-
1
-
-
34247583996
-
Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins
-
Hart, G. W.; Housley, M. P.; Slawson, C. Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins Nature 2007, 446, 1017-1022
-
(2007)
Nature
, vol.446
, pp. 1017-1022
-
-
Hart, G.W.1
Housley, M.P.2
Slawson, C.3
-
2
-
-
0035937586
-
Glycosylation of nucleocytoplasmic proteins: Signal transduction and O-GlcNAc
-
Wells, L.; Vosseller, K.; Hart, G. W. Glycosylation of nucleocytoplasmic proteins: Signal transduction and O-GlcNAc Science 2001, 291, 2376-2378
-
(2001)
Science
, vol.291
, pp. 2376-2378
-
-
Wells, L.1
Vosseller, K.2
Hart, G.W.3
-
3
-
-
35348866703
-
O-GlcNAc modification in diabetes and Alzheimer's disease
-
Dias, W. B.; Hart, G. W. O-GlcNAc modification in diabetes and Alzheimer's disease Mol. Biosyst. 2007, 3, 766-772
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 766-772
-
-
Dias, W.B.1
Hart, G.W.2
-
4
-
-
0034854157
-
Glycan-dependent signaling: O-linked N-acetylglucosamine
-
Hanover, J. A. Glycan-dependent signaling: O-linked N-acetylglucosamine Faseb J. 2001, 15, 1865-1876
-
(2001)
Faseb J.
, vol.15
, pp. 1865-1876
-
-
Hanover, J.A.1
-
5
-
-
10544236116
-
The microtubule-associated protein tau is extensively modified with O-linked N-acetylglucosamine
-
Arnold, C. S.; Johnson, G. V. W.; Cole, R. N.; Dong, D. L. Y.; Lee, M.; Hart, G. W. The microtubule-associated protein tau is extensively modified with O-linked N-acetylglucosamine J. Biol. Chem. 1996, 271, 28741-28744
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 28741-28744
-
-
Arnold, C.S.1
Johnson, G.V.W.2
Cole, R.N.3
Dong, D.L.Y.4
Lee, M.5
Hart, G.W.6
-
6
-
-
0037117511
-
Elevated nucleocytoplasmic glycosylation by O-GlcNAc results in insulin resistance associated with defects in Akt activation in 3T3-L1 adipocytes
-
Vosseller, K.; Wells, L.; Lane, M. D.; Hart, G. W. Elevated nucleocytoplasmic glycosylation by O-GlcNAc results in insulin resistance associated with defects in Akt activation in 3T3-L1 adipocytes Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5313-5318
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5313-5318
-
-
Vosseller, K.1
Wells, L.2
Lane, M.D.3
Hart, G.W.4
-
7
-
-
0036679303
-
Altered glycan-dependent signaling induces insulin resistance and hyperleptinemia
-
McClain, D. A.; Lubas, W. A.; Cooksey, R. C.; Hazel, M.; Parker, G. J.; Love, D. C.; Hanover, J. A. Altered glycan-dependent signaling induces insulin resistance and hyperleptinemia Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10695-10699
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 10695-10699
-
-
McClain, D.A.1
Lubas, W.A.2
Cooksey, R.C.3
Hazel, M.4
Parker, G.J.5
Love, D.C.6
Hanover, J.A.7
-
8
-
-
41149165746
-
Cardioprotection by N-acetylglucosamine linkage to cellular proteins
-
Jones, S. P.; Zachara, N. E.; Ngoh, G. A.; Hill, B. G.; Teshima, Y.; Bhatnagar, A.; Hart, G. W.; Marban, E. Cardioprotection by N-acetylglucosamine linkage to cellular proteins Circulation 2008, 117, 1172-1182
-
(2008)
Circulation
, vol.117
, pp. 1172-1182
-
-
Jones, S.P.1
Zachara, N.E.2
Ngoh, G.A.3
Hill, B.G.4
Teshima, Y.5
Bhatnagar, A.6
Hart, G.W.7
Marban, E.8
-
9
-
-
59649097969
-
O-linked beta-N-acetylglucosamine: A new piece of the cardioprotection puzzle?
-
Downey, J. M.; Cohen, M. V. O-linked beta-N-acetylglucosamine: A new piece of the cardioprotection puzzle? Circ. Res. 2009, 104, 7-8
-
(2009)
Circ. Res.
, vol.104
, pp. 7-8
-
-
Downey, J.M.1
Cohen, M.V.2
-
10
-
-
0029120744
-
O-linked n-acetylglucosamine is up-regulated in alzheimer brains
-
Griffith, L. S.; Schmitz, B. O-linked n-acetylglucosamine is up-regulated in alzheimer brains Biochem. Biophys. Res. Commun. 1995, 213, 424-431
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.213
, pp. 424-431
-
-
Griffith, L.S.1
Schmitz, B.2
-
11
-
-
0032053969
-
Reduction of O-linked N-acetylglucosamine-modified assembly protein-3 in Alzheimer's disease
-
Yao, P. J.; Coleman, P. D. Reduction of O-linked N-acetylglucosamine- modified assembly protein-3 in Alzheimer's disease J. Neurosci. 1998, 18, 2399-2411
-
(1998)
J. Neurosci.
, vol.18
, pp. 2399-2411
-
-
Yao, P.J.1
Coleman, P.D.2
-
12
-
-
3242739968
-
O-GlcNAcylation regulates phosphorylation of tau: A mechanism involved in Alzheimer's disease
-
Liu, F.; Iqbal, K.; Grundke-Iqbal, I.; Hart, G. W.; Gong, C. X. O-GlcNAcylation regulates phosphorylation of tau: A mechanism involved in Alzheimer's disease Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10804-10809
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 10804-10809
-
-
Liu, F.1
Iqbal, K.2
Grundke-Iqbal, I.3
Hart, G.W.4
Gong, C.X.5
-
13
-
-
79954430630
-
Human Alzheimer's disease synaptic O-GlcNAc site mapping and iTRAQ expression proteomics with ion trap mass spectrometry
-
Skorobogatko, Y. V.; Deuso, J.; Adolf-Bryfogle, J.; Nowak, M. G.; Gong, Y.; Lippa, C. F.; Vosseller, K. Human Alzheimer's disease synaptic O-GlcNAc site mapping and iTRAQ expression proteomics with ion trap mass spectrometry Amino acids 2011, 40, 765-779
-
(2011)
Amino Acids
, vol.40
, pp. 765-779
-
-
Skorobogatko, Y.V.1
Deuso, J.2
Adolf-Bryfogle, J.3
Nowak, M.G.4
Gong, Y.5
Lippa, C.F.6
Vosseller, K.7
-
14
-
-
84858664547
-
Increasing O-GlcNAc slows neurodegeneration and stabilizes tau against aggregation
-
Yuzwa, S. A.; Shan, X.; Macauley, M. S.; Clark, T.; Skorobogatko, Y.; Vosseller, K.; Vocadlo, D. J. Increasing O-GlcNAc slows neurodegeneration and stabilizes tau against aggregation Nat. Chem. Biol. 2012, 8, 393-399
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 393-399
-
-
Yuzwa, S.A.1
Shan, X.2
MacAuley, M.S.3
Clark, T.4
Skorobogatko, Y.5
Vosseller, K.6
Vocadlo, D.J.7
-
15
-
-
0032580809
-
Prediction of the coding sequences of unidentified human genes. X. the complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro
-
Ishikawa, K.; Nagase, T.; Suyama, M.; Miyajima, N.; Tanaka, A.; Kotani, H.; Nomura, N.; Ohara, O. Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro DNA Res. 1998, 5, 169-176
-
(1998)
DNA Res.
, vol.5
, pp. 169-176
-
-
Ishikawa, K.1
Nagase, T.2
Suyama, M.3
Miyajima, N.4
Tanaka, A.5
Kotani, H.6
Nomura, N.7
Ohara, O.8
-
16
-
-
33645735070
-
Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis
-
Rao, F. V.; Dorfmueller, H. C.; Villa, F.; Allwood, M.; Eggleston, I. M.; van Aalten, D. M. F. Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis Embo J. 2006, 25, 1569-1578
-
(2006)
Embo J.
, vol.25
, pp. 1569-1578
-
-
Rao, F.V.1
Dorfmueller, H.C.2
Villa, F.3
Allwood, M.4
Eggleston, I.M.5
Van Aalten, D.M.F.6
-
17
-
-
0035971182
-
Dynamic O-glycosylation of nuclear and cytosolic proteins - Cloning and characterization of a neutral, cytosolic beta-N-acetylglucosaminidase from human brain
-
Gao, Y.; Wells, L.; Comer, F. I.; Parker, G. J.; Hart, G. W. Dynamic O-glycosylation of nuclear and cytosolic proteins-Cloning and characterization of a neutral, cytosolic beta-N-acetylglucosaminidase from human brain J. Biol. Chem. 2001, 276, 9838-9845
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 9838-9845
-
-
Gao, Y.1
Wells, L.2
Comer, F.I.3
Parker, G.J.4
Hart, G.W.5
-
18
-
-
33645226771
-
Identification of Asp(174) and Asp(175) as the key catalytic residues of human O-GlcNAcase by functional analysis of site-directed mutants
-
Cetinbas, N.; Macauley, M. S.; Stubbs, K. A.; Drapala, R.; Vocadlo, D. J. Identification of Asp(174) and Asp(175) as the key catalytic residues of human O-GlcNAcase by functional analysis of site-directed mutants Biochemistry 2006, 45, 3835-3844
-
(2006)
Biochemistry
, vol.45
, pp. 3835-3844
-
-
Cetinbas, N.1
MacAuley, M.S.2
Stubbs, K.A.3
Drapala, R.4
Vocadlo, D.J.5
-
19
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M. A.; Stuart, A. C.; Fiser, A.; Sanchez, R.; Melo, F.; Sali, A. Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 2000, 29, 291-325
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
20
-
-
0003653901
-
-
3rd ed. Kukol, A. Wiley-VCH: Weinhein, Germany
-
Höltje, H. D.; Sippl, W.; Rognan, D.; Folkers, G. Molecular Modeling: Basic Principles and Applications, 3rd ed.; Kukol, A., Ed.; Wiley-VCH: Weinhein, Germany, 2008; pp 365-382.
-
(2008)
Molecular Modeling: Basic Principles and Applications
, pp. 365-382
-
-
Höltje, H.D.1
Sippl, W.2
Rognan, D.3
Folkers, G.4
-
21
-
-
33745049963
-
Structure and mechanism of a bacterial beta-glucosaminidase having O-GlcNAcase activity
-
Dennis, R. J.; Taylor, E. J.; Macauley, M. S.; Stubbs, K. A.; Turkenburg, J. P.; Hart, S. J.; Black, G. N.; Vocadlo, D. J.; Davies, G. J. Structure and mechanism of a bacterial beta-glucosaminidase having O-GlcNAcase activity Nat. Struct. Mol. Biol. 2006, 13, 365-371
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 365-371
-
-
Dennis, R.J.1
Taylor, E.J.2
MacAuley, M.S.3
Stubbs, K.A.4
Turkenburg, J.P.5
Hart, S.J.6
Black, G.N.7
Vocadlo, D.J.8
Davies, G.J.9
-
22
-
-
21844464281
-
O-GlcNAcase uses substrate-assisted catalysis: Kinetic analysis and development of highly selective mechanism-inspired inhibitors
-
Macauley, M. S.; Whitworth, G. E.; Debowski, A. W.; Chin, D.; Vocadlo, D. J. O-GlcNAcase uses substrate-assisted catalysis: Kinetic analysis and development of highly selective mechanism-inspired inhibitors J. Biol. Chem. 2005, 280, 25313-25322
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25313-25322
-
-
MacAuley, M.S.1
Whitworth, G.E.2
Debowski, A.W.3
Chin, D.4
Vocadlo, D.J.5
-
23
-
-
33646581015
-
Akt1 is dynamically modified with O-GlcNAc following treatments with PUGNAc and insulin-like growth factor-1
-
Gandy, J. C.; Rountree, A. E.; Bijur, G. N. Akt1 is dynamically modified with O-GlcNAc following treatments with PUGNAc and insulin-like growth factor-1 FEBS Lett. 2006, 580, 3051-3058
-
(2006)
FEBS Lett.
, vol.580
, pp. 3051-3058
-
-
Gandy, J.C.1
Rountree, A.E.2
Bijur, G.N.3
-
24
-
-
78349253110
-
Inhibition of O-GlcNAcase in perfused rat hearts by NAG-thiazolines at the time of reperfusion is cardioprotective in an O-GlcNAc-dependent manner
-
Laczy, B.; Marsh, S. A.; Brocks, C. A.; Wittmann, I.; Chatham, J. C. Inhibition of O-GlcNAcase in perfused rat hearts by NAG-thiazolines at the time of reperfusion is cardioprotective in an O-GlcNAc-dependent manner Am. J. Physiol. Heart. Circ. Physiol. 2010, 299, 1715-1727
-
(2010)
Am. J. Physiol. Heart. Circ. Physiol.
, vol.299
, pp. 1715-1727
-
-
Laczy, B.1
Marsh, S.A.2
Brocks, C.A.3
Wittmann, I.4
Chatham, J.C.5
-
25
-
-
33747410858
-
A e b-glucosidases como alvos moleculares para desenvolvimento de fármacos
-
Melo, E. B. d.; Carvalho, I. a e b-glucosidases como alvos moleculares para desenvolvimento de fármacos Química Nova 2006, 29, 840-843
-
(2006)
Química Nova
, vol.29
, pp. 840-843
-
-
Carvalho, I.1
-
26
-
-
33846412613
-
Analysis of PUGNAc and NAG-thiazoline as transition state analogues for human O-GlcNAcase: Mechanistic and structural insights into inhibitor selectivity and transition state poise
-
Whitworth, G. E.; Macauley, M. S.; Stubbs, K. A.; Dennis, R. J.; Taylor, E. J.; Davies, G. J.; Greig, I. R.; Vocadlo, D. J. Analysis of PUGNAc and NAG-thiazoline as transition state analogues for human O-GlcNAcase: Mechanistic and structural insights into inhibitor selectivity and transition state poise J. Am. Chem. Soc. 2007, 129, 635-644
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 635-644
-
-
Whitworth, G.E.1
MacAuley, M.S.2
Stubbs, K.A.3
Dennis, R.J.4
Taylor, E.J.5
Davies, G.J.6
Greig, I.R.7
Vocadlo, D.J.8
-
27
-
-
47649114560
-
A potent mechanism-inspired O-GlcNAcase inhibitor that blocks phosphorylation of tau in vivo
-
Yuzwa, S. A.; Macauley, M. S.; Heinonen, J. E.; Shan, X.; Dennis, R. J.; He, Y.; Whitworth, G. E.; Stubbs, K. A.; McEachern, E. J.; Davies, G. J.; Vocadlo, D. J. A potent mechanism-inspired O-GlcNAcase inhibitor that blocks phosphorylation of tau in vivo Nat. chem. biol. 2008, 4, 483-490
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 483-490
-
-
Yuzwa, S.A.1
MacAuley, M.S.2
Heinonen, J.E.3
Shan, X.4
Dennis, R.J.5
He, Y.6
Whitworth, G.E.7
Stubbs, K.A.8
McEachern, E.J.9
Davies, G.J.10
Vocadlo, D.J.11
-
28
-
-
77949305110
-
Increasing O-GlcNAc levels: An overview of small-molecule inhibitors of O-GlcNAcase
-
Macauley, M. S.; Vocadlo, D. J. Increasing O-GlcNAc levels: An overview of small-molecule inhibitors of O-GlcNAcase Biochim. Biophys. Acta 2010, 1800, 107-121
-
(2010)
Biochim. Biophys. Acta
, vol.1800
, pp. 107-121
-
-
MacAuley, M.S.1
Vocadlo, D.J.2
-
29
-
-
79958081045
-
Enzyme molecular mechanism as a starting point to design new inhibitors: A theoretical study of O-GlcNAcase
-
Lameira, J. n.; Alves, C. u. N.; Tuñón, I. a.; Martí, S.; Moliner, V. Enzyme molecular mechanism as a starting point to design new inhibitors: A theoretical study of O-GlcNAcase J. Phys. Chem. B 2011, 115, 6764-6775
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 6764-6775
-
-
Alves U. C, N.1
Martí, S.2
Moliner, V.3
-
30
-
-
57049144808
-
A Quantum mechanics/molecular mechanics study of the protein-ligand interaction of two potent inhibitors of human O-GlcNAcase: PUGNAc and NAG-thiazoline
-
Lameira, J.; Alves, C. N.; Moliner, V.; Marti, S.; Kanaan, N.; Tunon, I. A Quantum mechanics/molecular mechanics study of the protein-ligand interaction of two potent inhibitors of human O-GlcNAcase: PUGNAc and NAG-thiazoline J. Phys. Chem. B 2008, 112, 14260-14266
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 14260-14266
-
-
Lameira, J.1
Alves, C.N.2
Moliner, V.3
Marti, S.4
Kanaan, N.5
Tunon, I.6
-
31
-
-
77952707954
-
Quantum mechanical/molecular mechanical molecular dynamics simulation of wild-type and seven mutants of CpNagJ in complex with PUGNAc
-
Lameira, J.; Alves, C. N.; Moliner, V.; Marti, S.; Castillo, R.; Tunon, I. Quantum mechanical/molecular mechanical molecular dynamics simulation of wild-type and seven mutants of CpNagJ in complex with PUGNAc J. Phys. Chem. B 2010, 114, 7029-7036
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7029-7036
-
-
Lameira, J.1
Alves, C.N.2
Moliner, V.3
Marti, S.4
Castillo, R.5
Tunon, I.6
-
32
-
-
0017100947
-
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of carbonium-ion in reaction of lysozyme
-
Warshel, A.; Levitt, M. Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of carbonium-ion in reaction of lysozyme J. Mol. Biol. 1976, 103, 227-249
-
(1976)
J. Mol. Biol.
, vol.103
, pp. 227-249
-
-
Warshel, A.1
Levitt, M.2
-
33
-
-
77955169965
-
Homology modeling and molecular dynamics simulation of an alpha methyl coenzyme M reductase from methanogenic archea
-
Silva, J. R. A.; Lameira, J.; Santana, P. P. B.; Silva, A.; Schneider, M. P. C.; Alves, C. N. Homology modeling and molecular dynamics simulation of an alpha methyl coenzyme M reductase from methanogenic archea Int. J. Quantum Chem. 2010, 110, 2067-2075
-
(2010)
Int. J. Quantum Chem.
, vol.110
, pp. 2067-2075
-
-
Silva, J.R.A.1
Lameira, J.2
Santana, P.P.B.3
Silva, A.4
Schneider, M.P.C.5
Alves, C.N.6
-
34
-
-
84862126941
-
Molecular modeling of T. rangeli, T. brucei gambiense, and T. evansi sialidases in complex with the DANA inhibitor
-
Lima, A. H.; Souza, P. R. M.; Alencar, N.; Lameira, J.; Govender, T.; Kruger, H. G.; Maguire, G. E. M.; Alves, C. N. Molecular modeling of T. rangeli, T. brucei gambiense, and T. evansi sialidases in complex with the DANA inhibitor Chem. Biol. Drug Des. 2012, 80, 114-120
-
(2012)
Chem. Biol. Drug Des.
, vol.80
, pp. 114-120
-
-
Lima, A.H.1
Souza, P.R.M.2
Alencar, N.3
Lameira, J.4
Govender, T.5
Kruger, H.G.6
Maguire, G.E.M.7
Alves, C.N.8
-
35
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K.; Bordoli, L.; Kopp, J.; Schwede, T. The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling Bioinformatics 2006, 22, 195-201
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
36
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede, T.; Kopp, J.; Guex, N.; Peitsch, M. C. SWISS-MODEL: An automated protein homology-modeling server Nucleic Acids Res. 2003, 31, 3381-3385
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
37
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A.; Blundell, T. L. Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 1993, 234, 779-815
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
38
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A.; Do, R. K.; Sali, A. Modeling of loops in protein structures Protein Sci. 2000, 9, 1753-1773
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
39
-
-
3242886389
-
MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis, I. W.; Murray, L. W.; Richardson, J. S.; Richardson, D. C. MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes Nucleic Acids Res. 2004, 32, 615-619
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 615-619
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
40
-
-
34547566446
-
ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins
-
Wiederstein, M.; Sippl, M. J. ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins Nucleic Acids Res. 2007, 35, 407-410
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 407-410
-
-
Wiederstein, M.1
Sippl, M.J.2
-
41
-
-
0032540222
-
Assessing protein structures with a non-local atomic interaction energy
-
Melo, F.; Feytmans, E. Assessing protein structures with a non-local atomic interaction energy J. Mol. Biol. 1998, 277, 1141-1152
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1141-1152
-
-
Melo, F.1
Feytmans, E.2
-
42
-
-
40549141792
-
QMEAN: A comprehensive scoring function for model quality assessment
-
Benkert, P.; Tosatto, S. C. E.; Schomburg, D. QMEAN: A comprehensive scoring function for model quality assessment Proteins 2008, 71, 261-277
-
(2008)
Proteins
, vol.71
, pp. 261-277
-
-
Benkert, P.1
Tosatto, S.C.E.2
Schomburg, D.3
-
43
-
-
84934439520
-
Methods in Molecular Docking
-
In; Kukol, A. Humana Press: Totowa, NJ
-
Morris, G. M.; Lim-Wilby, M. Methods in Molecular Docking. In Molecular Modeling of Proteins; Kukol, A., Ed.; Humana Press: Totowa, NJ, 2008; pp 365-382.
-
(2008)
Molecular Modeling of Proteins
, pp. 365-382
-
-
Morris, G.M.1
Lim-Wilby, M.2
-
44
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O.; Olson, A. J. AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 2010, 31, 455-461
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
45
-
-
28644432877
-
Very fast empirical prediction and rationalization of protein pKa values
-
Li, H.; Robertson, A. D.; Jensen, J. H. Very fast empirical prediction and rationalization of protein pKa values Proteins: Struct., Funct., Bioinf. 2005, 61, 704-721
-
(2005)
Proteins: Struct., Funct., Bioinf.
, vol.61
, pp. 704-721
-
-
Li, H.1
Robertson, A.D.2
Jensen, J.H.3
-
46
-
-
0032232405
-
Q: A molecular dynamics program for free energy calculations and empirical valence bond simulations in biomolecular systems
-
Marelius, J.; Kolmodin, K.; Feierberg, I.; Åqvist, J. Q: A molecular dynamics program for free energy calculations and empirical valence bond simulations in biomolecular systems J. Mol. Graphics Modell. 1998, 16, 213-225
-
(1998)
J. Mol. Graphics Modell.
, vol.16
, pp. 213-225
-
-
Marelius, J.1
Kolmodin, K.2
Feierberg, I.3
Åqvist, J.4
-
47
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 1983, 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
48
-
-
79953230555
-
Computational prediction of structure-activity relationships for the binding of aminocyclitols to beta-glucocerebrosidase
-
Diaz, L.; Bujons, J.; Delgado, A.; Gutierrez-de-Teran, H.; Aqvist, J. Computational prediction of structure-activity relationships for the binding of aminocyclitols to beta-glucocerebrosidase J. Chem. Inf. Model. 2011, 51, 601-611
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 601-611
-
-
Diaz, L.1
Bujons, J.2
Delgado, A.3
Gutierrez-De-Teran, H.4
Aqvist, J.5
-
49
-
-
0000115003
-
A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations
-
Lee, F. S.; Warshel, A. A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations J. Chem. Phys. 1992, 97, 3100-3107
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 3100-3107
-
-
Lee, F.S.1
Warshel, A.2
-
50
-
-
0028155689
-
A new method for predicting binding affinity in computer-aided drug design
-
Åqvist, J.; Medina, C.; Samuelsson, J.-E. A new method for predicting binding affinity in computer-aided drug design Protein Eng. 1994, 7, 385-391
-
(1994)
Protein Eng.
, vol.7
, pp. 385-391
-
-
Åqvist, J.1
Medina, C.2
Samuelsson, J.-E.3
-
51
-
-
84855925859
-
Linear Interaction Energy: Method and Applications in Drug Design
-
In; Baron, R. Springer: New York
-
Gutierrez-de-Teran, H.; Aqvist, J. Linear Interaction Energy: Method and Applications in Drug Design. In Computational Drug Discovery and Design; Baron, R., Ed.; Springer: New York, 2012; pp 305-323.
-
(2012)
Computational Drug Discovery and Design
, pp. 305-323
-
-
Gutierrez-De-Teran, H.1
Aqvist, J.2
-
52
-
-
19444375852
-
Exploring blocker binding to a homology model of the open hERG K+ channel using docking and molecular dynamics methods
-
Osterberg, F.; Aqvist, J. Exploring blocker binding to a homology model of the open hERG K+ channel using docking and molecular dynamics methods FEBS Lett. 2005, 579, 2939-2944
-
(2005)
FEBS Lett.
, vol.579
, pp. 2939-2944
-
-
Osterberg, F.1
Aqvist, J.2
-
53
-
-
33750087338
-
Computational analysis of plasmepsin IV bound to an allophenylnorstatine inhibitor
-
Gutierrez-de-Teran, H.; Nervall, M.; Dunn, B. M.; Clemente, J. C.; Aqvist, J. Computational analysis of plasmepsin IV bound to an allophenylnorstatine inhibitor FEBS Lett. 2006, 580, 5910-5916
-
(2006)
FEBS Lett.
, vol.580
, pp. 5910-5916
-
-
Gutierrez-De-Teran, H.1
Nervall, M.2
Dunn, B.M.3
Clemente, J.C.4
Aqvist, J.5
-
54
-
-
38549144657
-
Ligand binding to the voltage-gated Kv1.5 potassium channel in the open state: Docking and computer simulations of a homology model
-
Ander, M.; Luzhkov, V. B.; Aqvist, J. Ligand binding to the voltage-gated Kv1.5 potassium channel in the open state: Docking and computer simulations of a homology model Biophys. J. 2008, 94, 820-831
-
(2008)
Biophys. J.
, vol.94
, pp. 820-831
-
-
Ander, M.1
Luzhkov, V.B.2
Aqvist, J.3
-
55
-
-
84855229636
-
PIC: Protein interactions calculator
-
Tina, K. G.; Bhadra, R.; Srinivasan, N. PIC: Protein interactions calculator Nucleic Acids Res. 2007, 35, 473-476
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 473-476
-
-
Tina, K.G.1
Bhadra, R.2
Srinivasan, N.3
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