calibrate avian evolution. Mol. Biol. Evol. 23: 1144-1155.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1144-1155
-
-
Slack, K.E.1
Jones, C.M.2
Ando, T.3
Harrison, G.L.4
Fordyce, R.E.5
Arnason, U.6
Penny, D.7
-
74
-
-
0001556362
-
Classical confidence intervals and Bayesian probability estimates for ends of local taxon ranges
-
Strauss D., Sadler P.M. 1989. Classical confidence intervals and Bayesian probability estimates for ends of local taxon ranges. Math. Geology. 21:411-427.
-
(1989)
Math. Geology.
, vol.21
, pp. 411-427
-
-
Strauss, D.1
Sadler, P.M.2
-
75
-
-
58149250135
-
Consistent estimation of divergence times in phylogenetic trees with local molecular clocks
-
Svennblad B. 2008. Consistent estimation of divergence times in phylogenetic trees with local molecular clocks. Syst. Biol. 57: 947-954.
-
(2008)
Syst. Biol.
, vol.57
, pp. 947-954
-
-
Svennblad, B.1
-
76
-
-
0029100727
-
Phylogenetic test of the molecular clock and linearized trees
-
Takezaki N., Rzhetsky A., Nei M. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-833
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 823-833
-
-
Takezaki, N.1
Rzhetsky, A.2
Nei, M.3
-
77
-
-
0037129204
-
Using the fossil record to estimate the age of the last common ancestor of extant primates
-
Ta v a r é S., Marshall C.R., Will O., Soligo C., Martin R.D. 2002. Using the fossil record to estimate the age of the last common ancestor of extant primates. Nature. 416:726-729.
-
(2002)
Nature
, vol.416
, pp. 726-729
-
-
Tavaré, S.1
-
78
-
-
0036803223
-
Divergence time and evolutionary rate estimation with multilocus data
-
Thorne J.L., Kishino H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51:689-702.
-
(2002)
Syst. Biol.
, vol.51
, pp. 689-702
-
-
Thorne, J.L.1
Kishino, H.2
-
79
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J.L., Kishino H., Painter I.S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15: 1647-1657.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
80
-
-
36549023365
-
Back to the future: Museum specimens in population genetics
-
Wandeler P., Hoeck P.E.A., Keller L.F. 2007. Back to the future: museum specimens in population genetics. Trends Ecol. Evol. 22: 634-642.
-
(2007)
Trends Ecol. Evol.
, vol.22
, pp. 634-642
-
-
Wandeler, P.1
Hoeck, P.E.A.2
Keller, L.F.3
-
81
-
-
23944447130
-
Evolution, systematics, and phylogeog-raphy of Pleistocene horses in the New World: A molecular perspective
-
Weinstock J., Willerslev E., Sher A., Tong W., Ho S.Y.W., Rubinstein D., Storer J., Burns J., Martin L., Bravi C., Prieto A., Froese D., Scott E., Xulong L., Cooper A. 2005. Evolution, systematics, and phylogeog-raphy of Pleistocene horses in the New World: a molecular perspective. PLoS Biol. 3:e241.
-
(2005)
PLoS Biol
, vol.3
-
-
Weinstock, J.1
Willerslev, E.2
Sher, A.3
Tong, W.4
Ho, S.Y.W.5
Rubinstein, D.6
Storer, J.7
Burns, J.8
Martin, L.9
Bravi, C.10
Prieto, A.11
Froese, D.12
Scott, E.13
Xulong, L.14
Cooper, A.15
-
82
-
-
20144362109
-
Molecular dating when rates vary
-
Welch J.J., Bromham L. 2005. Molecular dating when rates vary. Trends Ecol. Evol. 20:320-327.
-
(2005)
Trends Ecol. Evol
, vol.20
, pp. 320-327
-
-
Welch, J.J.1
Bromham, L.2
-
83
-
-
34447337482
-
Ancient biomolecules from deep ice cores reveal a forested southern Greenland
-
Willerslev E., Cappellini E., Boomsma W., Nielsen R., Hebsgaard M.B., Brand R.B., Hofreiter M., Bunce M., Poinar H.N., Dahl-Jensen D., Johnsen, S., Steffensen J.P., Bennike O., Schwenninger J.L., Nathan R., Armitage S., de Hoog C.J., Alfimov V., Christl M., Beer M., Muscheler R., Barker J., Sharp M., Penkman K.E., Haile J., Taberlet P., Gilbert M.T., Casoli A., Campani E., Collins M.J. 2007. Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science. 317:111-114.
-
(2007)
Science
, vol.317
, pp. 111-114
-
-
Willerslev, E.1
Cappellini, E.2
Boomsma, W.3
Nielsen, R.4
Hebsgaard, M.B.5
Brand, R.B.6
Hofreiter, M.7
Bunce, M.8
Poinar, H.N.9
Dahl-Jensen, D.10
Johnsen, S.11
Steffensen, J.P.12
Bennike, O.13
Schwenninger, J.L.14
Nathan, R.15
Armitage, S.16
De Hoog, C.J.17
Alfimov, V.18
Christl, M.19
Beer, M.20
Muscheler, R.21
Barker, J.22
Sharp, M.23
Penkman, K.E.24
Haile, J.25
Taberlet, P.26
Gilbert, M.T.27
Casoli, A.28
Campani, E.29
Collins, M.J.30
more..
-
85
-
-
0001572733
-
Dispersal, vicariance, and the Late Cretaceous to early Tertiary land mammal biogeography from South America to Australia
-
Woodburne M.O., Case J.A. 1996. Dispersal, vicariance, and the Late Cretaceous to early Tertiary land mammal biogeography from South America to Australia. J. Mammal. Evol. 3:121-161.
-
(1996)
J. Mammal. Evol.
, vol.3
, pp. 121-161
-
-
Woodburne, M.O.1
Case, J.A.2
-
86
-
-
28944451210
-
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
-
Yang Z., Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 23:212-226.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 212-226
-
-
Yang, Z.1
Rannala, B.2
-
87
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder A.D., Yang Z.H. 2000. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17:1081-1090.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1081-1090
-
-
Yoder, A.D.1
Yang, Z.H.2
-
88
-
-
0002331493
-
Molecular disease, evolution and genic heterogeneity
-
Kasha M., Pullman B., editors New York: Academic Press
-
Zuckerkandl E., Pauling L. 1962. Molecular disease, evolution and genic heterogeneity. In: Kasha M., Pullman B., editors. Horizons in biochemistry. New York: Academic Press. p. 189-225
-
(1962)
Horizons in Biochemistry
, pp. 189-225
-
-
Zuckerkandl, E.1
Pauling, L.2
-
89
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
Bryson V., Vogel H.J., editors New York: Academic Press
-
Zuckerkandl E., Pauling L. 1965. Evolutionary divergence and convergence in proteins. In: Bryson V., Vogel H.J., editors. Evolving genes and proteins. New York: Academic Press. p. 97-166.
-
(1965)
Evolving Genes and Proteins
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
|