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Volumn 53, Issue 3, 2013, Pages 534-544

Locating sweet spots for screening hits and evaluating pan-assay interference filters from the performance analysis of two lead-like libraries

Author keywords

[No Author keywords available]

Indexed keywords

ALIPHATIC COMPOUNDS; CHEMICAL ANALYSIS; EFFICIENCY; LIBRARIES;

EID: 84875421001     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci300382f     Document Type: Article
Times cited : (23)

References (42)
  • 2
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski, C. A.; Lombardo, F.; Dominy, B. W.; Feeney, P. J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings Adv. Drug Delivery Rev. 1997, 23, 3-25
    • (1997) Adv. Drug Delivery Rev. , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 3
    • 0035324944 scopus 로고    scopus 로고
    • Molecular complexity and its impact on the probability of finding leads for drug discovery
    • Hann, M. M.; Leach, A. R.; Harper, G. Molecular complexity and its impact on the probability of finding leads for drug discovery J. Chem. Inf. Comput. Sci. 2001, 41, 856-864
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 856-864
    • Hann, M.M.1    Leach, A.R.2    Harper, G.3
  • 4
    • 0035438391 scopus 로고    scopus 로고
    • Is there a difference between leads and drugs? A historical perspective
    • Oprea, T. I.; Davis, A. M.; Teague, S. J.; Leeson, P. D. Is there a difference between leads and drugs? A historical perspective J. Chem. Inf. Comput. Sci. 2001, 41, 1308-1315
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1308-1315
    • Oprea, T.I.1    Davis, A.M.2    Teague, S.J.3    Leeson, P.D.4
  • 5
    • 33644855557 scopus 로고    scopus 로고
    • Recent developments in focused library design: Targeting gene-families
    • Miller, J. L. Recent developments in focused library design: Targeting gene-families Curr. Top. Med. Chem. 2006, 6, 19-29
    • (2006) Curr. Top. Med. Chem. , vol.6 , pp. 19-29
    • Miller, J.L.1
  • 6
    • 84856134589 scopus 로고    scopus 로고
    • Lead-oriented synthesis: A new opportunity for synthetic chemistry
    • Nadin, A.; Hattotuwagama, C.; Churcher, I. Lead-oriented synthesis: a new opportunity for synthetic chemistry Angew. Chem. 2012, 51, 1114-1122
    • (2012) Angew. Chem. , vol.51 , pp. 1114-1122
    • Nadin, A.1    Hattotuwagama, C.2    Churcher, I.3
  • 7
    • 34247194965 scopus 로고    scopus 로고
    • Virtual exploration of the chemical universe up to 11 atoms of C, N, O, F: Assembly of 26.4 million structures (110.9 million stereoisomers) and analysis for new ring systems, stereochemistry, physicochemical properties, compound classes, and drug discovery
    • Fink, T.; Reymond, J. L. Virtual exploration of the chemical universe up to 11 atoms of C, N, O, F: Assembly of 26.4 million structures (110.9 million stereoisomers) and analysis for new ring systems, stereochemistry, physicochemical properties, compound classes, and drug discovery J. Chem. Inf. Model. 2007, 47, 342-353
    • (2007) J. Chem. Inf. Model. , vol.47 , pp. 342-353
    • Fink, T.1    Reymond, J.L.2
  • 9
    • 77950571108 scopus 로고    scopus 로고
    • New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays
    • Baell, J. B.; Holloway, G. A. New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays J. Med. Chem. 2010, 53, 2719-2740
    • (2010) J. Med. Chem. , vol.53 , pp. 2719-2740
    • Baell, J.B.1    Holloway, G.A.2
  • 10
    • 77952545106 scopus 로고    scopus 로고
    • Apparent activity in high-throughput screening: Origins of compound-dependent assay interference
    • Thorne, N.; Auld, D. S.; Inglese, J. Apparent activity in high-throughput screening: origins of compound-dependent assay interference Curr. Opin. Chem. Biol. 2010, 14, 315-324
    • (2010) Curr. Opin. Chem. Biol. , vol.14 , pp. 315-324
    • Thorne, N.1    Auld, D.S.2    Inglese, J.3
  • 11
    • 78650674952 scopus 로고    scopus 로고
    • False positives in the early stages of drug discovery
    • Sink, R.; Gobec, S.; Pecar, S.; Zega, A. False positives in the early stages of drug discovery Curr. Med. Chem. 2010, 17, 4231-4255
    • (2010) Curr. Med. Chem. , vol.17 , pp. 4231-4255
    • Sink, R.1    Gobec, S.2    Pecar, S.3    Zega, A.4
  • 12
    • 84862023493 scopus 로고    scopus 로고
    • Chemical and biological properties of frequent screening hits
    • Che, J.; King, F. J.; Zhou, B.; Zhou, Y. Chemical and biological properties of frequent screening hits J. Chem. Inf. Model. 2012, 52, 913-926
    • (2012) J. Chem. Inf. Model. , vol.52 , pp. 913-926
    • Che, J.1    King, F.J.2    Zhou, B.3    Zhou, Y.4
  • 13
  • 14
    • 80054963749 scopus 로고    scopus 로고
    • Mining the ChEMBL database: An efficient chemoinformatics workflow for assembling an ion channel-focused screening library
    • Mok, N. Y.; Brenk, R. Mining the ChEMBL database: An efficient chemoinformatics workflow for assembling an ion channel-focused screening library J. Chem. Inf. Model. 2011, 51, 2449-2454
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 2449-2454
    • Mok, N.Y.1    Brenk, R.2
  • 17
    • 80053920610 scopus 로고    scopus 로고
    • Dihydroquinazolines as a novel class of Trypanosoma brucei trypanothione reductase inhibitors: Discovery, synthesis, and characterization of their binding mode by protein crystallography
    • Patterson, S.; Alphey, M. S.; Jones, D. C.; Shanks, E. J.; Street, I. P.; Frearson, J. A.; Wyatt, P. G.; Gilbert, I. H.; Fairlamb, A. H. Dihydroquinazolines as a novel class of Trypanosoma brucei trypanothione reductase inhibitors: discovery, synthesis, and characterization of their binding mode by protein crystallography J. Med. Chem. 2011, 54, 6514-6530
    • (2011) J. Med. Chem. , vol.54 , pp. 6514-6530
    • Patterson, S.1    Alphey, M.S.2    Jones, D.C.3    Shanks, E.J.4    Street, I.P.5    Frearson, J.A.6    Wyatt, P.G.7    Gilbert, I.H.8    Fairlamb, A.H.9
  • 19
    • 84866244446 scopus 로고    scopus 로고
    • IspE inhibitors identified by a combination of in silico and in vitro high-throughput screening
    • Tidten-Luksch, N.; Grimaldi, R.; Torrie, L. S.; Frearson, J. A.; Hunter, W. N.; Brenk, R. IspE inhibitors identified by a combination of in silico and in vitro high-throughput screening PloS one 2012, 7, e35792
    • (2012) PloS One , vol.7 , pp. 35792
    • Tidten-Luksch, N.1    Grimaldi, R.2    Torrie, L.S.3    Frearson, J.A.4    Hunter, W.N.5    Brenk, R.6
  • 20
    • 0029086385 scopus 로고
    • The Picornaviral 3C proteinases - Cysteine nucleophiles in serine proteinase folds
    • Malcolm, B. A. The Picornaviral 3C proteinases-cysteine nucleophiles in serine proteinase folds Protein Sci. 1995, 4, 1439-1445
    • (1995) Protein Sci. , vol.4 , pp. 1439-1445
    • Malcolm, B.A.1
  • 22
    • 34547854325 scopus 로고    scopus 로고
    • Trypanosoma brucei Polo-like kinase is essential for basal body duplication, kDNA segregation and cytokinesis
    • Hammarton, T. C.; Kramer, S.; Tetley, L.; Boshart, M.; Mottram, J. C. Trypanosoma brucei Polo-like kinase is essential for basal body duplication, kDNA segregation and cytokinesis Mol. Microbiol. 2007, 65, 1229-1248
    • (2007) Mol. Microbiol. , vol.65 , pp. 1229-1248
    • Hammarton, T.C.1    Kramer, S.2    Tetley, L.3    Boshart, M.4    Mottram, J.C.5
  • 24
    • 47049088391 scopus 로고    scopus 로고
    • The synthesis of UDP-N-acetylglucosamine is essential for bloodstream form Trypanosoma brucei in vitro and in vivo and UDP-N-acetylglucosamine starvation reveals a hierarchy in parasite protein glycosylation
    • Stokes, M. J.; Guther, M. L. S.; Turnock, D. C.; Prescott, A. R.; Martin, K. L.; Alphey, M. S.; Ferguson, M. A. J. The synthesis of UDP-N- acetylglucosamine is essential for bloodstream form Trypanosoma brucei in vitro and in vivo and UDP-N-acetylglucosamine starvation reveals a hierarchy in parasite protein glycosylation J. Biol. Chem. 2008, 283, 16147-16161
    • (2008) J. Biol. Chem. , vol.283 , pp. 16147-16161
    • Stokes, M.J.1    Guther, M.L.S.2    Turnock, D.C.3    Prescott, A.R.4    Martin, K.L.5    Alphey, M.S.6    Ferguson, M.A.J.7
  • 26
    • 77952059998 scopus 로고    scopus 로고
    • Nuclear DBF-2-related kinases are essential regulators of cytokinesis in bloodstream stage Trypanosoma brucei
    • Ma, J. T.; Benz, C.; Grimaldi, R.; Stockdale, C.; Wyatt, P.; Frearson, J.; Hammarton, T. C. Nuclear DBF-2-related kinases are essential regulators of cytokinesis in bloodstream stage Trypanosoma brucei J. Biol. Chem. 2010, 285, 15356-15368
    • (2010) J. Biol. Chem. , vol.285 , pp. 15356-15368
    • Ma, J.T.1    Benz, C.2    Grimaldi, R.3    Stockdale, C.4    Wyatt, P.5    Frearson, J.6    Hammarton, T.C.7
  • 27
    • 79251611901 scopus 로고    scopus 로고
    • Structure of human O-GlcNAc transferase and its complex with a peptide substrate
    • Lazarus, M. B.; Nam, Y. S.; Jiang, J. Y.; Sliz, P.; Walker, S. Structure of human O-GlcNAc transferase and its complex with a peptide substrate Nature 2011, 469, 564-567
    • (2011) Nature , vol.469 , pp. 564-567
    • Lazarus, M.B.1    Nam, Y.S.2    Jiang, J.Y.3    Sliz, P.4    Walker, S.5
  • 30
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang, J. H.; Chung, T. D. Y.; Oldenburg, K. R. A simple statistical parameter for use in evaluation and validation of high throughput screening assays J. Biomol. Screen. 1999, 4, 67-73
    • (1999) J. Biomol. Screen. , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.Y.2    Oldenburg, K.R.3
  • 31
    • 33845491449 scopus 로고    scopus 로고
    • Interpreting steep dose-response curves in early inhibitor discovery
    • Shoichet, B. K. Interpreting steep dose-response curves in early inhibitor discovery J. Med. Chem. 2006, 49, 7274-7277
    • (2006) J. Med. Chem. , vol.49 , pp. 7274-7277
    • Shoichet, B.K.1
  • 32
    • 33646237094 scopus 로고    scopus 로고
    • Relationships between molecular complexity, biological activity, and structural diversity
    • Schuffenhauer, A.; Brown, N.; Selzer, P.; Ertl, P.; Jacoby, E. Relationships between molecular complexity, biological activity, and structural diversity J. Chem. Inf. Model. 2006, 46, 525-535
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 525-535
    • Schuffenhauer, A.1    Brown, N.2    Selzer, P.3    Ertl, P.4    Jacoby, E.5
  • 33
    • 71049126548 scopus 로고    scopus 로고
    • Escape from flatland: Increasing saturation as an approach to improving clinical success
    • Lovering, F.; Bikker, J.; Humblet, C. Escape from flatland: increasing saturation as an approach to improving clinical success J. Med. Chem. 2009, 52, 6752-6756
    • (2009) J. Med. Chem. , vol.52 , pp. 6752-6756
    • Lovering, F.1    Bikker, J.2    Humblet, C.3
  • 34
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • Hopkins, A. L.; Groom, C. R.; Alex, A. Ligand efficiency: a useful metric for lead selection Drug Discovery Today 2004, 9, 430-431
    • (2004) Drug Discovery Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 36
    • 79952202090 scopus 로고    scopus 로고
    • The design, annotation, and application of a kinase-targeted library
    • Xi, H. L.; Lunney, E. A. The design, annotation, and application of a kinase-targeted library Methods Mol. Biol. 2011, 685, 279-291
    • (2011) Methods Mol. Biol. , vol.685 , pp. 279-291
    • Xi, H.L.1    Lunney, E.A.2
  • 37
    • 70350495649 scopus 로고    scopus 로고
    • Enhanced HTS hit selection via a local hit rate analysis
    • Posner, B. A.; Xi, H. L.; Mills, J. E. J. Enhanced HTS hit selection via a local hit rate analysis J. Chem. Inf. Model. 2009, 49, 2202-2210
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2202-2210
    • Posner, B.A.1    Xi, H.L.2    Mills, J.E.J.3
  • 38
    • 80053471789 scopus 로고    scopus 로고
    • The influence of the 'organizational factor' on compound quality in drug discovery
    • Leeson, P. D.; St-Gallay, S. A. The influence of the 'organizational factor' on compound quality in drug discovery Nat. Rev. Drug Discovery 2011, 10, 749-765
    • (2011) Nat. Rev. Drug Discovery , vol.10 , pp. 749-765
    • Leeson, P.D.1    St-Gallay, S.A.2
  • 39
    • 78649254350 scopus 로고    scopus 로고
    • Accessing new chemical space for 'undruggable' targets
    • Dandapani, S.; Marcaurelle, L. A. Accessing new chemical space for 'undruggable' targets Nat. Chem. Biol. 2010, 6, 861-863
    • (2010) Nat. Chem. Biol. , vol.6 , pp. 861-863
    • Dandapani, S.1    Marcaurelle, L.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.