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Volumn 46, Issue 2, 2006, Pages 525-535

Relationships between molecular complexity, biological activity, and structural diversity

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CONFORMAL MAPPING; ENZYMES; MOLECULAR STRUCTURE; PATTERN RECOGNITION; SET THEORY;

EID: 33646237094     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci0503558     Document Type: Conference Paper
Times cited : (79)

References (44)
  • 2
    • 0037068532 scopus 로고    scopus 로고
    • Do structurally similar molecules have similar biological activity?
    • Martin Y. C.; Kofron, J. L.; Traphagen L. M. Do structurally similar molecules have similar biological activity? J. Med. Chem. 2002, 45, 4350-4358.
    • (2002) J. Med. Chem. , vol.45 , pp. 4350-4358
    • Martin, Y.C.1    Kofron, J.L.2    Traphagen, L.M.3
  • 3
    • 19944370732 scopus 로고    scopus 로고
    • The contribution of molecular informatics to chemogenomics. Knowledge-based discovery of biological targets and chemical lead compounds
    • Chemogenomics in drug discovery
    • Jacoby, E.; Schuffenhauer, A.; Acklin, P. The contribution of molecular informatics to chemogenomics. Knowledge-based discovery of biological targets and chemical lead compounds. Methods and Principles in Medicinal Chemistry; 2004; Vol. 22 (Chemogenomics in drug discovery), pp 139-166.
    • (2004) Methods and Principles in Medicinal Chemistry , vol.22 , pp. 139-166
    • Jacoby, E.1    Schuffenhauer, A.2    Acklin, P.3
  • 4
    • 0041488802 scopus 로고    scopus 로고
    • Pharmacophore discovery-lessons learned
    • Van Drie, J. H. Pharmacophore discovery-lessons learned. Curr. Pharm. Des. 2003, 9, 1649-1664.
    • (2003) Curr. Pharm. Des. , vol.9 , pp. 1649-1664
    • Van Drie, J.H.1
  • 5
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • Kitchen, D. B.: Decornez, H.; Furr, J. R.; Bajorath, J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat. Rev. Drug Discovery 2004, 3, 935-949.
    • (2004) Nat. Rev. Drug Discovery , vol.3 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 6
    • 84956737652 scopus 로고    scopus 로고
    • De novo molecular design
    • Evolutionary Algorithms in Molecular Design
    • Gillet, V. J. De novo molecular design. Methods and Principles in Medicinal Chemistry; 2000; Vol. 8 (Evolutionary Algorithms in Molecular Design), pp 49-69.
    • (2000) Methods and Principles in Medicinal Chemistry , vol.8 , pp. 49-69
    • Gillet, V.J.1
  • 7
    • 23844449940 scopus 로고    scopus 로고
    • Computer-based de novo design of druglike molecules
    • Schneider, G.; Fechner, U. Computer-based de novo design of druglike molecules. Nat. Rev. Drug Discovery 2005, 4, 649-63.
    • (2005) Nat. Rev. Drug Discovery , vol.4 , pp. 649-663
    • Schneider, G.1    Fechner, U.2
  • 8
    • 0030039619 scopus 로고    scopus 로고
    • The art and practice of structure based drug design: A molecular modeling perspective
    • Bohacek, R. S.; McMartin, C.; Guida, W. C. The art and practice of structure based drug design: a molecular modeling perspective. Med. Res. Rev. 1996, 16, 3-50.
    • (1996) Med. Res. Rev. , vol.16 , pp. 3-50
    • Bohacek, R.S.1    McMartin, C.2    Guida, W.C.3
  • 9
    • 0034444471 scopus 로고    scopus 로고
    • Comments on the design of chemical libraries for screening
    • Villar, H. O.; Koehler R. T. Comments on the design of chemical libraries for screening. Mol. Divers. 2000, 5, 13-24.
    • (2000) Mol. Divers. , vol.5 , pp. 13-24
    • Villar, H.O.1    Koehler, R.T.2
  • 10
    • 9344242435 scopus 로고    scopus 로고
    • Molecular diversity management strategies for building and enhancement of diverse and focused lead discovery compound screening collections
    • Schuffenhauer, A.; Popov, M.; Schopfer, U.; Acklin, P.; Stanek, J.; Jacoby, E. Molecular diversity management strategies for building and enhancement of diverse and focused lead discovery compound screening collections. Comb. Chem. High Throughput Screening 2004, 7, 771-781.
    • (2004) Comb. Chem. High Throughput Screening , vol.7 , pp. 771-781
    • Schuffenhauer, A.1    Popov, M.2    Schopfer, U.3    Acklin, P.4    Stanek, J.5    Jacoby, E.6
  • 11
    • 0034355922 scopus 로고    scopus 로고
    • Computer-aided molecular diversity analysis and combinatorial library design
    • Lewis, R. A.; Pickett, S. D.; Clark, D. E. Computer-aided molecular diversity analysis and combinatorial library design. Rev. Comput. Chem. 2000, 16, 1-51.
    • (2000) Rev. Comput. Chem. , vol.16 , pp. 1-51
    • Lewis, R.A.1    Pickett, S.D.2    Clark, D.E.3
  • 12
    • 0035349270 scopus 로고    scopus 로고
    • Diverse viewpoints on computational aspects of molecular diversity
    • Martin, Y. C. Diverse viewpoints on computational aspects of molecular diversity. J. Comb. Chem. 2001, 3, 231-250.
    • (2001) J. Comb. Chem. , vol.3 , pp. 231-250
    • Martin, Y.C.1
  • 13
    • 14644431061 scopus 로고    scopus 로고
    • Managing molecular diversity
    • Perez J. J. Managing molecular diversity. Chem. Soc. Rev. 2005, 34. 143-152.
    • (2005) Chem. Soc. Rev. , vol.34 , pp. 143-152
    • Perez, J.J.1
  • 14
    • 0035324944 scopus 로고    scopus 로고
    • Molecular complexity and its impact on the probability of finding leads for drug discovery
    • Hann, M. M.; Leach, A. R.; Harper, G. Molecular complexity and its impact on the probability of finding leads for drug discovery. J. Chem. Inf. Comput. Sci. 2001, 41, 856-864.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 856-864
    • Hann, M.M.1    Leach, A.R.2    Harper, G.3
  • 15
    • 2942564021 scopus 로고    scopus 로고
    • Pursuing the leadlikeness concept in pharmaceutical research
    • Hann, M. M.; Oprea, T. I. Pursuing the leadlikeness concept in pharmaceutical research. Curr. Opin. Chem. Biol. 2004, 8, 225-263.
    • (2004) Curr. Opin. Chem. Biol. , vol.8 , pp. 225-263
    • Hann, M.M.1    Oprea, T.I.2
  • 16
    • 84971487341 scopus 로고    scopus 로고
    • Computational chemistry, molecular complexity and screening set design
    • Chemoinformatics in Drug Discovery
    • Hann, M. M.: Leach, A. R.; Green, D. V. S. Computational chemistry, molecular complexity and screening set design. Methods and Principles in Medicinal Chemistry; 2005; Vol. 23 (Chemoinformatics in Drug Discovery), pp 43-57.
    • (2005) Methods and Principles in Medicinal Chemistry , vol.23 , pp. 43-57
    • Hann, M.M.1    Leach, A.R.2    Green, D.V.S.3
  • 17
    • 84890641969 scopus 로고    scopus 로고
    • Chemoinformatic tools for library design and the hit-to-lead process: A user's perspective
    • Chemoinformatics in Drug Discovery
    • Goodnow, R. A., Jr.; Gillespie, P.; Bleicher, K. Chemoinformatic tools for library design and the hit-to-lead process: a user's perspective. Methods and Principles in Medicinal Chemistry, 2005; Vol. 23 (Chemoinformatics in Drug Discovery), pp 381-435.
    • (2005) Methods and Principles in Medicinal Chemistry , vol.23 , pp. 381-435
    • Goodnow Jr., R.A.1    Gillespie, P.2    Bleicher, K.3
  • 19
    • 0001232509 scopus 로고    scopus 로고
    • On the properties of bit string-based measures of chemical similarity
    • Flower, D. R. On the Properties of Bit String-Based Measures of Chemical Similarity. J. Chem. Inf. Comput. Sci. 1998, 38, 379-386.
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 379-386
    • Flower, D.R.1
  • 20
    • 0037835585 scopus 로고    scopus 로고
    • Analysis and display of the size dependence of chemical similarity coefficients
    • Holliday, J. D.; Salim, N.; Whittle, M.; Willett, P. Analysis and Display of the Size Dependence of Chemical Similarity Coefficients. J. Chem. Inf. Comput. Sci. 2003, 43, 819-828.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 819-828
    • Holliday, J.D.1    Salim, N.2    Whittle, M.3    Willett, P.4
  • 21
    • 0000684663 scopus 로고    scopus 로고
    • OptiSim: An extended dissimilarity selection method for finding diverse representative subsets
    • Clark, R. D. OptiSim: An extended dissimilarity selection method for finding diverse representative subsets. J. Chem. Inf. Comput. Sci. 1997, 37, 1181-1188.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 1181-1188
    • Clark, R.D.1
  • 22
    • 33646245689 scopus 로고    scopus 로고
    • Tripos, Inc. is at http://www.tripos.com.
  • 23
    • 33646245460 scopus 로고    scopus 로고
    • Pipeline Pilot is a product of SciTegic, Inc. is at http://www.scitegic-. com.
  • 24
    • 10244222365 scopus 로고    scopus 로고
    • Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures
    • Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures. Org. Biomol. Chem. 2004, 2, 3256-3266.
    • (2004) Org. Biomol. Chem. , vol.2 , pp. 3256-3266
    • Hert, J.1    Willett, P.2    Wilton, D.J.3    Acklin, P.4    Azzaoui, K.5    Jacoby, E.6    Schuffenhauer, A.7
  • 27
    • 33646250463 scopus 로고    scopus 로고
    • BCI (Barnard Chemical Information Ltd.) is at http://www.bci.gb.com.
  • 28
    • 26944499418 scopus 로고    scopus 로고
    • Rapid evaluation of synthetic and molecular complexity for in silico chemistry
    • in press, doi 10.1021/ci0501387
    • Allu, T. K.; Oprea, T. I. Rapid Evaluation of Synthetic and Molecular Complexity for in Silico Chemistry. J. Chem. Inf. Model 2005, in press, doi 10.1021/ci0501387.
    • (2005) J. Chem. Inf. Model
    • Allu, T.K.1    Oprea, T.I.2
  • 29
    • 0042700257 scopus 로고    scopus 로고
    • Development of a method for evaluating drug-likeness and ease of synthesis using a data set in which compounds are assigned scores based on chemists' intuition
    • Takaoka, Y.; Endo, Y.; Yamanobe, S.; Kakinuma, H.; Okubo, T.; Shimazaki, Y.; Ota, T.; Sumiya, S.; Yoshikawa, K. Development of a method for evaluating drug-likeness and ease of synthesis using a data set in which compounds are assigned scores based on chemists' intuition. J. Chem. Inf. Comput. Sci. 2003, 43, 1269-1275.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 1269-1275
    • Takaoka, Y.1    Endo, Y.2    Yamanobe, S.3    Kakinuma, H.4    Okubo, T.5    Shimazaki, Y.6    Ota, T.7    Sumiya, S.8    Yoshikawa, K.9
  • 30
  • 32
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • Hopkins, A. L.; Groom, C. R. Ligand efficiency: a useful metric for lead selection. Drug Discovery Today 2004, 9, 430-431.
    • (2004) Drug Discovery Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2
  • 33
    • 0001219854 scopus 로고    scopus 로고
    • Deriving the 3D structure of organic molecules from their infrared spectra
    • Hemmer, M. C.; Steinhauer, V.; Gasteiger, J. Deriving the 3D structure of organic molecules from their infrared spectra. Vib. Spectrosc. 1999, 19, 151-164.
    • (1999) Vib. Spectrosc. , vol.19 , pp. 151-164
    • Hemmer, M.C.1    Steinhauer, V.2    Gasteiger, J.3
  • 34
    • 31444452744 scopus 로고
    • Automatic generation of 3D- atomic coordinates for organic molecules
    • Gasteiger, J.; Rudolph, C.; Sadowski, J. Automatic Generation of 3D- Atomic Coordinates for Organic Molecules. Tetrahedron Comput. Method. 1990, 3, 537-547.
    • (1990) Tetrahedron Comput. Method. , vol.3 , pp. 537-547
    • Gasteiger, J.1    Rudolph, C.2    Sadowski, J.3
  • 37
    • 0037361981 scopus 로고    scopus 로고
    • Prediction of aqueous solubility of organic compounds based on a 3D structure representation
    • Yan, A.; Gasteiger, J. Prediction of Aqueous Solubility of Organic Compounds Based on a 3D Structure Representation. J. Chem. Inf. Comput. Sci. 2003, 43, 429-434.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 429-434
    • Yan, A.1    Gasteiger, J.2
  • 38
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • Bemis, G. W.; Murcko, M. A. The Properties of known drugs. 1. Molecular frameworks. J. Med. Chem. 1996, 39, 2887-2893.
    • (1996) J. Med. Chem. , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 44
    • 4544350863 scopus 로고    scopus 로고
    • Enrichment of extremely noisy high-throughput screening data using a naïve bayes classifier
    • Glick, M.; Klon, A. E.; Acklin, P.; Davies, J. W. Enrichment of Extremely Noisy High-Throughput Screening Data Using a Naïve Bayes Classifier. J. Biomol. Screen. 2004, 9, 32-36.
    • (2004) J. Biomol. Screen. , vol.9 , pp. 32-36
    • Glick, M.1    Klon, A.E.2    Acklin, P.3    Davies, J.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.