Enzyme-based E-RNA sensor array with a hairpin probe: Specific detection of gene mutation

Sensors and Actuators, B: Chemical

Volumn 181, Issue , 2013, Pages 227-233

  Zheng, Yan Jie ^a,b   Huang, Zheng Jun ^a,c   Chen, Jing ^a   Wang, Kun ^a   Liu, Ai Lin ^a   Lin, Xin Hua ^a   Zheng, Wei ^b  

^a FUJIAN MEDICAL UNIVERSITY   (China)

^b FUJIAN INSTITUTE OF MICROBIOLOGY   (China)

^c Fujian Academy of Medical Sciences   (China)

Author keywords

Enzyme amplification; Enzyme based E RNA sensor; Nucleic acid mutations; PML RAR mRNA; Stem loop probe

Indexed keywords

AMPEROMETRIC DETECTION; CONFORMATIONAL CHANGE; ELECTROCHEMICAL VOLTAGE; SINGLE-BASE MISMATCH; SPECIFIC DETECTION; STEM-LOOP; STEM-LOOP STRUCTURES; STERIC HINDRANCES;

BIOSENSORS; COENZYMES; CYCLIC VOLTAMMETRY; GLYCOPROTEINS; PROBES; SENSORS;

RNA;

EID: 84875133521     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2013.01.051     Document Type: Article

References (49)

1. L.M. Stardt Gene expression physiology and pathophysiology of the immune system Trends in Immunology 22 2001 35 40
2. C. Debouck, and P.N. Goodfellow DNA microarrays in drug discovery and development Nature Genetics 21 1999 48 50 (Pubitemid 29031492)
3. Y.W.C. Cao, R.C. Jin, and C.A. Mirkin Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection Science 297 2002 1536 1540 (Pubitemid 34970997)
4. B.S. Gaylord, A.J. Heeger, and G.C. Bazan DNA detection using water-soluble conjugated polymers and peptide nucleic acid probes Proceedings of the National Academy of Sciences of the United States of America 99 2002 10954 10957 (Pubitemid 34920860)
5. S. Ahn, and D.R. Walt Detection of Salmonella spp. using microsphere-based, fiber-optic DNA microarrays Analytical Chemistry 77 2005 5041 5047 (Pubitemid 41076698)
6. T. Endo, K. Kerman, N. Nagatani, Y. Takamura, and E. Tamiya Label-free detection of peptide nucleic acid-DNA hybridization using localized surface plasmon resonance based optical biosensor Analytical Chemistry 77 2005 6976 6984 (Pubitemid 41547294)
7. F. Patolsky, A. Lichtenstein, and I. Willner Amplified microgravimetric quartz-crystal-microbalance assay of DNA using oligonucleotide-functionalized liposomes or biotinylated liposomes Journal of the American Chemical Society 122 2000 418 419 (Pubitemid 30061085)
8. S.O. Kelly, J.K. Barton, N.M. Jackson, and M.G. Hill Electrochemistry of methylene blue bound to a DNA-modified electrode Bioconjugate Chemistry 8 1997 31 37 (Pubitemid 27064219)
9. S. Hahn, S. Mergenthaler, B. Zimmermann, and W. Holzgreve Nucleic acid based biosensors: the desires of the user Bioelectrochemistry 67 2005 151 154 (Pubitemid 41191210)
10. E. Paleček, and M. Bartošík Electrochemistry of nucleic acids Chemical Reviews 112 2012 3427 3481
11. F. Wei, C.L. Chen, L. Zhai, N. Zhang, and X.S. Zhao Recognition of single nucleotide polymorphisms using scanning potential hairpin denaturation Journal of the American Chemical Society 127 2005 5306 5307 (Pubitemid 40569827)
12. K.M. Millan, and S.R. Mikkelsen Sequence-selective biosensor for DNA based on electroactive hybridization indicators Analytical Chemistry 65 1993 2317 2323
13. K.M. Millan, A. Saraullo, and S.R. Mikkelsen Voltammetric DNA biosensor for cystic fibrosis based on a modified carbon paste electrode Analytical Chemistry 66 1994 2943 2948
14. F. Patolsky, A. Lichtenstein, and I. Willner Detection of single-base DNA mutations by enzyme-amplified electronic transduction Nature Biotechnology 19 2001 253 257 (Pubitemid 32220567)
15. L.Y. Zhang, D. Lia, W.L. Menga, Q. Huanga, Y. Sub, L. Wanga, S. Songa, and C. Fana Sequence-specific DNA detection by using biocatalyzed electrochemiluminescence and non-fouling surfaces Biosensors and Bioelectronics 25 2009 368 372
16. K. Wang, Z.L. Sun, M.J. Feng, A.L. Liu, S.Y. Yang, Y.Z. Chen, and X.H. Lin Design of a sandwich-mode amperometric biosensor for detection of PML/RARα fusion gene using locked nucleic acids on gold electrode Biosensors and Bioelectronics 26 2011 2870 2876
17. S. Campuzano, F. Kuralay, M.J. Lobo-Castañón, M. Bartošík, K. Vyavahare, E. Paleček, D.A. Haake, and J. Wang Ternary monolayers as DNA recognition interfaces for direct and sensitive electrochemical detection in untreated clinical samples Biosensors and Bioelectronics 26 2011 3577 3583
18. J. Wu, S. Campuzano, C. Halford, D.A. Haake, and J. Wang Ternary surface monolayers for ultrasensitive (zeptomole) amperometric detection of nucleic acid hybridization without signal amplification Analytical Chemistry 82 2010 8830 8837
19. X.H. Fang, J.W. Li, J. Perlette, W.H. Tan, and K.M. Wang Molecular beacons: novel fluorescent probes Analytical Chemistry 72 2000 747 753
20. J. Li, X.H. Fang, S.M. Schuster, and W.H. Tan Molecular beacons: a novel approach to detect protein-DNA interactions Angewandte Chemie International Edition 39 2000 1049 1052 (Pubitemid 30217241)
21. S. Tyagi, and F.R. Kramer Molecular beacons: probes that fluoresce upon hybridization Nature Biotechnology 14 1996 303 308
22. J. Yao, Z. Liu, L.S. Ko, G. Pan, and Y. Jiang Quantitative detection of HIV-1 RNA using NucliSens EasyQ HIV-1 assay Journal of Virological Methods 129 2005 40 46 (Pubitemid 41224770)
23. L.A. Zheleznaya, D.S. Kopein, E.A. Rogulin, S.I. Gubanov, N.I. Matvienko, and Review: nicking endonucleases Analytical Biochemistry 348 2006 123 126
24. C.M. Strohsahl, H. Du, B.L. Miller, and T.D. Krauss Towards single-spot multianalyte molecular beacon biosensors Talanta 67 2005 479 485 (Pubitemid 41240583)
25. M. Culha, D.L. Stokes, G.D. Griffin, and T. Vo-Dinh Application of a miniature biochip using the molecular beacon probe in breast cancer gene BRCA1 detection Biosensors and Bioelectronics 19 2004 1007 1012 (Pubitemid 38264484)
26. J. Zhao, D. He, H. He, L. Li, L.L. Zhang, and X.Y. Wang Primary application study in early diagnosis of bladder cancer by survivin molecular beacons Urology 70 2007 60 64 (Pubitemid 47081103)
27. 2-PCB on adrenocortical steroidogenesis in H295R human adrenocortical carcinoma cells Chemosphere 63 2006 772 784
28. T. Hianik, V. Ostatná, M. Sonlajtnerova, and I. Grman Influence of ionic strength, pH and aptamer configuration for binding affinity to thrombin Bioelectrochemistry 70 2007 127 133 (Pubitemid 44960191)
29. G. Bonnet, S. Tyagi, A. Libchaber, and F.R. Kramer Thermodynamic basis of the enhancement specificity of structured DNA probes Proceedings of the National Academy of Sciences of the United States of America 96 1999 6171 6176 (Pubitemid 29256638)
30. D.P. Bratu, B.J. Cha, M.M. Mhlanga, F.R. Kramer, and S. Tyagi Visualizing the distribution and transport of mRNAs in living cells Proceedings of the National Academy of Sciences of the United States of America 100 2003 13308 13313 (Pubitemid 37444738)
31. E. Paleček Surface-attached molecular beacons light the way for DNA sequencing Trends in Biotechnology 22 2004 55 58 (Pubitemid 38130169)
32. A.A. Lubin, and K.W. Plaxco Folding-based electrochemical biosensors: the case for responsive nucleic acid architectures Accounts of Chemical Research 43 2010 496 505
33. D. Li, S.P. Song, and C.H. Fan Target-responsive structural switching for nucleic acid-based sensors Accounts of Chemical Research 43 2010 631 641
34. Y. Xiao, X.G. Qu, K.W. Plaxco, and A.J. Heeger Label-free electrochemical detection of DNA in blood serum via target-induced resolution of an electrode-bound DNA pseudoknot Journal of the American Chemical Society 129 2007 11896 11897 (Pubitemid 47512009)
35. E.C. Jorge, T. Moshe, and K. Hagop Chronic myelogenous leukemia: a review American Journal of Medicine 100 1996 555 570
36. M. Christel, H. Evelin, and F. Christina The BCR/ABL-extra signal fluorescence in situ hybridization system reliably detects deletions upstream of the ABL locus: implications for reporting of results and followup of chronic myelogenous leukemia patients Cancer Genetics and Cytogenetics 136 2002 149 150
37. I. Jilani, H. Kantarjian, H. Faraji, M. Gorre, J. Cortes, O. Ottmann, K. Bhalla, S. O'Brien, F. Giles, and M. Albitar An immunological method for the detection of BCR-ABL fusion protein and monitoring its activation Leukemia Research 32 2008 936 943
38. X. Yataganas, K. Stamatopoulos, and I. Xefteri Reverse transcription polymerase chain reaction for the diagnosis and molecular monitoring of the PML/RAR [alpha] fusion gene in acute promyelocytic leukemia Cancer Genetics and Cytogenetics 84 1995 91 94 (Pubitemid 26013531)
39. D. Grimwade, A. Biondi, M.J. Mozziconacci, and A. Hagemeijer Characterization of acute promyelocytic leukemia cases lacking the classic t (15; 17): results of the European Working Party Blood 96 2000 1297 1308 (Pubitemid 30658458)
40. R.E. Gallagher Quantitative real-time RT-PCR analysis of PML-RAR alpha mRNA in acute promyelocytic leukemia: assessment of prognostic significance in adult patients from intergroup protocol 0129 Blood 101 2003 2521 2528 (Pubitemid 36857607)
41. V. Gau, S.C. Ma, H. Wang, J. Tsukuda, J. Kibler, and D.A. Haake Electrochemical molecular analysis without nucleic acid amplification Methods 37 2005 73 83 (Pubitemid 41443377)
42. J.J. Gau, E.H. Lan, B. Dunn, C.M. Ho, and J.C.S. Woo A MEMS-based amperometric detector for E. coli bacteria - using self-assembled monolayers Biosensors and Bioelectronics 16 2001 745 755 (Pubitemid 33000204)
43. J. Zhang, S. Song, L. Wang, D. Pan, and C. Fan A gold nanoparticle-based chronocoulometric DNA sensor for amplified detection of DNA Nature Protocols 2 2007 2888 2895
44. T.M. Herne, and M.J. Tarlov Characterization of DNA probes immobilized on gold surfaces Journal of the American Chemical Society 119 1997 8916 8920 (Pubitemid 27421377)
45. A.B. Steel, T.M. Herne, and M.J. Tarlov Electrochemical quantitation of DNA immobilized on gold Analytical Chemistry 70 1998 4670 4677
46. G.S. Bang, S. Cho, and B.G. Kim A novel electrochemical detection method for aptamer biosensors Biosensors and Bioelectronics 21 2005 863 870 (Pubitemid 41532269)
47. L.Q. Lin, Q.C. Liu, L.M. Wang, A.L. Liu, S.H. Weng, Y. Lei, W. Chen, X.H. Lin, and Y.Z. Chen Enzyme-amplified electrochemical biosensor for detection of PML-RARα fusion gene based on hairpin DNA probe Biosensors and Bioelectronics 28 2011 277 283
48. G. Liu, Y. Wan, V. Gau, J. Zhang, L.H. Wang, S.P. Song, and C.H. Fan An enzyme-based E-DNA sensor for sequence-specific detection of femtomolar DNA targets Journal of the American Chemical Society 130 2008 6820 6825 (Pubitemid 351748419)
49. A. Das, and M.H. Hecht Peroxidase activity of de novo heme proteins immobilized on electrodes Journal of Inorganic Biochemistry 101 2007 1820 1826 (Pubitemid 47576222)