ALARM NMR: A rapid and robust experimental method to detect reactive false positives in biochemical screens

Journal of the American Chemical Society

Volumn 127, Issue 1, 2005, Pages 217-224

  Huth, Jeffrey R ^a   Mendoza, Renaldo ^a   Olejniczak, Edward T ^a   Johnson, Robert W ^a   Cothron, Darlene A ^a   Liu, Yaya ^a   Lerner, Claude G ^a   Chen, Jun ^a   Hajduk, Philip J ^a  

^a ABBOTT LABORATORIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COSTS; DATA ACQUISITION; FLUORESCENCE; NUCLEAR MAGNETIC RESONANCE; OPTIMIZATION; PROTEINS; THROUGHPUT;

DRUG LEADS; HIGH-THROUGHPUT SCREENING (HTS); SILICO PROGRAMS;

DRUG DOSAGE;

LA ANTIGEN; NEW DRUG; PROTEIN; THIOL;

ACCURACY; ALARM NURCLEAR MAGNETIC RESONANCE; ARTICLE; COMPARATIVE STUDY; COMPUTER MODEL; DRUG SCREENING; DRUG TARGETING; FILTRATION; FLUORESCENCE ANALYSIS; HIGH THROUGHPUT SCREENING; LABORATORY DIAGNOSIS; NUCLEAR MAGNETIC RESONANCE; OXIDATION;

AUTOANTIGENS; FALSE POSITIVE REACTIONS; GLUTATHIONE; HUMANS; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PHARMACEUTICAL PREPARATIONS; RIBONUCLEOPROTEINS; SENSITIVITY AND SPECIFICITY; SULFHYDRYL COMPOUNDS;

EID: 11844253252     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0455547     Document Type: Article

References (37)

1. Rishton, G. M. Drug Discov. Today 2003, 8, 86-96.
2. McGovern, S. L.; Caselli, E.; Grigorieff, N.; Shoichet, B. K. J. Med. Chem. 2002, 45, 1712-1722.
3. Hajduk, P. J.; Burns, D. J. Comb. Chem. High Throughput Screen. 2002, 5, 613-622.
4. Jahnke, W.; Widmer, H. Cell. Mol. Life Sci. 2004, 61, 580-599.
5. Rishton, G. M. Drug Discov. Today 1997, 2, 382-384.
6. Roche, O.; Schneider, P.; Zuegge, J.; Cuba, W.; Kansy, M.; Alanine, A.; Bleicher, K.; Danel, F.; Gutknecht, E. M.; Rogers-Evans, M.; Neidhart, W.; Stalder, H.; Dillon, M.; Sjogren, E.; Fotouhi, N.; Gillespie, P.; Goodnow, R.; Harris, W.; Jones, P.; Taniguchi, M.; Tsujii, S.; von der Saal, W.; Zimmermann, G.; Sehneider, G. J. Med. Chem. 2002, 45, 137-142.
7. Epps, D. E.; Taylor, B. M. Anal. Biochem. 2001, 295, 101-106.
8. Wilson, J. M.; Wu, D.; Motiu-DeGrood, R.; Hupe, D. J. J. Am. Chem. Soc. 1980, 102, 359-363.
9. Jacks, A.; Babon, J.; Kelly, G.; Manolaridis, I.; Cary, P. D.; Curry, S.; Conte, M. R, Structure 2003, 11, 833-843.
10. Hajduk, P. J.; Meadows, R. P.; Fesik, S. W. Science 1997, 278, 497-499.
11. Maraia, R. J.; Inline, R. V. Mol. Cell. Biol. 2001, 21, 367-379.
12. Ali, N.; Siddiqui, A. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 2249-2254.
13. Hajduk, P. J.; Mack, J. C.; Olejniczak, E. T.; Park, C.; Dandliker, P. J.; Beutel, B. A. J. Am. Chem. Soc. 2004, 126, 2390-2398.
14. Hewitt, W. L. J. Infect. Dis. 1973, 128, S312-319.
15. Nobel, C. I.; Kimland, M.; Lind, B.; Orrenius, S.; Slater, A. F. J. Biol. Chem. 1995, 270, 26202-26208.
16. Lambrecht, N.; Corbett, Z.; Bayle, D.; Karlish, S. J.; Sachs, G. J. Biol. Chem. 1998, 273, 13719-13728.
17. Hisaka, A.; Kasamatsu, S.; Takenaga, N.; Ohtawa, M. J. Chromatogr. 1989, 494, 183-189.
18. Tingey, D. P.; Schroeder, A.; Epstein, M. P.; Epstein, D. L. Arch. Ophthalmol. 1992, 110, 699-702.
19. de Vries, H.; Beijersbergen van Henegouwen, G. M. J. Photochem. Photobiol. B 1998, 43, 217-221.
20. Evans, D. C.; Watt, A. P.; Nicoll-Griffith, D. A.; Baillie, T. A. Chem. Res. Toxicol. 2004, 17, 3-16.
21. Hann, M.; Hudson, B.; Lewell, X.; Lifely, R.; Miller, L.; Ramsden, N. J. Chem. Inf. Comput. Sci. 1999, 39, 897-902.
22. Wang, J.; Ramnarayan, K. J. Comb. Chem. 1999, 1, 524-533.
23. Martin, E. J.; Critchlow, R. E. J. Comb. Chem. 1999, 1, 32-45.
24. Baurin, N.; Baker, R.; Richardson, C.; Chen, I.; Foloppe, N.; Potter, A.; Jordan, A.; Roughley, S.; Parratt, M.; Greaney, P.; Morley, D.; Hubbard, R. E. J. Chem. Inf. Comput. Sci. 2004, 44, 643-651.
25. Shih, T. W.; Lin, T, H.; Shealy, Y. F.; Hill, D. L. Drug Metab. Dispos. 1997, 25, 27-32.
26. Schonbrunn, E.; Eschenburg, S.; Krekel, F.; Luger, K.; Amrhein, N. Biochemistry 2000, 39, 2164-2173.
27. Huth, J. R.; Feng, W.; Ruddon, R. W. Biotechnol. Bioeng. 1994, 44, 66-72.
28. Walters, W. P.; Stahl, M. T.; Murcko, M. A. Drug Discov. Today 1998, 3, 160-178.
29. Lewell, X. Q.; Judd, D. B.; Watson, S. P.; Hann, M. M. J. Chem. Inf. Comput. Sci. 1998, 38, 511-522.
30. Metz, B.; Kersten, G. F.; Hoogerhout, P.; Brugghe, H. F.; Timmermans, H. A.; de Jong, A.; Meiring, H.; ten Hove, J.; Hennink, W. E.; Crommelin, D. J.; Jiskoot, W. J. Biol. Chem. 2004, 279, 6235-6243.
31. Harlan, J. E.; Egan, D. A.; Ladror, U. S.; Snyder, S.; Tang, M. I.; Buko, A.; Holzman, T. F. Assay Drug Dev. Technol. 2003, 1, 507-519.
32. Hajduk, P. J.; Augeri, D. J.; Mack, J.; Mendoza, R.; Yang, J. G.; Betz, S. F.; Fesik, S. W. J. Am. Chem. Soc. 2000, 122, 7898-7904.
33. Hajduk, P. J.; Meadows, R. P.; Fesik, S. W. Q. Rev. Biophys. 1999, 32, 211-240.
34. Guertin, K. R.; Setti, L.; Qi, L.; Dunsdon, R. M.; Dymock, B. W.; Jones, P. S.; Overton, H.; Taylor, M.; Williams, G.; Sergi, J. A.; Wang, K.; Peng, Y.; Renzetti, M.; Boyce, R.; Falcioni, F.; Garippa, R.; Olivier, A. R. Bioorg. Med. Chem. Lett. 2003, 13, 2895-2898.
35. Tjernberg, A.; Hallen, D.; Schultz, J.; James, S.; Benkestock, K.; Bystrom. S.; Weigelt, J. Bioorg. Med. Chem. Lett. 2004, 14, 891-895.
36. Wang, Q.; Dube, D.; Friesen, R. W.; LeRiche, T. G.; Bateman, K. P.; Trimble, L.; Sanghara, J.; Pollex, R.; Ramachandran, C.; Gresser, M. J.; Huang, Z. Biochemistry 2004, 43, 4294-4303.
37. Elia, A. E.; Rellos, P.; Haire, L. F.; Chao, J. W.; Ivins, F. J.; Hoepker, K.; Mohammad, D.; Cantley, L. C.; Smerdon, S. J.; Yaffe, M. B. Cell 2003, 115, 83-95.