Carbonyl carbon transverse relaxation dispersion measurements and ms-μ s timescale motion in a protein hydrogen bond network

Journal of Biomolecular NMR

Volumn 29, Issue 2, 2004, Pages 187-198

  Ishima, Rieko ^a   Baber, James ^b   Louis, John M ^b   Torchia, Dennis A ^a  

^a NATIONAL INSTITUTE OF DENTAL AND CRANIOFACIAL RESEARCH   (United States)

^b NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

Chemical exchange; Conformational change; CPMG; NMR; R2

Indexed keywords

4,7 DIBENZYL 2,3,4,5,6,7 HEXAHYDRO 5,6 DIHYDROXY 1,3 BIS[4 (HYDROXYMETHYL)BENZYL] 2H 1,3 DIAZEPIN 2 ONE; CARBON 13; CARBONYL DERIVATIVE; HYDROGEN; NITROGEN 15; PROTEINASE; PROTEINASE INHIBITOR;

ARTICLE; BETA SHEET; COMPUTER SIMULATION; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DISPERSION; HUMAN IMMUNODEFICIENCY VIRUS; HYDROGEN BOND; ISOTOPE LABELING; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN STRUCTURE; RELAXATION TIME; STRUCTURE ANALYSIS;

CARBON; COMPUTER SIMULATION; ENZYME INHIBITORS; HIV PROTEASE; HYDROGEN BONDING; MUTATION; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION;

HUMAN IMMUNODEFICIENCY VIRUS 1; MUS;

EID: 1842503159     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:JNMR.0000019249.50306.5d     Document Type: Article

References (28)

1. Cavanagh, J., Fairbrother, W.J., Palmer, r., A.G. and Skelton, N.J. (1996) Protein NMR Spectroscopy, Academic Press, San Diego, pp. 135.
2. Cornilescu, G. and Bax, A. (2000) J. Am. Chem. Soc., 122, 10143-10154.
3. Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) J. Biomol. NMR, 6, 277-293.
4. Ernst, R.R., Bodenhausen, G. and Wokaun, A. (1987) Principles of Nuclear Magnetic Resonance in One and Two Dimensions, Clarendon Press, Oxford.
5. Garrett, D.S., Powers, R., Gronenborn, A.M. and Clore, G.M. (1991) J. Magn. Reson., 95, 214-220.
6. Geen, H. and Freeman, R. (1991) J. Mag. Reson., 93, 93-141.
7. Hu, J.S. and Bax, A. (1996) J. Am. Chem. Soc., 118, 8170-8171.
8. Hu, J.S., Grzesiek, S. and Bax, A. (1997) J. Am. Chem. Soc., 119, 1803-1804.
9. Ishima, R., Freedberg, D.I., Wang, Y.X., Louis, J.M. and Torchia, D.A. (1999) Structure, 7, 1047-1055.
10. Ishima, R., Louis, J.M. and Torchia, D.A. (2001) J. Mol. Biol., 305, 515-521.
11. Ishima, R. and Torchia, D.A. (2003) J. Biomol. NMR, 25, 243-348.
12. Ishima, R., Wingfield, P.T., Stahl, S.J., Kaufman, J.D. and Torchia, D.A. (1998) J. Am. Chem. Soc., 120, 10534-10542.
13. Katoh, E., Louis, J.M., Yamazaki, T., Gronenborn, A.M., Torchia, D.A. and Ishima, R. (2003) Protein Sci., 12, 1376-1385.
14. Loria, J.P., Rance, M. and Palmer, A.G. (1999) J. Am. Chem. Soc., 121, 2331-2332.
15. Louis, J.M., Ishima, R., Nesheiwat, I., Pannell, L.K., Lynch, S.M., Torchia, D.A. and Gronenborn, A.M. (2003) J. Biol. Chem., 278, 6085-6092.
16. Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989) J. Magn. Reson., 85, 393-399.
17. Matsuo, H., Kupce, E., Li, H.J. and Wagner, G. (1996) J. Magn. Reson. Ser. B., 113, 91-96.
18. Millet, O., Loria, J.P., Kroenke C.D. and Palmer A.G. (2000) J. Am. Chem. Soc., 122, 2867-2877.
19. Mulder, F.A.A. and Akke, M. (2003) Magn. Reson. Chem., 41, 853-865.
20. Mulder, F.A.A., Hon, B., Mittermaier, A., Dahlquist, F.W. and Kay, L.E. (2002) J. Am. Chem. Soc., 124, 1443-1451.
21. Mulder, F.A.A., Skrynnikov, N.R., Hon, B., Dahlquist, F.W. and Kay, L.E. (2001) J. Am. Chem. Soc., 123, 967-975.
22. Neal, S., Nip, A.M., Zhang, H. and Wishart, D.S. (2003) J. Biomol. NMR, 26, 215-240.
23. Palmer, A.G., Kroenke, C.D. and Loria, J.P. (2001) Meth. Enzymol., 339, 204-238.
24. Skrynnikov, N.R., Dahlquist, F.W. and Kay, L.E. (2002) J. Am. Chem. Soc., 124, 12352-12360.
25. Skrynnikov, N.R., Mulder, F.A.A., Hon, B., Dahlquist, F.W. and Kay, L.E. (2001) J. Am. Chem. Soc., 123, 4556-4566.
26. Stryer, L. (1995) In Biochemistry, W.H. Freeman and Company, New York, pp. 713-738.
27. Tollinger, M., Skrynnikov, N.R., Mulder, F.A.A., Forman-Kay, J.D. and Kay, L.E. (2001) J. Am. Chem. Soc., 123, 11341-11352.
28. Yamazaki, T., Hinck, A.P., Wang, Y.X., Nicholson, L.K., Torchia, D.A. Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C.H., Domaille, P.J. and Lam, P.Y. (1996) Protein Sci., 5, 495-506.