Dietary Fat Content and Fiber Type Modulate Hind Gut Microbial Community and Metabolic Markers in the Pig

PLoS ONE

Volumn 8, Issue 4, 2013, Pages

  Yan, Hui ^a   Potu, Ramesh ^a   Lu, Hang ^a   Vezzoni de Almeida, Vivian ^b   Stewart, Terry ^a   Ragland, Darryl ^a   Armstrong, Arthur ^a   Adeola, Olayiwola ^a   Nakatsu, Cindy H ^a   Ajuwon, Kolapo M ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A OXIDASE; CELLULOSE; FRUCTOSE OLIGOSACCHARIDE; INULIN; RNA 16S; STEROL REGULATORY ELEMENT BINDING PROTEIN 1C; VOLATILE FATTY ACID;

ADIPOSE TISSUE; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CECUM; CLUSTER ANALYSIS; COMMUNITY STRUCTURE; CONTROLLED STUDY; CORRESPONDENCE ANALYSIS; DENATURING GRADIENT GEL ELECTROPHORESIS; DIETARY FIBER; FAT INTAKE; FAT MASS; FATTY ACID OXIDATION; GENE EXPRESSION; INTESTINE; INTESTINE FLORA; LIPID DIET; LIPID STORAGE; LIVER; MARKER GENE; METABOLIC DISORDER; METABOLISM; MICROBIAL COMMUNITY; NONHUMAN; OBESITY; PEROXISOME; POLYMERASE CHAIN REACTION; PROTEIN EXPRESSION; SWINE; WEIGHT GAIN;

ACYL-COA OXIDASE; ANIMALS; BACK; BACTEROIDES; BIFIDOBACTERIUM; BIOLOGICAL MARKERS; CECUM; CELLULOSE; DENATURING GRADIENT GEL ELECTROPHORESIS; DIET, HIGH-FAT; DIETARY FATS; DIETARY FIBER; FEMALE; FERMENTATION; INULIN; METAGENOME; MOLECULAR TYPING; PRINCIPAL COMPONENT ANALYSIS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, RNA; STEROL REGULATORY ELEMENT BINDING PROTEIN 1; SUBCUTANEOUS FAT; SUS SCROFA;

BACTERIA (MICROORGANISMS); SUIDAE;

EID: 84875753000     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059581     Document Type: Article

References (51)

1. Ley RE, Turnbaugh PJ, Klein S, Gordon JI, (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
2. Pang X, Hua X, Yang Q, Ding D, Che C, et al. (2007) Inter-species transplantation of gut microbiota from human to pigs. ISME J 1: 156-162.
3. Gibson GR, Probert HM, Loo JV, Rastall RA, Roberfroid MB, (2004) Dietary modulation of the human colonic microbiota: updating the concept of prebiotics. Nutr Res Rev 17: 259-275.
4. Topping DL, Clifton PM, (2001) Short-chain fatty acids and human colonic function: roles of resistant starch and nonstarch polysaccharides. Physiol Rev 81: 1031-1064.
5. Liu H, Ivarsson E, Dicksved J, Lundh T, Lindberg JE, (2012) Inclusion of chicory (Cichorium intybus L.) in pigs' diets affects the intestinal microenvironment and the gut microbiota. Appl Environ Microbiol 78: 4102-4109.
6. de Lange CFM, Pluske J, Gong J, Nyachoti CM, (2010) Strategic use of feed ingredients and feed additives to stimulate gut health and development in young pigs. Livestock Science 134: 124-134.
7. Weickert MO, Pfeiffer AF, (2008) Metabolic effects of dietary fiber consumption and prevention of diabetes. J Nutr 138: 439-442.
8. Jenkins DJ, Kendall CW, Axelsen M, Augustin LS, Vuksan V, (2000) Viscous and nonviscous fibres, nonabsorbable and low glycaemic index carbohydrates, blood lipids and coronary heart disease. Curr Opin Lipidol 11: 49-56.
9. de Munter JSL, Hu FB, Spiegelman D, Franz M, van Dam RM, (2007) Whole Grain, Bran, and Germ Intake and Risk of Type 2 Diabetes: A Prospective Cohort Study and Systematic Review. PLoS Med 4: e261.
10. Backhed F, Manchester JK, Semenkovich CF, Gordon JI, (2007) Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. Proc Natl Acad Sci U S A 104: 979-984.
11. Muyzer G, de Waal EC, Uitterlinden AG, (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
12. Playne MJ, (1985) Determination of Ethanol, Volatile Fatty-Acids, Lactic and Succinic Acids in Fermentation Liquids by Gas-Chromatography. J Sci Food Agr 36: 638-644.
13. Ariefdjohan MW, Savaiano DA, Nakatsu CH, (2010) Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens. Nutr J 9: 23.
14. Nakatsu CH, Torsvik V, Ovreas L, (2000) Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci Soc Am J 64: 1382-1388.
15. Nakatsu CH, (2007) Soil microbial community analysis using denaturing gradient gel electrophoresis. Soil Sci Soc Am J 71: 562-571.
16. Dice LR, (1945) Measures of the amount of ecologic association between species. Ecology 26: 297-302.
17. Fromin N, Hamelin J, Tarnawski S, Roesti D, Jourdain-Miserez K, et al. (2002) Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4: 634-643.
18. Wilbur JD, Ghosh JK, Nakatsu CH, Brouder SM, Doerge RW, (2002) Variable selection in high-dimensional multivariate binary data with application to the analysis of microbial community DNA fingerprints. Biometrics 58: 378-386.
19. Zhang Z, Schwartz S, Wagner L, Miller W, (2000) A greedy algorithm for aligning DNA sequences. J Comput Biol 7: 203-214.
20. Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, et al. (2007) The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35: D169-172.
21. Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
22. Clarke KR, (1993) Non-parametric multivariate analyses of changes in community structure. Austral Ecology 18: 117-143.
23. Hammer Ø HD, Ryan PD, (2001) PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica 4: 9pp.
24. Palmer M, (1993) Putting things in even better order - the advantages of canonical correspondence-analysis. Ecology 74: 2215-2230.
25. McCune B, Mefford MJ (2011) PC-ORD: Multivariate Analysis of Ecological Data: MjM Software Design.
26. Ott SJ, Musfeldt M, Ullmann U, Hampe J, Schreiber S, (2004) Quantification of intestinal bacterial populations by real-time PCR with a universal primer set and minor groove binder probes: a global approach to the enteric flora. J Clin Microbiol 42: 2566-2572.
27. West DB, York B, (1998) Dietary fat, genetic predisposition, and obesity: lessons from animal models. Am J Clin Nutr 67: 505S-512S.
28. Slavin JL, (2005) Dietary fiber and body weight. Nutrition 21: 411-418.
29. Howarth NC, Saltzman E, Roberts SB, (2001) Dietary fiber and weight regulation. Nutr Rev 59: 129-139.
30. Isken F, Klaus S, Osterhoff M, Pfeiffer AF, Weickert MO, (2010) Effects of long-term soluble vs. insoluble dietary fiber intake on high-fat diet-induced obesity in C57BL/6J mice. J Nutr Biochem 21: 278-284.
31. Lazarow PB, De Duve C, (1976) A fatty acyl-CoA oxidizing system in rat liver peroxisomes; enhancement by clofibrate, a hypolipidemic drug. Proc Natl Acad Sci U S A 73: 2043-2046.
32. Wolfgang MJ, Kurama T, Dai Y, Suwa A, Asaumi M, et al. (2006) The brain-specific carnitine palmitoyltransferase-1c regulates energy homeostasis. Proc Natl Acad Sci U S A 103: 7282-7287.
33. Foretz M, Guichard C, Ferré P, Foufelle F, (1999) Sterol regulatory element binding protein-1c is a major mediator of insulin action on the hepatic expression of glucokinase and lipogenesis-related genes. Proceedings of the National Academy of Sciences 96: 12737-12742.
34. Horton JD, Goldstein JL, Brown MS, (2002) SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver. The Journal of Clinical Investigation 109: 1125-1131.
35. Duplus E, Forest C, (2002) Is there a single mechanism for fatty acid regulation of gene transcription? Biochemical Pharmacology 64: 893-901.
36. Ou J, Tu H, Shan B, Luk A, DeBose-Boyd RA, et al. (2001) Unsaturated fatty acids inhibit transcription of the sterol regulatory element-binding protein-1c (SREBP-1c) gene by antagonizing ligand-dependent activation of the LXR. Proceedings of the National Academy of Sciences 98: 6027-6032.
37. Backhed F, Ding H, Wang T, Hooper LV, Koh GY, et al. (2004) The gut microbiota as an environmental factor that regulates fat storage. PNAS 101: 15718-15723.
38. Tennyson CA, Friedman G, (2008) Microecology, obesity, and probiotics. Curr Opin Endocrinol Diabetes Obes 15: 422-427.
39. Vaughan EE, Schut F, Heilig HG, Zoetendal EG, de Vos WM, et al. (2000) A molecular view of the intestinal ecosystem. Curr Issues Intest Microbiol 1: 1-12.
40. Rossi M, Corradini C, Amaretti A, Nicolini M, Pompei A, et al. (2005) Fermentation of fructooligosaccharides and inulin by bifidobacteria: a comparative study of pure and fecal cultures. Appl Environ Microbiol 71: 6150-6158.
41. Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, et al. (2009) Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. Br J Nutr 101: 541-550.
42. Kageyama A, Benno Y, (2000) Catenibacterium mitsuokai gen. nov., sp. nov., a gram-positive anaerobic bacterium isolated from human faeces. Int J Syst Evol Microbiol 50 Pt 4: 1595-1599.
43. Liu C, Finegold SM, Song Y, Lawson PA, (2008) Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58: 1896-1902.
44. Falony G, Verschaeren A, De Bruycker F, De Preter V, Verbeke K, et al. (2009) In vitro kinetics of prebiotic inulin-type fructan fermentation by butyrate-producing colon bacteria: implementation of online gas chromatography for quantitative analysis of carbon dioxide and hydrogen gas production. Appl Environ Microbiol 75: 5884-5892.
45. Scott KP, Martin JC, Chassard C, Clerget M, Potrykus J, et al. (2011) Substrate-driven gene expression in Roseburia inulinivorans: importance of inducible enzymes in the utilization of inulin and starch. Proc Natl Acad Sci U S A 108Suppl 1: 4672-4679.
46. Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, et al. (2005) Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 102: 11070-11075.
47. DiBaise JK, Zhang H, Crowell MD, Krajmalnik-Brown R, Decker GA, et al. (2008) Gut microbiota and its possible relationship with obesity. Mayo Clin Proc 83: 460-469.
48. Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, et al. (2008) Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes 32: 1720-1724.
49. Louis P, Flint HJ, (2009) Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 294: 1-8.
50. Scheppach W, Weiler F, (2004) The butyrate story: old wine in new bottles? Curr Opin Clin Nutr Metab Care 7: 563-567.
51. Hamer HM, Jonkers D, Venema K, Vanhoutvin S, Troost FJ, et al. (2008) Review article: the role of butyrate on colonic function. Aliment Pharmacol Ther 27: 104-119.