-
1
-
-
0035902108
-
Genome maintenance mechanisms for preventing cancer
-
10.1038/35077232, 11357144
-
Hoeijmakers J. Genome maintenance mechanisms for preventing cancer. Nature 2001, 411:366-374. 10.1038/35077232, 11357144.
-
(2001)
Nature
, vol.411
, pp. 366-374
-
-
Hoeijmakers, J.1
-
2
-
-
0034283878
-
Linking DNA damage and neurodegeneration
-
10.1016/S0166-2236(00)01625-8, 10941191
-
Rolig RL, McKinnon PJ. Linking DNA damage and neurodegeneration. Trends Neurosci 2000, 23:417-424. 10.1016/S0166-2236(00)01625-8, 10941191.
-
(2000)
Trends Neurosci
, vol.23
, pp. 417-424
-
-
Rolig, R.L.1
McKinnon, P.J.2
-
3
-
-
34249066085
-
PCNA, the maestro of the replication fork
-
10.1016/j.cell.2007.05.003, 17512402
-
Moldovan G, Pfander B, Jentsch S. PCNA, the maestro of the replication fork. Cell 2007, 129(4):665-679. 10.1016/j.cell.2007.05.003, 17512402.
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 665-679
-
-
Moldovan, G.1
Pfander, B.2
Jentsch, S.3
-
4
-
-
0036557024
-
UV-induced DNA damage and repair: a review
-
10.1039/b201230h, 12661961
-
Sinha RP, Hader DP. UV-induced DNA damage and repair: a review. Photochem Photobiol Sci 2002, 1:225-236. 10.1039/b201230h, 12661961.
-
(2002)
Photochem Photobiol Sci
, vol.1
, pp. 225-236
-
-
Sinha, R.P.1
Hader, D.P.2
-
5
-
-
0001159099
-
The induction and repair of DNA photodamage in the environment
-
New York: Plenum, Young A, Bjorn L, Moan J, Nultsch W
-
Mitchell D, Karentz D. The induction and repair of DNA photodamage in the environment. Environmental UV Photobiology 1993, 345-377. New York: Plenum, Young A, Bjorn L, Moan J, Nultsch W.
-
(1993)
Environmental UV Photobiology
, pp. 345-377
-
-
Mitchell, D.1
Karentz, D.2
-
7
-
-
68249091647
-
Checkpoint mechanisms at the intersection between DNA damage and repair
-
10.1016/j.dnarep.2009.04.022, 19497792
-
Lazzaro F, Giannattasio M, Puddu F, Granata M, Pellicioli A, Plevani P, Muzi-Falconi M. Checkpoint mechanisms at the intersection between DNA damage and repair. DNA Repair 2009, 8(9):1055-1067. 10.1016/j.dnarep.2009.04.022, 19497792.
-
(2009)
DNA Repair
, vol.8
, Issue.9
, pp. 1055-1067
-
-
Lazzaro, F.1
Giannattasio, M.2
Puddu, F.3
Granata, M.4
Pellicioli, A.5
Plevani, P.6
Muzi-Falconi, M.7
-
8
-
-
79960383687
-
Mind the gap: Keeping UV lesions in check
-
10.1016/j.dnarep.2011.04.030, 3171152, 21602108
-
Novarina D, Amara F, Lazzaro F, Plevani P, Muzi-Falconi M. Mind the gap: Keeping UV lesions in check. DNA Repair 2011, 10(7):751-759. 10.1016/j.dnarep.2011.04.030, 3171152, 21602108.
-
(2011)
DNA Repair
, vol.10
, Issue.7
, pp. 751-759
-
-
Novarina, D.1
Amara, F.2
Lazzaro, F.3
Plevani, P.4
Muzi-Falconi, M.5
-
9
-
-
77953915005
-
Ubiquitin signalling in DNA replication and repair
-
10.1038/nrm2921, 20551964
-
Ulrich HD, Walden H. Ubiquitin signalling in DNA replication and repair. Nat Rev Mol Cell Biol 2010, 11(7):479-489. 10.1038/nrm2921, 20551964.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, Issue.7
, pp. 479-489
-
-
Ulrich, H.D.1
Walden, H.2
-
10
-
-
33644778778
-
A DNA integrity network in the yeast Saccharomyces cerevisiae
-
10.1016/j.cell.2005.12.036, 16487579
-
Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 2006, 124(5):1069-1081. 10.1016/j.cell.2005.12.036, 16487579.
-
(2006)
Cell
, vol.124
, Issue.5
, pp. 1069-1081
-
-
Pan, X.1
Ye, P.2
Yuan, D.S.3
Wang, X.4
Bader, J.S.5
Boeke, J.D.6
-
11
-
-
4544281398
-
Choreography of the DNA damage response
-
10.1016/j.cell.2004.08.015, 15369670
-
Lisby M, Barlow JH, Burgess RC, Rothstein R. Choreography of the DNA damage response. Cell 2004, 118(6):699-713. 10.1016/j.cell.2004.08.015, 15369670.
-
(2004)
Cell
, vol.118
, Issue.6
, pp. 699-713
-
-
Lisby, M.1
Barlow, J.H.2
Burgess, R.C.3
Rothstein, R.4
-
12
-
-
84878468681
-
Databases and bioinformatics tools for the study of DNA repair
-
Article ID 475718
-
Milanowska K, Rother K, Bujnicki J. Databases and bioinformatics tools for the study of DNA repair. Mol Biol Int 2011, 2011:Article ID 475718.
-
(2011)
Mol Biol Int
, vol.2011
-
-
Milanowska, K.1
Rother, K.2
Bujnicki, J.3
-
13
-
-
0344982141
-
Dynamics of the cell cycle: checkpoints, sizers, and timers
-
10.1016/S0006-3495(03)74778-X, 1303665, 14645053
-
Qu Z, MacLellan WR, Weiss JN. Dynamics of the cell cycle: checkpoints, sizers, and timers. Biophys J 2003, 85(6):3600-3611. 10.1016/S0006-3495(03)74778-X, 1303665, 14645053.
-
(2003)
Biophys J
, vol.85
, Issue.6
, pp. 3600-3611
-
-
Qu, Z.1
MacLellan, W.R.2
Weiss, J.N.3
-
14
-
-
53749088166
-
Mathematical modeling and sensitivity analysis of G1/S phase in the cell cycle including the DNA-damage signal transduction pathway
-
10.1016/j.biosystems.2008.05.016, 18606207
-
Iwamoto K, Tashima Y, Hamada H, Eguchi Y, Okamoto M. Mathematical modeling and sensitivity analysis of G1/S phase in the cell cycle including the DNA-damage signal transduction pathway. BioSystems 2008, 94(1-2):109-117. 10.1016/j.biosystems.2008.05.016, 18606207.
-
(2008)
BioSystems
, vol.94
, Issue.1-2
, pp. 109-117
-
-
Iwamoto, K.1
Tashima, Y.2
Hamada, H.3
Eguchi, Y.4
Okamoto, M.5
-
15
-
-
79751531809
-
Mathematical modeling of cell cycle regulation in response to DNA damage: Exploring mechanisms of cell-fate determination
-
10.1016/j.biosystems.2010.11.011, 21095219
-
Iwamoto K, Hamada H, Eguchi Y, Okamoto M. Mathematical modeling of cell cycle regulation in response to DNA damage: Exploring mechanisms of cell-fate determination. BioSystems 2011, 103(3):384-391. 10.1016/j.biosystems.2010.11.011, 21095219.
-
(2011)
BioSystems
, vol.103
, Issue.3
, pp. 384-391
-
-
Iwamoto, K.1
Hamada, H.2
Eguchi, Y.3
Okamoto, M.4
-
16
-
-
67449152160
-
Computational systems biology of the cell cycle
-
10.1093/bib/bbp005, 19270018
-
Csikász-Nagy A. Computational systems biology of the cell cycle. Brief Bioinform 2009, 10(4):424-434. 10.1093/bib/bbp005, 19270018.
-
(2009)
Brief Bioinform
, vol.10
, Issue.4
, pp. 424-434
-
-
Csikász-Nagy, A.1
-
17
-
-
79951828759
-
A matter of life or death: modeling DNA damage and repair in bacteria
-
10.1016/j.bpj.2010.12.3713, 3037714, 21320424
-
Karschau J, de Almeida C, Richard MC, Miller S, Booth IR, Grebogi C, de Moura AP. A matter of life or death: modeling DNA damage and repair in bacteria. Biophys J 2011, 100(4):814-821. 10.1016/j.bpj.2010.12.3713, 3037714, 21320424.
-
(2011)
Biophys J
, vol.100
, Issue.4
, pp. 814-821
-
-
Karschau, J.1
de Almeida, C.2
Richard, M.C.3
Miller, S.4
Booth, I.R.5
Grebogi, C.6
de Moura, A.P.7
-
18
-
-
34047230771
-
UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model
-
10.1371/journal.pcbi.0030041, 1828700, 17367202
-
Krishna S, Maslov S, Sneppen K. UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model. PLoS Comput Biol 2007, 3(3):e41. 10.1371/journal.pcbi.0030041, 1828700, 17367202.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.3
-
-
Krishna, S.1
Maslov, S.2
Sneppen, K.3
-
19
-
-
65249133930
-
A mathematical model for the detection mechanism of DNA double-strand breaks depending on autophosphorylation of ATM
-
10.1371/journal.pone.0005131, 2667630, 19365581
-
Mouri K, Nacher J, Akutsu T. A mathematical model for the detection mechanism of DNA double-strand breaks depending on autophosphorylation of ATM. PLoS ONE 2009, 4(4):e5131. 10.1371/journal.pone.0005131, 2667630, 19365581.
-
(2009)
PLoS ONE
, vol.4
, Issue.4
-
-
Mouri, K.1
Nacher, J.2
Akutsu, T.3
-
20
-
-
79960086346
-
A mathematical model for DNA damage and repair
-
Article ID 352603
-
Crooke PS, Parl FF. A mathematical model for DNA damage and repair. J Nucleic Acids 2010, 2010:Article ID 352603.
-
(2010)
J Nucleic Acids
, vol.2010
-
-
Crooke, P.S.1
Parl, F.F.2
-
21
-
-
0037089147
-
A quantitative model of human DNA base excision repair. I. mechanistic insights
-
10.1093/nar/30.8.1817, 113225, 11937636
-
Sokhansanj BA, Rodrigue GR, Fitch JP, Wilson III DM. A quantitative model of human DNA base excision repair. I. mechanistic insights. Nucleic Acids Res 2002, 30(8):1817-1825. 10.1093/nar/30.8.1817, 113225, 11937636.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.8
, pp. 1817-1825
-
-
Sokhansanj, B.A.1
Rodrigue, G.R.2
Fitch, J.P.3
Wilson III, D.M.4
-
22
-
-
24044449257
-
Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies
-
10.1016/j.molcel.2005.06.036, 16137623
-
Politi A, Moné MJ, Houtsmuller AB, Hoogstraten D, Vermeulen W, Heinrich R, van Driel R. Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies. Mol Cell 2005, 19(5):679-690. 10.1016/j.molcel.2005.06.036, 16137623.
-
(2005)
Mol Cell
, vol.19
, Issue.5
, pp. 679-690
-
-
Politi, A.1
Moné, M.J.2
Houtsmuller, A.B.3
Hoogstraten, D.4
Vermeulen, W.5
Heinrich, R.6
van Driel, R.7
-
23
-
-
35548985406
-
A mathematical model for human nucleotide excision repair: damage recognition by random order assembly and kinetic proofreading
-
10.1016/j.jtbi.2007.07.025, 2702209, 17869273
-
Kesseler KJ, Kaufmann WK, Reardon JT, Elston T, Sancar A. A mathematical model for human nucleotide excision repair: damage recognition by random order assembly and kinetic proofreading. J Theor Biol 2007, 249(2):361-375. 10.1016/j.jtbi.2007.07.025, 2702209, 17869273.
-
(2007)
J Theor Biol
, vol.249
, Issue.2
, pp. 361-375
-
-
Kesseler, K.J.1
Kaufmann, W.K.2
Reardon, J.T.3
Elston, T.4
Sancar, A.5
-
24
-
-
77951819090
-
Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair
-
10.1083/jcb.200909175, 2867314, 20439997
-
Luijsterburg MS, von Bornstaedt G, Gourdin AM, Politi AZ, Moné MJ, Warmerdam DO, Goedhart J, Vermeulen W, van Driel R, Höffer T. Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair. J Cell Biol 2010, 189(3):445-463. 10.1083/jcb.200909175, 2867314, 20439997.
-
(2010)
J Cell Biol
, vol.189
, Issue.3
, pp. 445-463
-
-
Luijsterburg, M.S.1
von Bornstaedt, G.2
Gourdin, A.M.3
Politi, A.Z.4
Moné, M.J.5
Warmerdam, D.O.6
Goedhart, J.7
Vermeulen, W.8
van Driel, R.9
Höffer, T.10
-
25
-
-
0037068455
-
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
-
10.1038/nature00991, 12226657
-
Hoege C, Pfander B, Moldovan G, Pyrowolakis G, Jentsch S. RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature 2002, 419:135-141. 10.1038/nature00991, 12226657.
-
(2002)
Nature
, vol.419
, pp. 135-141
-
-
Hoege, C.1
Pfander, B.2
Moldovan, G.3
Pyrowolakis, G.4
Jentsch, S.5
-
26
-
-
80052754015
-
Roles of sequential ubiquitination of PCNA in DNA-damage tolerance
-
10.1016/j.febslet.2011.04.044, 21536034
-
Zhang W, Qin Z, Zhang X, Xiao W. Roles of sequential ubiquitination of PCNA in DNA-damage tolerance. FEBS Lett 2011, 585(18):2786-2794. 10.1016/j.febslet.2011.04.044, 21536034.
-
(2011)
FEBS Lett
, vol.585
, Issue.18
, pp. 2786-2794
-
-
Zhang, W.1
Qin, Z.2
Zhang, X.3
Xiao, W.4
-
27
-
-
77953694683
-
Ubiquitin-dependent DNA damage bypass is separable from genome replication
-
10.1038/nature09097, 2888004, 20453836
-
Daigaku Y, Davies AA, Ulrich HD. Ubiquitin-dependent DNA damage bypass is separable from genome replication. Nature 2010, 465(7300):951-955. 10.1038/nature09097, 2888004, 20453836.
-
(2010)
Nature
, vol.465
, Issue.7300
, pp. 951-955
-
-
Daigaku, Y.1
Davies, A.A.2
Ulrich, H.D.3
-
28
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT. Exact stochastic simulation of coupled chemical reactions. J Phys Chem 1977, 81(25):2340-2361.
-
(1977)
J Phys Chem
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
29
-
-
0033575659
-
Cell cycle progression in the presence of irreparable DNA damage is controlled by a Mec1- and Rad53-dependent checkpoint in budding yeast
-
10.1093/emboj/18.16.4485, 1171523, 10449414
-
Neecke H, Lucchini G, Longhese M. Cell cycle progression in the presence of irreparable DNA damage is controlled by a Mec1- and Rad53-dependent checkpoint in budding yeast. EMBO J 1999, 18(16):4485-97. 10.1093/emboj/18.16.4485, 1171523, 10449414.
-
(1999)
EMBO J
, vol.18
, Issue.16
, pp. 4485-4497
-
-
Neecke, H.1
Lucchini, G.2
Longhese, M.3
-
30
-
-
84878459352
-
Influence of deubiquitinating enzymes on mutagenesis in Saccharomyces cerevisiae
-
Gong J, Siede W. Influence of deubiquitinating enzymes on mutagenesis in Saccharomyces cerevisiae. Internet J Microb 2011, 9(2).
-
(2011)
Internet J Microb
, vol.9
, Issue.2
-
-
Gong, J.1
Siede, W.2
-
31
-
-
77952336245
-
Distinct consequences of posttranslational modification by linear versus K63-linked polyubiquitin chain
-
Zhao S, Ulrich H. Distinct consequences of posttranslational modification by linear versus K63-linked polyubiquitin chain. P Natl Acad Sci USA 2010, 107(17):7704-7709.
-
(2010)
P Natl Acad Sci USA
, vol.107
, Issue.17
, pp. 7704-7709
-
-
Zhao, S.1
Ulrich, H.2
-
32
-
-
27144491909
-
Nuclear dynamics of PCNA in DNA replication and repair
-
10.1128/MCB.25.21.9350-9359.2005, 1265825, 16227586
-
Essers J, Theil AF, Baldeyron C, van Cappellen WA, Houtsmuller AB, Kanaar R, Vermeulen W. Nuclear dynamics of PCNA in DNA replication and repair. Mol Cell Biol 2005, 25(21):9350-9359. 10.1128/MCB.25.21.9350-9359.2005, 1265825, 16227586.
-
(2005)
Mol Cell Biol
, vol.25
, Issue.21
, pp. 9350-9359
-
-
Essers, J.1
Theil, A.F.2
Baldeyron, C.3
van Cappellen, W.A.4
Houtsmuller, A.B.5
Kanaar, R.6
Vermeulen, W.7
-
33
-
-
0020479562
-
The mechanism of ubiquitin activating enzyme. A kinetic and equilibrium analysis
-
Haas A, Rose I. The mechanism of ubiquitin activating enzyme. A kinetic and equilibrium analysis. J Biol Chem 1982, 257(17):10329-10337.
-
(1982)
J Biol Chem
, vol.257
, Issue.17
, pp. 10329-10337
-
-
Haas, A.1
Rose, I.2
-
34
-
-
0033525582
-
Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair
-
10.1016/S0092-8674(00)80575-9, 10089880
-
Hofmann RM, Pickart CM. Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair. Cell 1999, 96:645-653. 10.1016/S0092-8674(00)80575-9, 10089880.
-
(1999)
Cell
, vol.96
, pp. 645-653
-
-
Hofmann, R.M.1
Pickart, C.M.2
-
35
-
-
0035875079
-
Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer
-
Vandemark AP, Hofmann RM, Tsui C, Pickart CM, Wolberger C. Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer. Structure 2001, 105:711-720.
-
(2001)
Structure
, vol.105
, pp. 711-720
-
-
Vandemark, A.P.1
Hofmann, R.M.2
Tsui, C.3
Pickart, C.M.4
Wolberger, C.5
-
36
-
-
71349084952
-
Mechanistic analysis of PCNA poly-ubiquitylation by the ubiquitin protein ligases Rad18 and Rad5
-
10.1038/emboj.2009.303, 2770100, 19851286
-
Parker J, Ulrich HD. Mechanistic analysis of PCNA poly-ubiquitylation by the ubiquitin protein ligases Rad18 and Rad5. EMBO J 2009, 28:3657-3666. 10.1038/emboj.2009.303, 2770100, 19851286.
-
(2009)
EMBO J
, vol.28
, pp. 3657-3666
-
-
Parker, J.1
Ulrich, H.D.2
-
37
-
-
40649097306
-
Activation of ubiquitin-dependent DNA damage bypass is mediated by replication protein A
-
10.1016/j.molcel.2007.12.016, 2507760,2507760, 18342608 HD H.U.
-
Davies A, Huttner D, Daigaku Y, Chen S, HD HU. Activation of ubiquitin-dependent DNA damage bypass is mediated by replication protein A. Mol Cell 2008, 29(5):625-636. 10.1016/j.molcel.2007.12.016, 2507760,2507760, 18342608.
-
(2008)
Mol Cell
, vol.29
, Issue.5
, pp. 625-636
-
-
Davies, A.1
Huttner, D.2
Daigaku, Y.3
Chen, S.4
-
38
-
-
38049079191
-
Architecture and assembly of poly-SUMO Chains on PCNA in Saccharomyces cerevisiae
-
10.1016/j.jmb.2007.12.008, 18155241
-
Windecker H, Ulrich HD. Architecture and assembly of poly-SUMO Chains on PCNA in Saccharomyces cerevisiae. J Mol Biol 2008, 376:221-231. 10.1016/j.jmb.2007.12.008, 18155241.
-
(2008)
J Mol Biol
, vol.376
, pp. 221-231
-
-
Windecker, H.1
Ulrich, H.D.2
-
39
-
-
19444383801
-
Trading places: how do DNA polymerases switch during translesion DNA synthesis?
-
10.1016/j.molcel.2005.03.032, 15916957
-
Friedberg E, Lehmann A, Fuchs R. Trading places: how do DNA polymerases switch during translesion DNA synthesis?. Mol Cell 2005, 18:499-505. 10.1016/j.molcel.2005.03.032, 15916957.
-
(2005)
Mol Cell
, vol.18
, pp. 499-505
-
-
Friedberg, E.1
Lehmann, A.2
Fuchs, R.3
-
40
-
-
0035034974
-
Role of DNA polymerase η in the bypass of a (6-4) TT photoproduct
-
10.1128/MCB.21.10.3558-3563.2001, 100277, 11313481
-
Johnson RE, Haracska L, Prakash S, Prakash L. Role of DNA polymerase η in the bypass of a (6-4) TT photoproduct. Mol Cell Biol 2001, 21(10):3558-3563. 10.1128/MCB.21.10.3558-3563.2001, 100277, 11313481.
-
(2001)
Mol Cell Biol
, vol.21
, Issue.10
, pp. 3558-3563
-
-
Johnson, R.E.1
Haracska, L.2
Prakash, S.3
Prakash, L.4
-
41
-
-
0029952294
-
Thymine-thymine dimer bypass by yeast DNA polymerase
-
10.1126/science.272.5268.1646, 8658138
-
Nelson JR, Lawrence CW, Hinkle DC. Thymine-thymine dimer bypass by yeast DNA polymerase. Science 1996, 272:1646-1649. 10.1126/science.272.5268.1646, 8658138.
-
(1996)
Science
, vol.272
, pp. 1646-1649
-
-
Nelson, J.R.1
Lawrence, C.W.2
Hinkle, D.C.3
-
42
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
10.1002/(SICI)1097-0061(199807)14:10<953::AID-YEA293>3.0.CO;2-U, 9717241
-
Longtine MS, Mckenzie III A, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 1998, 14(10):953-961. 10.1002/(SICI)1097-0061(199807)14:10<953::AID-YEA293>3.0.CO;2-U, 9717241.
-
(1998)
Yeast
, vol.14
, Issue.10
, pp. 953-961
-
-
Longtine, M.S.1
Mckenzie III, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
43
-
-
0029895807
-
Yeast pip3/mec3 mutants fail to delay entry into S phase and to slow DNA replication in response to DNA damage, and they define a functional link between Mec3 and DNA primase
-
231317, 8668138
-
Longhese M, Fraschini R, Plevani P, Lucchini G. Yeast pip3/mec3 mutants fail to delay entry into S phase and to slow DNA replication in response to DNA damage, and they define a functional link between Mec3 and DNA primase. Mol Cell Biol 1996, 16(7):3235-3244. 231317, 8668138.
-
(1996)
Mol Cell Biol
, vol.16
, Issue.7
, pp. 3235-3244
-
-
Longhese, M.1
Fraschini, R.2
Plevani, P.3
Lucchini, G.4
-
44
-
-
0344629427
-
Ubiquitin depletion as a key mediator of toxicity by translational inhibitors
-
10.1128/MCB.23.24.9251-9261.2003, 309641, 14645527
-
Hanna J, Leggett D, Finley D. Ubiquitin depletion as a key mediator of toxicity by translational inhibitors. Mol Cell Biol 2003, 23(24):9251-9261. 10.1128/MCB.23.24.9251-9261.2003, 309641, 14645527.
-
(2003)
Mol Cell Biol
, vol.23
, Issue.24
, pp. 9251-9261
-
-
Hanna, J.1
Leggett, D.2
Finley, D.3
-
45
-
-
84855881475
-
RNase H and Postreplication Repair protect cells from ribonucleotides incorporated in DNA
-
10.1016/j.molcel.2011.12.019, 3262129, 22244334
-
Lazzaro F, Novarina D, Amara F, Watt DL, Stone JE, Costanzo V, Burgers PM, Kunkel TA, Plevani P, Muzi-Falconi M. RNase H and Postreplication Repair protect cells from ribonucleotides incorporated in DNA. Mol Cell 2012, 45:99-110. 10.1016/j.molcel.2011.12.019, 3262129, 22244334.
-
(2012)
Mol Cell
, vol.45
, pp. 99-110
-
-
Lazzaro, F.1
Novarina, D.2
Amara, F.3
Watt, D.L.4
Stone, J.E.5
Costanzo, V.6
Burgers, P.M.7
Kunkel, T.A.8
Plevani, P.9
Muzi-Falconi, M.10
-
46
-
-
59249091313
-
In vivo detection and characterization of sumoylation targets in Saccharomyces cerevisiae
-
Ulrich HD, Davies AA. In vivo detection and characterization of sumoylation targets in Saccharomyces cerevisiae. Methods Mol Biol 2009, 497(II):81-103.
-
(2009)
Methods Mol Biol
, vol.497
, Issue.2
, pp. 81-103
-
-
Ulrich, H.D.1
Davies, A.A.2
-
49
-
-
0142215475
-
Global analysis of protein expression in yeast
-
10.1038/425671a, 14562083
-
Ghaemmaghami S, Huh W, Bower K, Howson R, Belle A, Dephoure N, et al. Global analysis of protein expression in yeast. Nature 2003, 425(6959):671-672. 10.1038/425671a, 14562083.
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 671-672
-
-
Ghaemmaghami, S.1
Huh, W.2
Bower, K.3
Howson, R.4
Belle, A.5
Dephoure, N.6
-
50
-
-
84858588614
-
Saccharomyces Genome Database: the genomics resource of budding yeast
-
Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED. Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res Jan 2012, 40(Database issue):D700-D705.
-
(2012)
Nucleic Acids Res Jan
, vol.40
, Issue.DATABASE ISSUE
-
-
Cherry, J.M.1
Hong, E.L.2
Amundsen, C.3
Balakrishnan, R.4
Binkley, G.5
Chan, E.T.6
Christie, K.R.7
Costanzo, M.C.8
Dwight, S.S.9
Engel, S.R.10
Fisk, D.G.11
Hirschman, J.E.12
Hitz, B.C.13
Karra, K.14
Krieger, C.J.15
Miyasato, S.R.16
Nash, R.S.17
Park, J.18
Skrzypek, M.S.19
Simison, M.20
Weng, S.21
Wong, E.D.22
more..
-
51
-
-
49549122021
-
Saccharomyces Genome Database
-
SGD project
-
SGD project Saccharomyces Genome Database. 2011, [http://www.yeastgenome.org], SGD project.
-
(2011)
-
-
-
52
-
-
57149143976
-
A quantitative estimation of the global translational activity in logarithmically growing yeast cells
-
VonDerHaar T. A quantitative estimation of the global translational activity in logarithmically growing yeast cells. BMC Syst Biol 2008, 2(87).
-
(2008)
BMC Syst Biol
, vol.2
, Issue.87
-
-
VonDerHaar, T.1
-
53
-
-
34548511797
-
The size of the nucleus increases as yeast cells grow
-
10.1091/mbc.E06-10-0973, 1951755, 17596521
-
Jorgensen P, Edgington N, Schneider B, Rupes I, Tyers M, Futcher B. The size of the nucleus increases as yeast cells grow. Mol Biol Cell 2007, 18:3523-3532. 10.1091/mbc.E06-10-0973, 1951755, 17596521.
-
(2007)
Mol Biol Cell
, vol.18
, pp. 3523-3532
-
-
Jorgensen, P.1
Edgington, N.2
Schneider, B.3
Rupes, I.4
Tyers, M.5
Futcher, B.6
-
54
-
-
70350417485
-
Synthesis of free and Proliferating Cell Nuclear Antigen-bound polyubiquitin chains by the RING E3 ubiquitin ligase Rad5
-
10.1074/jbc.M109.043885, 2785563, 19706603
-
Carlile CM, Pickart CM, Matunis MJ, Cohen RE. Synthesis of free and Proliferating Cell Nuclear Antigen-bound polyubiquitin chains by the RING E3 ubiquitin ligase Rad5. J Biol Chem 2009, 284(43):29326-29334. 10.1074/jbc.M109.043885, 2785563, 19706603.
-
(2009)
J Biol Chem
, vol.284
, Issue.43
, pp. 29326-29334
-
-
Carlile, C.M.1
Pickart, C.M.2
Matunis, M.J.3
Cohen, R.E.4
-
55
-
-
34848877881
-
Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification
-
Notenboom V, Hibbert RG, van Rossum-Fikkert SE, Olsen JV, Mann M, Sixma TK. Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Mol Carcinog 2007, 35(17):5819-5830.
-
(2007)
Mol Carcinog
, vol.35
, Issue.17
, pp. 5819-5830
-
-
Notenboom, V.1
Hibbert, R.G.2
van Rossum-Fikkert, S.E.3
Olsen, J.V.4
Mann, M.5
Sixma, T.K.6
-
56
-
-
0028314007
-
Specific complex formation between yeast RAD6 and RAD18 proteins: a potential mechanism for targeting RAD6 ubiquitin-conjugating activity to DNA damage sites
-
10.1101/gad.8.7.811, 7926769
-
Bailly V, Lamb J, Sung P, Prakash S, Prakash L. Specific complex formation between yeast RAD6 and RAD18 proteins: a potential mechanism for targeting RAD6 ubiquitin-conjugating activity to DNA damage sites. Genes Dev 1994, 8(7):811-820. 10.1101/gad.8.7.811, 7926769.
-
(1994)
Genes Dev
, vol.8
, Issue.7
, pp. 811-820
-
-
Bailly, V.1
Lamb, J.2
Sung, P.3
Prakash, S.4
Prakash, L.5
-
57
-
-
0023236126
-
The yeast DNA repair gene Rad6 encodes a ubiquitin-conjugating enzime
-
Jentsch S, McGrath J, Varshavsky A. The yeast DNA repair gene Rad6 encodes a ubiquitin-conjugating enzime. Nature 1987, 329(10):131-134.
-
(1987)
Nature
, vol.329
, Issue.10
, pp. 131-134
-
-
Jentsch, S.1
McGrath, J.2
Varshavsky, A.3
-
58
-
-
0034600851
-
Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair
-
10.1093/emboj/19.13.3388, 313941, 10880451
-
Ulrich HD, Jentsch S. Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair. EMBO J 2000, 19(13):3388-3397. 10.1093/emboj/19.13.3388, 313941, 10880451.
-
(2000)
EMBO J
, vol.19
, Issue.13
, pp. 3388-3397
-
-
Ulrich, H.D.1
Jentsch, S.2
-
59
-
-
0030791425
-
Domains required for dimerization of yeast Rad6 ubiquitin-conjugating enzyme and Rad18 DNA binding protein
-
232307, 9234711
-
Bailly V, Prakash S, Prakash L. Domains required for dimerization of yeast Rad6 ubiquitin-conjugating enzyme and Rad18 DNA binding protein. Mol Cell Biol 1997, 17(8):4536-4543. 232307, 9234711.
-
(1997)
Mol Cell Biol
, vol.17
, Issue.8
, pp. 4536-4543
-
-
Bailly, V.1
Prakash, S.2
Prakash, L.3
-
60
-
-
85059598698
-
E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6
-
Hibbert RG, Huang A, Boelens R, Sixma TK. E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6. P Natl Acad Sci USA 2011, 1:1-7.
-
(2011)
P Natl Acad Sci USA
, vol.1
, pp. 1-7
-
-
Hibbert, R.G.1
Huang, A.2
Boelens, R.3
Sixma, T.K.4
-
61
-
-
0032513037
-
Crystal structure of the Saccharomyces cerevisiae ubiquitin-conjugating enzyme Rad6 at 2.6Å resolution
-
10.1074/jbc.273.11.6271, 9497353
-
Worthylake D, Prakash S, Prakash L, Hill C. Crystal structure of the Saccharomyces cerevisiae ubiquitin-conjugating enzyme Rad6 at 2.6Å resolution. J Biol Chem 1998, 273(11):6271-6276. 10.1074/jbc.273.11.6271, 9497353.
-
(1998)
J Biol Chem
, vol.273
, Issue.11
, pp. 6271-6276
-
-
Worthylake, D.1
Prakash, S.2
Prakash, L.3
Hill, C.4
-
62
-
-
0037470244
-
Protein-protein interactions within an E2-RING finger complex
-
10.1074/jbc.M212195200, 12496280
-
Ulrich HD. Protein-protein interactions within an E2-RING finger complex. J Biol Chem 2003, 278(9):7051-7058. 10.1074/jbc.M212195200, 12496280.
-
(2003)
J Biol Chem
, vol.278
, Issue.9
, pp. 7051-7058
-
-
Ulrich, H.D.1
-
63
-
-
0035958926
-
In vitro assembly and recognition of Lys-63 polyubiquitin chains
-
10.1074/jbc.M103378200, 11369780
-
Hofmann R, Pickart C. In vitro assembly and recognition of Lys-63 polyubiquitin chains. J Biol Chem 2001, 276(30):27936-43. 10.1074/jbc.M103378200, 11369780.
-
(2001)
J Biol Chem
, vol.276
, Issue.30
, pp. 27936-27943
-
-
Hofmann, R.1
Pickart, C.2
-
64
-
-
33749506057
-
Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation
-
10.1038/nsmb1148, 16980971
-
Eddins MJ, Carlile CM, Gomez KM, Pickart CM, Wolberger C. Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation. Nat Struct Mol Biol 2006, 13(10):915-920. 10.1038/nsmb1148, 16980971.
-
(2006)
Nat Struct Mol Biol
, vol.13
, Issue.10
, pp. 915-920
-
-
Eddins, M.J.1
Carlile, C.M.2
Gomez, K.M.3
Pickart, C.M.4
Wolberger, C.5
-
65
-
-
0015305799
-
Repair of pyrimidine dimer damage induced in yeast by ultraviolet light
-
247317, 4551759
-
Resnick M, Setlow J. Repair of pyrimidine dimer damage induced in yeast by ultraviolet light. J Bacteriol 1972, 109(3):979-986. 247317, 4551759.
-
(1972)
J Bacteriol
, vol.109
, Issue.3
, pp. 979-986
-
-
Resnick, M.1
Setlow, J.2
-
66
-
-
0016711420
-
UV-induction of thymine-containing dimers in Saccharomyces cerevisiae
-
Fäth W, Brendel M. UV-induction of thymine-containing dimers in Saccharomyces cerevisiae. Z Naturforsch C 1975, 30(6):811-817.
-
(1975)
Z Naturforsch C
, vol.30
, Issue.6
, pp. 811-817
-
-
Fäth, W.1
Brendel, M.2
-
67
-
-
84941736224
-
BioSimWare: a software for the modeling, simulation and analysis of biological systems
-
LNCS 6501. Berlin, Heidelberg: Springer-Verlag, Gheorghe M, Hinze T, Pǎun G, Rozenberg G, Salomaa A
-
Besozzi D, Cazzaniga P, Mauri G, Pescini D. BioSimWare: a software for the modeling, simulation and analysis of biological systems. Membrane Computing, 11th International Conference, CMC 2010, Jena, Germany, August 24-27, Revised selected papers 2010, 119-143. LNCS 6501. Berlin, Heidelberg: Springer-Verlag, Gheorghe M, Hinze T, Pǎun G, Rozenberg G, Salomaa A.
-
(2010)
Membrane Computing, 11th International Conference, CMC 2010, Jena, Germany, August 24-27, Revised selected papers
, pp. 119-143
-
-
Besozzi, D.1
Cazzaniga, P.2
Mauri, G.3
Pescini, D.4
-
68
-
-
31544465969
-
Efficient step size selection for the tau-leaping simulation method
-
10.1063/1.2159468, 16460151
-
Cao Y, Gillespie DT, Petzold L. Efficient step size selection for the tau-leaping simulation method. J Chem Phys 2006, 124(4):044109. 10.1063/1.2159468, 16460151.
-
(2006)
J Chem Phys
, vol.124
, Issue.4
, pp. 044109
-
-
Cao, Y.1
Gillespie, D.T.2
Petzold, L.3
-
69
-
-
84952096573
-
Factorial sampling plans for preliminary computational experiments
-
Morris M. Factorial sampling plans for preliminary computational experiments. Technometrics 1991, 33(2):161-174.
-
(1991)
Technometrics
, vol.33
, Issue.2
, pp. 161-174
-
-
Morris, M.1
-
70
-
-
34147165083
-
An effective screening design for sensitivity analysis of large models
-
Campolongo F, Cariboni J, Saltelli A. An effective screening design for sensitivity analysis of large models. Environ Modell Softw 2007, 22(10):1509-1518.
-
(2007)
Environ Modell Softw
, vol.22
, Issue.10
, pp. 1509-1518
-
-
Campolongo, F.1
Cariboni, J.2
Saltelli, A.3
-
71
-
-
79955484976
-
The spatial and temporal organization of ubiquitin networks
-
3654194, 21448225
-
Grabbe C, Husnjak K, Dikic I. The spatial and temporal organization of ubiquitin networks. Nat Rev Mol Cell Biol 2011, 12(5):295-307. 3654194, 21448225.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, Issue.5
, pp. 295-307
-
-
Grabbe, C.1
Husnjak, K.2
Dikic, I.3
-
72
-
-
0035292759
-
Themes and variations on ubiquitylation
-
10.1038/35056563, 11265246
-
Weissman A. Themes and variations on ubiquitylation. Nat Rev Mol Cell Biol 2001, 2(3):169-178. 10.1038/35056563, 11265246.
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, Issue.3
, pp. 169-178
-
-
Weissman, A.1
-
73
-
-
27144495057
-
E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer
-
10.1038/nsmb984, 16142244
-
Eletr ZM, Huang DT, Duda DM, Schulman BA, Kuhlman B. E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer. Nat Struct Mol Biol 2005, 12(10):933-934. 10.1038/nsmb984, 16142244.
-
(2005)
Nat Struct Mol Biol
, vol.12
, Issue.10
, pp. 933-934
-
-
Eletr, Z.M.1
Huang, D.T.2
Duda, D.M.3
Schulman, B.A.4
Kuhlman, B.5
-
74
-
-
0032741446
-
Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade
-
10.1126/science.286.5443.1321, 10558980
-
Huang L, Kinnucan E, Wang G, Beaudenon S, Howley PM, Huibregtse JM, Pavletich NP. Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade. Science 1999, 286(5443):1321-6. 10.1126/science.286.5443.1321, 10558980.
-
(1999)
Science
, vol.286
, Issue.5443
, pp. 1321-1326
-
-
Huang, L.1
Kinnucan, E.2
Wang, G.3
Beaudenon, S.4
Howley, P.M.5
Huibregtse, J.M.6
Pavletich, N.P.7
-
75
-
-
0034682718
-
Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases
-
10.1016/S0092-8674(00)00057-X, 10966114
-
Zheng N, Wang P, Jeffrey PD, Pavletich NP. Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases. Cell 2000, 102(4):533-539. 10.1016/S0092-8674(00)00057-X, 10966114.
-
(2000)
Cell
, vol.102
, Issue.4
, pp. 533-539
-
-
Zheng, N.1
Wang, P.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
76
-
-
13244249669
-
Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1
-
10.1016/j.molcel.2004.12.020, 15694336
-
Huang DT, Paydar A, Zhuang M, Waddell MB, Holton JM, Schulman BA. Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. Mol Cell 2005, 17(3):341-350. 10.1016/j.molcel.2004.12.020, 15694336.
-
(2005)
Mol Cell
, vol.17
, Issue.3
, pp. 341-350
-
-
Huang, D.T.1
Paydar, A.2
Zhuang, M.3
Waddell, M.B.4
Holton, J.M.5
Schulman, B.A.6
-
77
-
-
20444384040
-
Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex
-
10.1038/nature03588, 1416492, 15931224
-
Reverter D, Lima CD. Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex. Nature 2005, 435(7042):687-692. 10.1038/nature03588, 1416492, 15931224.
-
(2005)
Nature
, vol.435
, Issue.7042
, pp. 687-692
-
-
Reverter, D.1
Lima, C.D.2
-
78
-
-
27944495299
-
Chaperoned ubiquitylation-crystal structures of the CHIP U box E3 ubiquitin ligase and a CHIP-Ubc13-Uev1a complex
-
10.1016/j.molcel.2005.09.023, 16307917
-
Zhang M, Windheim M, Roe SM, Peggie M, Cohen P, Prodromou C, Pearl LH. Chaperoned ubiquitylation-crystal structures of the CHIP U box E3 ubiquitin ligase and a CHIP-Ubc13-Uev1a complex. Mol Cell 2005, 20(4):525-538. 10.1016/j.molcel.2005.09.023, 16307917.
-
(2005)
Mol Cell
, vol.20
, Issue.4
, pp. 525-538
-
-
Zhang, M.1
Windheim, M.2
Roe, S.M.3
Peggie, M.4
Cohen, P.5
Prodromou, C.6
Pearl, L.H.7
-
79
-
-
63649144413
-
Principles of ubiquitin and SUMO modifications in DNA repair
-
10.1038/nature07963, 19325626
-
Bergink S, Jentsch S. Principles of ubiquitin and SUMO modifications in DNA repair. Nature 2009, 458:461-467. 10.1038/nature07963, 19325626.
-
(2009)
Nature
, vol.458
, pp. 461-467
-
-
Bergink, S.1
Jentsch, S.2
-
80
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
-
10.1002/elps.1150181505, 9504803
-
Guex N, Peitsch M. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18(15):2714-2723. 10.1002/elps.1150181505, 9504803.
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.2
-
81
-
-
47549111312
-
Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes
-
10.1016/j.cell.2008.05.046, 18662542
-
Lee I, Schindelin H. Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell 2008, 134(2):268-278. 10.1016/j.cell.2008.05.046, 18662542.
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 268-278
-
-
Lee, I.1
Schindelin, H.2
-
82
-
-
77953934646
-
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
-
10.1186/1752-0509-4-92, 2909940, 20587024
-
Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C. BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol 2010, 4:92. 10.1186/1752-0509-4-92, 2909940, 20587024.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 92
-
-
Li, C.1
Donizelli, M.2
Rodriguez, N.3
Dharuri, H.4
Endler, L.5
Chelliah, V.6
Li, L.7
He, E.8
Henry, A.9
Stefan, M.I.10
Snoep, J.L.11
Hucka, M.12
Le Novère, N.13
Laibe, C.14
-
83
-
-
84878433641
-
BioModels Database
-
BioModels Database. 2012, [http://www.ebi.ac.uk/biomodels-main].
-
(2012)
-
-
-
84
-
-
59049087433
-
RAD6-RAD18-RAD5-pathway-dependent tolerance to chronic low-dose ultraviolet light
-
10.1038/nature07580, 19079240, AMCarr
-
Hishida T, Kubota Y, Iwasaki H, AMCarr RAD6-RAD18-RAD5-pathway-dependent tolerance to chronic low-dose ultraviolet light. Nature 2009, 457(7229):612-615. 10.1038/nature07580, 19079240, AMCarr.
-
(2009)
Nature
, vol.457
, Issue.7229
, pp. 612-615
-
-
Hishida, T.1
Kubota, Y.2
Iwasaki, H.3
-
85
-
-
33645244521
-
The in vivo characterization of translesion synthesis across UV-induced lesions in Saccharomyces cerevisiae: insights into Pol zeta- and Pol eta-dependent frameshift mutagenesis
-
Abdulovic A, Jinks-Robertson S. The in vivo characterization of translesion synthesis across UV-induced lesions in Saccharomyces cerevisiae: insights into Pol zeta- and Pol eta-dependent frameshift mutagenesis. Genetics 2006, 172(3):1489-1498.
-
(2006)
Genetics
, vol.172
, Issue.3
, pp. 1489-1498
-
-
Abdulovic, A.1
Jinks-Robertson, S.2
-
86
-
-
0018606788
-
Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19
-
10.1007/BF00333097, 392238
-
Prakash L, Prakash S. Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19. Mol Gen Genet 1979, 176(3):351-359. 10.1007/BF00333097, 392238.
-
(1979)
Mol Gen Genet
, vol.176
, Issue.3
, pp. 351-359
-
-
Prakash, L.1
Prakash, S.2
-
87
-
-
79551497695
-
A novel method for the genome-wide high resolution analysis of DNA damage
-
10.1093/nar/gkq1036, 3025580, 21062813
-
Teng Y, Bennett M, Evans KE, Zhuang-Jackson H, Higgs A, Reed SH, Waters R. A novel method for the genome-wide high resolution analysis of DNA damage. Nucleic Acids Res 2011, 39(2):e10. 10.1093/nar/gkq1036, 3025580, 21062813.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.2
-
-
Teng, Y.1
Bennett, M.2
Evans, K.E.3
Zhuang-Jackson, H.4
Higgs, A.5
Reed, S.H.6
Waters, R.7
-
88
-
-
33646873985
-
Role of Doa1 in the Saccharomyces cerevisiae DNA Damage Response
-
10.1128/MCB.01640-05, 1489103, 16705165
-
Lis E, Romesberg F. Role of Doa1 in the Saccharomyces cerevisiae DNA Damage Response. Mol Cell Biol 2006, 26(11):4122-4133. 10.1128/MCB.01640-05, 1489103, 16705165.
-
(2006)
Mol Cell Biol
, vol.26
, Issue.11
, pp. 4122-4133
-
-
Lis, E.1
Romesberg, F.2
-
89
-
-
0032794445
-
The Doa4 deubiquitinating enzyme is required for ubiquitin homeostasis in yeast
-
Swaminathan S, Amerik A, Hochstrasser M. The Doa4 deubiquitinating enzyme is required for ubiquitin homeostasis in yeast. Mol Cell Biol 1999, 10(8):2583-2594.
-
(1999)
Mol Cell Biol
, vol.10
, Issue.8
, pp. 2583-2594
-
-
Swaminathan, S.1
Amerik, A.2
Hochstrasser, M.3
-
90
-
-
0033783007
-
Analysis of the deubiquitinating enzymes of the yeast Saccharomyces cerevisiae
-
Amerik A, Hochstrasser M. Analysis of the deubiquitinating enzymes of the yeast Saccharomyces cerevisiae. Biol Chem 2000, 381(9-10):981-992.
-
(2000)
Biol Chem
, vol.381
, Issue.9-10
, pp. 981-992
-
-
Amerik, A.1
Hochstrasser, M.2
-
91
-
-
77957375149
-
Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation
-
10.1016/j.molcel.2010.09.004, 20932474
-
Giannattasio M, Follonier C, Tourrière H, Puddu F, Lazzaro F, Pasero P, Lopes M, Plevani P, Muzi-Falconi M. Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation. Mol Cell 2010, 40:50-62. 10.1016/j.molcel.2010.09.004, 20932474.
-
(2010)
Mol Cell
, vol.40
, pp. 50-62
-
-
Giannattasio, M.1
Follonier, C.2
Tourrière, H.3
Puddu, F.4
Lazzaro, F.5
Pasero, P.6
Lopes, M.7
Plevani, P.8
Muzi-Falconi, M.9
-
92
-
-
21244483140
-
Homologous recombination is involved in transcription-coupled repair of UV damage in Saccharomyces cerevisiae
-
10.1038/sj.emboj.7600665, 1142603, 15902273
-
Aboussekhra A, Al-Sharif I. Homologous recombination is involved in transcription-coupled repair of UV damage in Saccharomyces cerevisiae. EMBO J 2005, 24(11):1999-2010. 10.1038/sj.emboj.7600665, 1142603, 15902273.
-
(2005)
EMBO J
, vol.24
, Issue.11
, pp. 1999-2010
-
-
Aboussekhra, A.1
Al-Sharif, I.2
-
93
-
-
36849070287
-
Requirement of Nse1, a subunit of the Smc5-Smc6 complex, for Rad52-dependent postreplication repair of UV-damaged DNA in Saccharomyces cerevisiae
-
10.1128/MCB.01543-07, 2169175, 17923688
-
Santa Maria S, Gangavarapu V, Johnson R, Prakash L, Prakash S. Requirement of Nse1, a subunit of the Smc5-Smc6 complex, for Rad52-dependent postreplication repair of UV-damaged DNA in Saccharomyces cerevisiae. Mol Cell Biol 2007, 27(23):8409-8418. 10.1128/MCB.01543-07, 2169175, 17923688.
-
(2007)
Mol Cell Biol
, vol.27
, Issue.23
, pp. 8409-8418
-
-
Santa Maria, S.1
Gangavarapu, V.2
Johnson, R.3
Prakash, L.4
Prakash, S.5
-
94
-
-
84855198651
-
Requirement of replication checkpoint protein kinases Mec1/Rad53 for postreplication repair in yeast
-
3101783, 21586645
-
Gangavarapu V, Santa Maria S, Prakash S, Prakash L. Requirement of replication checkpoint protein kinases Mec1/Rad53 for postreplication repair in yeast. mBio 2011, 2(3):e00079-11. 3101783, 21586645.
-
(2011)
mBio
, vol.2
, Issue.3
-
-
Gangavarapu, V.1
Santa Maria, S.2
Prakash, S.3
Prakash, L.4
-
95
-
-
79955934251
-
Defects in DNA ligase I trigger PCNA ubiquitylation at Lys 107
-
10.1038/ncb2007, 2799194, 20010813
-
Das-Bradoo S, Nguyen H, Wood J, Ricke R, Haworth J, Bielinsky A. Defects in DNA ligase I trigger PCNA ubiquitylation at Lys 107. Nat Cell Biol 2010, 12:74-79. 10.1038/ncb2007, 2799194, 20010813.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 74-79
-
-
Das-Bradoo, S.1
Nguyen, H.2
Wood, J.3
Ricke, R.4
Haworth, J.5
Bielinsky, A.6
-
96
-
-
84878466379
-
Deubiquitinating enzymes and post-replication repair in Schizosaccharomyces pombe
-
PhD thesis, University of Sussex 2010
-
Holmes RM. Deubiquitinating enzymes and post-replication repair in Schizosaccharomyces pombe. PhD thesis, University of Sussex 2010.
-
-
-
Holmes, R.M.1
-
97
-
-
84864588410
-
Reversal of PCNA ubiquitylation by Ubp10 in Saccharomyces cerevisiae
-
10.1371/journal.pgen.1002826, 3400564, 22829782
-
Gallego-Sánchez A, Andrés S, Conde F, San-Segundo P, Bueno A. Reversal of PCNA ubiquitylation by Ubp10 in Saccharomyces cerevisiae. PLoS Genet 2012, 8(7):e1002826. 10.1371/journal.pgen.1002826, 3400564, 22829782.
-
(2012)
PLoS Genet
, vol.8
, Issue.7
-
-
Gallego-Sánchez, A.1
Andrés, S.2
Conde, F.3
San-Segundo, P.4
Bueno, A.5
-
98
-
-
51949083815
-
SUMO modification of PCNA is controlled by DNA
-
10.1038/emboj.2008.162, 2518684, 18701921
-
Parker J, Bucceri A, Davies A, Heidrich K, Windecker H, Ulrich HD. SUMO modification of PCNA is controlled by DNA. EMBO J 2008, 27:2422-2431. 10.1038/emboj.2008.162, 2518684, 18701921.
-
(2008)
EMBO J
, vol.27
, pp. 2422-2431
-
-
Parker, J.1
Bucceri, A.2
Davies, A.3
Heidrich, K.4
Windecker, H.5
Ulrich, H.D.6
|